Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15070

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15065 and CA264_15070 are separated by 107 nucleotidesCA264_15070 and CA264_15075 are separated by 72 nucleotides CA264_15065: CA264_15065 - formiminoglutamase, at 3,538,033 to 3,539,199 _15065 CA264_15070: CA264_15070 - cytochrome b5, at 3,539,307 to 3,539,567 _15070 CA264_15075: CA264_15075 - hypothetical protein, at 3,539,640 to 3,540,506 _15075 Position (kb) 3539 3540Strain fitness (log2 ratio) -2 -1 0 1 2at 3538.342 kb on + strand, within CA264_15065at 3538.427 kb on - strand, within CA264_15065at 3538.724 kb on + strand, within CA264_15065at 3538.865 kb on - strand, within CA264_15065at 3538.871 kb on - strand, within CA264_15065at 3539.284 kb on + strandat 3539.285 kb on - strandat 3539.302 kb on - strandat 3539.302 kb on - strandat 3539.382 kb on + strand, within CA264_15070at 3539.397 kb on + strand, within CA264_15070at 3539.398 kb on - strand, within CA264_15070at 3539.398 kb on - strand, within CA264_15070at 3539.404 kb on + strand, within CA264_15070at 3539.404 kb on + strand, within CA264_15070at 3539.404 kb on + strand, within CA264_15070at 3539.404 kb on + strand, within CA264_15070at 3539.405 kb on - strand, within CA264_15070at 3539.405 kb on - strand, within CA264_15070at 3539.405 kb on - strand, within CA264_15070at 3539.477 kb on - strand, within CA264_15070at 3539.565 kb on + strandat 3539.566 kb on - strandat 3539.589 kb on + strandat 3539.590 kb on - strandat 3539.590 kb on - strandat 3539.601 kb on - strandat 3539.618 kb on + strandat 3539.628 kb on + strandat 3539.628 kb on + strandat 3539.632 kb on + strandat 3539.632 kb on + strandat 3539.632 kb on + strandat 3539.633 kb on - strandat 3539.634 kb on + strandat 3539.634 kb on + strandat 3539.635 kb on - strandat 3539.635 kb on - strandat 3539.648 kb on - strandat 3540.481 kb on + strandat 3540.500 kb on + strandat 3540.500 kb on + strandat 3540.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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3,538,342 + CA264_15065 0.26 -0.3
3,538,427 - CA264_15065 0.34 +0.5
3,538,724 + CA264_15065 0.59 +0.3
3,538,865 - CA264_15065 0.71 -1.0
3,538,871 - CA264_15065 0.72 -2.5
3,539,284 + +1.3
3,539,285 - -1.8
3,539,302 - -0.9
3,539,302 - -1.2
3,539,382 + CA264_15070 0.29 +2.3
3,539,397 + CA264_15070 0.34 -0.0
3,539,398 - CA264_15070 0.35 +0.2
3,539,398 - CA264_15070 0.35 -1.3
3,539,404 + CA264_15070 0.37 +0.7
3,539,404 + CA264_15070 0.37 -0.7
3,539,404 + CA264_15070 0.37 -0.2
3,539,404 + CA264_15070 0.37 -0.3
3,539,405 - CA264_15070 0.38 +0.7
3,539,405 - CA264_15070 0.38 -0.2
3,539,405 - CA264_15070 0.38 -2.3
3,539,477 - CA264_15070 0.65 -0.2
3,539,565 + +1.3
3,539,566 - +0.1
3,539,589 + -0.6
3,539,590 - -0.4
3,539,590 - -1.0
3,539,601 - -1.0
3,539,618 + +0.7
3,539,628 + -0.6
3,539,628 + -0.1
3,539,632 + +0.5
3,539,632 + -0.7
3,539,632 + -0.3
3,539,633 - +0.5
3,539,634 + -0.7
3,539,634 + -0.5
3,539,635 - -2.4
3,539,635 - +0.3
3,539,648 - -1.0
3,540,481 + -0.6
3,540,500 + -1.3
3,540,500 + -1.4
3,540,501 - -0.2

Or see this region's nucleotide sequence