Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14110

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14105 and CA264_14110 are separated by 1 nucleotidesCA264_14110 and CA264_14115 are separated by 161 nucleotidesCA264_14115 and CA264_14120 are separated by 132 nucleotides CA264_14105: CA264_14105 - T9SS C-terminal target domain-containing protein, at 3,313,128 to 3,314,486 _14105 CA264_14110: CA264_14110 - phosphoribosyltransferase, at 3,314,488 to 3,315,114 _14110 CA264_14115: CA264_14115 - hydrolase, at 3,315,276 to 3,315,962 _14115 CA264_14120: CA264_14120 - hypothetical protein, at 3,316,095 to 3,316,766 _14120 Position (kb) 3314 3315 3316Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3313.538 kb on + strand, within CA264_14105at 3313.545 kb on - strand, within CA264_14105at 3313.553 kb on + strand, within CA264_14105at 3313.554 kb on - strand, within CA264_14105at 3313.585 kb on - strand, within CA264_14105at 3313.597 kb on + strand, within CA264_14105at 3313.598 kb on - strand, within CA264_14105at 3313.618 kb on + strand, within CA264_14105at 3313.618 kb on + strand, within CA264_14105at 3313.628 kb on - strand, within CA264_14105at 3313.670 kb on - strand, within CA264_14105at 3313.680 kb on + strand, within CA264_14105at 3313.693 kb on + strand, within CA264_14105at 3313.694 kb on - strand, within CA264_14105at 3313.759 kb on + strand, within CA264_14105at 3313.759 kb on + strand, within CA264_14105at 3313.759 kb on + strand, within CA264_14105at 3313.759 kb on + strand, within CA264_14105at 3313.759 kb on + strand, within CA264_14105at 3313.759 kb on + strand, within CA264_14105at 3313.760 kb on - strand, within CA264_14105at 3313.783 kb on + strand, within CA264_14105at 3313.784 kb on - strand, within CA264_14105at 3313.789 kb on + strand, within CA264_14105at 3313.851 kb on - strand, within CA264_14105at 3313.898 kb on - strand, within CA264_14105at 3313.898 kb on - strand, within CA264_14105at 3313.910 kb on + strand, within CA264_14105at 3313.910 kb on + strand, within CA264_14105at 3313.910 kb on + strand, within CA264_14105at 3314.010 kb on + strand, within CA264_14105at 3314.065 kb on + strand, within CA264_14105at 3314.101 kb on - strand, within CA264_14105at 3314.142 kb on + strand, within CA264_14105at 3314.143 kb on - strand, within CA264_14105at 3314.149 kb on + strand, within CA264_14105at 3314.201 kb on - strand, within CA264_14105at 3314.201 kb on - strand, within CA264_14105at 3314.471 kb on + strandat 3314.512 kb on + strandat 3314.529 kb on - strandat 3314.701 kb on + strand, within CA264_14110at 3314.829 kb on + strand, within CA264_14110at 3314.853 kb on - strand, within CA264_14110at 3314.958 kb on + strand, within CA264_14110at 3314.959 kb on - strand, within CA264_14110at 3315.133 kb on + strandat 3315.202 kb on - strandat 3315.419 kb on + strand, within CA264_14115at 3315.420 kb on - strand, within CA264_14115at 3315.520 kb on - strand, within CA264_14115at 3315.520 kb on - strand, within CA264_14115at 3315.601 kb on - strand, within CA264_14115at 3315.601 kb on - strand, within CA264_14115at 3315.679 kb on + strand, within CA264_14115at 3315.679 kb on + strand, within CA264_14115at 3315.680 kb on - strand, within CA264_14115at 3315.683 kb on + strand, within CA264_14115at 3315.684 kb on - strand, within CA264_14115at 3315.715 kb on - strand, within CA264_14115at 3315.828 kb on - strand, within CA264_14115at 3315.950 kb on + strandat 3315.952 kb on + strandat 3315.953 kb on - strandat 3315.953 kb on - strandat 3315.953 kb on - strandat 3315.962 kb on + strandat 3315.963 kb on - strandat 3316.005 kb on + strandat 3316.006 kb on - strandat 3316.013 kb on - strandat 3316.024 kb on + strandat 3316.043 kb on - strandat 3316.069 kb on - strandat 3316.090 kb on + strandat 3316.090 kb on + strandat 3316.090 kb on + strandat 3316.091 kb on - strandat 3316.091 kb on - strandat 3316.094 kb on + strandat 3316.094 kb on + strandat 3316.095 kb on - strandat 3316.095 kb on - strandat 3316.095 kb on - strandat 3316.105 kb on + strandat 3316.105 kb on + strandat 3316.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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3,313,538 + CA264_14105 0.30 +1.6
3,313,545 - CA264_14105 0.31 -2.0
3,313,553 + CA264_14105 0.31 +0.9
3,313,554 - CA264_14105 0.31 -1.2
3,313,585 - CA264_14105 0.34 -0.9
3,313,597 + CA264_14105 0.35 +0.8
3,313,598 - CA264_14105 0.35 -0.6
3,313,618 + CA264_14105 0.36 -0.5
3,313,618 + CA264_14105 0.36 -0.3
3,313,628 - CA264_14105 0.37 -1.2
3,313,670 - CA264_14105 0.40 -1.4
3,313,680 + CA264_14105 0.41 -1.4
3,313,693 + CA264_14105 0.42 +0.2
3,313,694 - CA264_14105 0.42 +0.7
3,313,759 + CA264_14105 0.46 -1.7
3,313,759 + CA264_14105 0.46 -0.2
3,313,759 + CA264_14105 0.46 -1.5
3,313,759 + CA264_14105 0.46 +0.8
3,313,759 + CA264_14105 0.46 -0.2
3,313,759 + CA264_14105 0.46 -0.6
3,313,760 - CA264_14105 0.47 -0.8
3,313,783 + CA264_14105 0.48 -1.9
3,313,784 - CA264_14105 0.48 -1.0
3,313,789 + CA264_14105 0.49 +0.4
3,313,851 - CA264_14105 0.53 +0.1
3,313,898 - CA264_14105 0.57 -1.0
3,313,898 - CA264_14105 0.57 -1.8
3,313,910 + CA264_14105 0.58 +0.6
3,313,910 + CA264_14105 0.58 -0.9
3,313,910 + CA264_14105 0.58 -1.6
3,314,010 + CA264_14105 0.65 -0.9
3,314,065 + CA264_14105 0.69 -1.4
3,314,101 - CA264_14105 0.72 -0.6
3,314,142 + CA264_14105 0.75 +0.8
3,314,143 - CA264_14105 0.75 +0.5
3,314,149 + CA264_14105 0.75 -1.4
3,314,201 - CA264_14105 0.79 -0.2
3,314,201 - CA264_14105 0.79 -0.1
3,314,471 + +0.5
3,314,512 + +2.0
3,314,529 - -0.2
3,314,701 + CA264_14110 0.34 -0.4
3,314,829 + CA264_14110 0.54 -1.3
3,314,853 - CA264_14110 0.58 -0.2
3,314,958 + CA264_14110 0.75 -0.2
3,314,959 - CA264_14110 0.75 -0.6
3,315,133 + +0.5
3,315,202 - -0.6
3,315,419 + CA264_14115 0.21 -0.8
3,315,420 - CA264_14115 0.21 +1.5
3,315,520 - CA264_14115 0.36 -0.6
3,315,520 - CA264_14115 0.36 +0.2
3,315,601 - CA264_14115 0.47 +0.2
3,315,601 - CA264_14115 0.47 +3.3
3,315,679 + CA264_14115 0.59 -0.6
3,315,679 + CA264_14115 0.59 +2.9
3,315,680 - CA264_14115 0.59 -2.1
3,315,683 + CA264_14115 0.59 +0.2
3,315,684 - CA264_14115 0.59 +0.8
3,315,715 - CA264_14115 0.64 +2.2
3,315,828 - CA264_14115 0.80 +0.2
3,315,950 + -0.4
3,315,952 + -1.3
3,315,953 - +0.1
3,315,953 - +0.4
3,315,953 - -0.6
3,315,962 + +1.0
3,315,963 - -0.4
3,316,005 + -2.5
3,316,006 - -0.1
3,316,013 - +0.2
3,316,024 + -1.1
3,316,043 - -0.3
3,316,069 - -1.5
3,316,090 + -0.3
3,316,090 + -0.9
3,316,090 + -1.3
3,316,091 - -0.3
3,316,091 - +0.1
3,316,094 + +1.7
3,316,094 + -0.6
3,316,095 - -0.4
3,316,095 - +0.3
3,316,095 - +1.8
3,316,105 + -1.4
3,316,105 + +0.5
3,316,106 - +0.7

Or see this region's nucleotide sequence