Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15090

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15085 and CA264_15090 are separated by 52 nucleotidesCA264_15090 and CA264_15095 are separated by 77 nucleotidesCA264_15095 and CA264_15100 are separated by 16 nucleotides CA264_15085: CA264_15085 - hypothetical protein, at 3,541,504 to 3,542,562 _15085 CA264_15090: CA264_15090 - STAS/SEC14 domain-containing protein, at 3,542,615 to 3,543,352 _15090 CA264_15095: CA264_15095 - hypothetical protein, at 3,543,430 to 3,543,627 _15095 CA264_15100: CA264_15100 - hypothetical protein, at 3,543,644 to 3,544,213 _15100 Position (kb) 3542 3543 3544Strain fitness (log2 ratio) -3 -2 -1 0 1at 3541.637 kb on + strand, within CA264_15085at 3541.638 kb on - strand, within CA264_15085at 3541.638 kb on - strand, within CA264_15085at 3541.782 kb on - strand, within CA264_15085at 3541.896 kb on - strand, within CA264_15085at 3542.042 kb on - strand, within CA264_15085at 3542.092 kb on - strand, within CA264_15085at 3542.096 kb on + strand, within CA264_15085at 3542.329 kb on - strand, within CA264_15085at 3542.342 kb on + strand, within CA264_15085at 3542.343 kb on - strand, within CA264_15085at 3542.391 kb on - strand, within CA264_15085at 3542.412 kb on - strand, within CA264_15085at 3542.423 kb on - strand, within CA264_15085at 3542.460 kb on - strandat 3542.546 kb on - strandat 3542.562 kb on + strandat 3542.562 kb on + strandat 3542.563 kb on - strandat 3542.565 kb on + strandat 3542.656 kb on + strandat 3542.660 kb on + strandat 3542.660 kb on + strandat 3542.882 kb on + strand, within CA264_15090at 3543.045 kb on - strand, within CA264_15090at 3543.110 kb on + strand, within CA264_15090at 3543.153 kb on - strand, within CA264_15090at 3543.153 kb on - strand, within CA264_15090at 3543.179 kb on + strand, within CA264_15090at 3543.179 kb on + strand, within CA264_15090at 3543.179 kb on + strand, within CA264_15090at 3543.180 kb on - strand, within CA264_15090at 3543.217 kb on - strand, within CA264_15090at 3543.295 kb on - strandat 3543.353 kb on - strandat 3543.368 kb on + strandat 3543.419 kb on + strandat 3543.447 kb on - strandat 3543.486 kb on - strand, within CA264_15095at 3543.519 kb on - strand, within CA264_15095at 3543.603 kb on - strand, within CA264_15095at 3543.603 kb on - strand, within CA264_15095at 3543.638 kb on - strandat 3543.638 kb on - strandat 3543.644 kb on - strandat 3543.644 kb on - strandat 3543.644 kb on - strandat 3543.644 kb on - strandat 3543.662 kb on + strandat 3543.663 kb on - strandat 3543.663 kb on - strandat 3543.665 kb on + strandat 3543.665 kb on + strandat 3543.665 kb on + strandat 3543.666 kb on - strandat 3543.666 kb on - strandat 3543.666 kb on - strandat 3543.684 kb on - strandat 3543.684 kb on - strandat 3543.717 kb on - strand, within CA264_15100at 3543.743 kb on + strand, within CA264_15100at 3543.744 kb on - strand, within CA264_15100at 3543.758 kb on + strand, within CA264_15100at 3543.758 kb on + strand, within CA264_15100at 3543.759 kb on - strand, within CA264_15100at 3543.768 kb on - strand, within CA264_15100at 3543.792 kb on + strand, within CA264_15100at 3543.793 kb on - strand, within CA264_15100at 3543.824 kb on + strand, within CA264_15100at 3543.834 kb on - strand, within CA264_15100at 3543.895 kb on + strand, within CA264_15100at 3543.896 kb on - strand, within CA264_15100at 3544.005 kb on - strand, within CA264_15100at 3544.007 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.030 kb on - strand, within CA264_15100at 3544.091 kb on + strand, within CA264_15100at 3544.091 kb on + strand, within CA264_15100at 3544.104 kb on - strand, within CA264_15100at 3544.106 kb on + strand, within CA264_15100at 3544.107 kb on - strand, within CA264_15100at 3544.107 kb on - strand, within CA264_15100at 3544.179 kb on + strandat 3544.233 kb on - strandat 3544.273 kb on + strandat 3544.279 kb on + strandat 3544.279 kb on + strandat 3544.286 kb on + strandat 3544.287 kb on - strandat 3544.289 kb on + strandat 3544.292 kb on + strandat 3544.292 kb on + strandat 3544.292 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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3,541,637 + CA264_15085 0.13 -1.7
3,541,638 - CA264_15085 0.13 +1.1
3,541,638 - CA264_15085 0.13 -2.9
3,541,782 - CA264_15085 0.26 -1.4
3,541,896 - CA264_15085 0.37 -1.5
3,542,042 - CA264_15085 0.51 +0.5
3,542,092 - CA264_15085 0.56 -0.7
3,542,096 + CA264_15085 0.56 -0.6
3,542,329 - CA264_15085 0.78 -0.2
3,542,342 + CA264_15085 0.79 +0.5
3,542,343 - CA264_15085 0.79 -0.4
3,542,391 - CA264_15085 0.84 -1.0
3,542,412 - CA264_15085 0.86 -0.5
3,542,423 - CA264_15085 0.87 +1.3
3,542,460 - -1.1
3,542,546 - +1.3
3,542,562 + +1.3
3,542,562 + +0.0
3,542,563 - +0.3
3,542,565 + -2.8
3,542,656 + +0.9
3,542,660 + -0.3
3,542,660 + -0.5
3,542,882 + CA264_15090 0.36 -0.5
3,543,045 - CA264_15090 0.58 +0.3
3,543,110 + CA264_15090 0.67 +0.0
3,543,153 - CA264_15090 0.73 -1.5
3,543,153 - CA264_15090 0.73 -2.4
3,543,179 + CA264_15090 0.76 -0.4
3,543,179 + CA264_15090 0.76 -0.1
3,543,179 + CA264_15090 0.76 +1.6
3,543,180 - CA264_15090 0.77 -0.5
3,543,217 - CA264_15090 0.82 -1.6
3,543,295 - +0.5
3,543,353 - -2.3
3,543,368 + -0.7
3,543,419 + -2.4
3,543,447 - +0.3
3,543,486 - CA264_15095 0.28 -1.3
3,543,519 - CA264_15095 0.45 -1.7
3,543,603 - CA264_15095 0.87 -1.0
3,543,603 - CA264_15095 0.87 -1.2
3,543,638 - -1.1
3,543,638 - +0.3
3,543,644 - -0.6
3,543,644 - -0.6
3,543,644 - -0.7
3,543,644 - -1.1
3,543,662 + -2.1
3,543,663 - +1.3
3,543,663 - -1.3
3,543,665 + -1.2
3,543,665 + -0.4
3,543,665 + -0.7
3,543,666 - -1.7
3,543,666 - -0.7
3,543,666 - -1.6
3,543,684 - -0.4
3,543,684 - -1.0
3,543,717 - CA264_15100 0.13 +1.3
3,543,743 + CA264_15100 0.17 -2.2
3,543,744 - CA264_15100 0.18 -1.5
3,543,758 + CA264_15100 0.20 -0.5
3,543,758 + CA264_15100 0.20 +0.8
3,543,759 - CA264_15100 0.20 -1.3
3,543,768 - CA264_15100 0.22 +0.6
3,543,792 + CA264_15100 0.26 -1.1
3,543,793 - CA264_15100 0.26 -3.3
3,543,824 + CA264_15100 0.32 -1.4
3,543,834 - CA264_15100 0.33 -0.7
3,543,895 + CA264_15100 0.44 -1.9
3,543,896 - CA264_15100 0.44 -1.3
3,544,005 - CA264_15100 0.63 +0.5
3,544,007 + CA264_15100 0.64 -0.2
3,544,029 + CA264_15100 0.68 -0.5
3,544,029 + CA264_15100 0.68 +1.3
3,544,029 + CA264_15100 0.68 -1.2
3,544,029 + CA264_15100 0.68 -2.3
3,544,029 + CA264_15100 0.68 -0.6
3,544,029 + CA264_15100 0.68 +1.3
3,544,030 - CA264_15100 0.68 -1.5
3,544,091 + CA264_15100 0.78 -1.5
3,544,091 + CA264_15100 0.78 -0.6
3,544,104 - CA264_15100 0.81 +0.7
3,544,106 + CA264_15100 0.81 -0.8
3,544,107 - CA264_15100 0.81 -0.7
3,544,107 - CA264_15100 0.81 -0.9
3,544,179 + -0.4
3,544,233 - -0.6
3,544,273 + -1.1
3,544,279 + -0.7
3,544,279 + -0.2
3,544,286 + -2.2
3,544,287 - +0.1
3,544,289 + -0.6
3,544,292 + -0.4
3,544,292 + -1.3
3,544,292 + -0.3

Or see this region's nucleotide sequence