Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13395

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13390 and CA264_13395 are separated by 275 nucleotidesCA264_13395 and CA264_13400 are separated by 111 nucleotides CA264_13390: CA264_13390 - sodium-translocating pyrophosphatase, at 3,121,509 to 3,123,773 _13390 CA264_13395: CA264_13395 - aminopeptidase, at 3,124,049 to 3,124,963 _13395 CA264_13400: CA264_13400 - tol-pal system protein YbgF, at 3,125,075 to 3,126,322 _13400 Position (kb) 3124 3125Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3123.129 kb on - strand, within CA264_13390at 3123.138 kb on + strand, within CA264_13390at 3123.139 kb on - strand, within CA264_13390at 3123.213 kb on + strand, within CA264_13390at 3123.213 kb on + strand, within CA264_13390at 3123.216 kb on - strand, within CA264_13390at 3123.324 kb on - strand, within CA264_13390at 3123.376 kb on - strand, within CA264_13390at 3123.401 kb on + strand, within CA264_13390at 3123.477 kb on - strand, within CA264_13390at 3123.527 kb on + strand, within CA264_13390at 3123.553 kb on + strandat 3123.554 kb on - strandat 3123.722 kb on - strandat 3123.800 kb on - strandat 3123.800 kb on - strandat 3123.806 kb on - strandat 3123.806 kb on - strandat 3123.808 kb on - strandat 3123.814 kb on - strandat 3123.947 kb on + strandat 3123.999 kb on + strandat 3124.000 kb on - strandat 3124.075 kb on - strandat 3124.088 kb on - strandat 3124.088 kb on - strandat 3124.152 kb on - strand, within CA264_13395at 3124.234 kb on - strand, within CA264_13395at 3124.274 kb on + strand, within CA264_13395at 3124.274 kb on + strand, within CA264_13395at 3124.278 kb on + strand, within CA264_13395at 3124.278 kb on + strand, within CA264_13395at 3124.358 kb on - strand, within CA264_13395at 3124.358 kb on - strand, within CA264_13395at 3124.404 kb on + strand, within CA264_13395at 3124.404 kb on + strand, within CA264_13395at 3124.405 kb on - strand, within CA264_13395at 3124.463 kb on - strand, within CA264_13395at 3124.614 kb on + strand, within CA264_13395at 3124.614 kb on + strand, within CA264_13395at 3124.614 kb on + strand, within CA264_13395at 3124.614 kb on + strand, within CA264_13395at 3124.614 kb on + strand, within CA264_13395at 3124.615 kb on - strand, within CA264_13395at 3124.615 kb on - strand, within CA264_13395at 3124.651 kb on + strand, within CA264_13395at 3124.651 kb on + strand, within CA264_13395at 3124.693 kb on - strand, within CA264_13395at 3124.884 kb on + strandat 3124.889 kb on + strandat 3125.018 kb on + strandat 3125.028 kb on - strandat 3125.030 kb on + strandat 3125.049 kb on + strandat 3125.056 kb on + strandat 3125.056 kb on + strandat 3125.056 kb on + strandat 3125.057 kb on - strandat 3125.057 kb on - strandat 3125.072 kb on + strandat 3125.072 kb on + strandat 3125.127 kb on + strandat 3125.127 kb on + strandat 3125.128 kb on - strandat 3125.175 kb on + strandat 3125.176 kb on - strandat 3125.196 kb on + strandat 3125.217 kb on + strand, within CA264_13400at 3125.217 kb on + strand, within CA264_13400at 3125.283 kb on - strand, within CA264_13400at 3125.283 kb on - strand, within CA264_13400at 3125.283 kb on - strand, within CA264_13400at 3125.283 kb on - strand, within CA264_13400at 3125.295 kb on - strand, within CA264_13400at 3125.392 kb on - strand, within CA264_13400at 3125.442 kb on - strand, within CA264_13400at 3125.456 kb on - strand, within CA264_13400at 3125.477 kb on + strand, within CA264_13400at 3125.478 kb on - strand, within CA264_13400at 3125.529 kb on - strand, within CA264_13400at 3125.679 kb on - strand, within CA264_13400at 3125.708 kb on - strand, within CA264_13400at 3125.708 kb on - strand, within CA264_13400at 3125.812 kb on + strand, within CA264_13400at 3125.893 kb on + strand, within CA264_13400at 3125.893 kb on + strand, within CA264_13400at 3125.897 kb on + strand, within CA264_13400at 3125.897 kb on + strand, within CA264_13400at 3125.912 kb on + strand, within CA264_13400at 3125.927 kb on + strand, within CA264_13400at 3125.928 kb on - strand, within CA264_13400at 3125.946 kb on + strand, within CA264_13400

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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3,123,129 - CA264_13390 0.72 -1.3
3,123,138 + CA264_13390 0.72 -1.2
3,123,139 - CA264_13390 0.72 -1.8
3,123,213 + CA264_13390 0.75 +3.0
3,123,213 + CA264_13390 0.75 -0.7
3,123,216 - CA264_13390 0.75 -1.0
3,123,324 - CA264_13390 0.80 +0.8
3,123,376 - CA264_13390 0.82 -1.2
3,123,401 + CA264_13390 0.84 -2.0
3,123,477 - CA264_13390 0.87 -1.5
3,123,527 + CA264_13390 0.89 -1.0
3,123,553 + -0.5
3,123,554 - +0.0
3,123,722 - +0.2
3,123,800 - -0.8
3,123,800 - -0.5
3,123,806 - -1.7
3,123,806 - -1.8
3,123,808 - -1.2
3,123,814 - -1.1
3,123,947 + +0.6
3,123,999 + +0.7
3,124,000 - -2.0
3,124,075 - -1.4
3,124,088 - +0.2
3,124,088 - +1.4
3,124,152 - CA264_13395 0.11 -1.2
3,124,234 - CA264_13395 0.20 -0.8
3,124,274 + CA264_13395 0.25 -1.5
3,124,274 + CA264_13395 0.25 +0.4
3,124,278 + CA264_13395 0.25 -0.2
3,124,278 + CA264_13395 0.25 -0.3
3,124,358 - CA264_13395 0.34 +1.0
3,124,358 - CA264_13395 0.34 +2.4
3,124,404 + CA264_13395 0.39 +0.0
3,124,404 + CA264_13395 0.39 -0.6
3,124,405 - CA264_13395 0.39 +0.8
3,124,463 - CA264_13395 0.45 -1.4
3,124,614 + CA264_13395 0.62 -1.4
3,124,614 + CA264_13395 0.62 -1.9
3,124,614 + CA264_13395 0.62 -1.1
3,124,614 + CA264_13395 0.62 -0.2
3,124,614 + CA264_13395 0.62 +1.4
3,124,615 - CA264_13395 0.62 -0.7
3,124,615 - CA264_13395 0.62 +1.2
3,124,651 + CA264_13395 0.66 +1.0
3,124,651 + CA264_13395 0.66 -1.3
3,124,693 - CA264_13395 0.70 +0.0
3,124,884 + -0.6
3,124,889 + -2.7
3,125,018 + +1.0
3,125,028 - +0.4
3,125,030 + -0.8
3,125,049 + +1.4
3,125,056 + +1.0
3,125,056 + -1.0
3,125,056 + -1.3
3,125,057 - -1.3
3,125,057 - +0.4
3,125,072 + -0.8
3,125,072 + +0.0
3,125,127 + -0.8
3,125,127 + -0.9
3,125,128 - -0.3
3,125,175 + +1.1
3,125,176 - -0.3
3,125,196 + -0.3
3,125,217 + CA264_13400 0.11 +0.0
3,125,217 + CA264_13400 0.11 -1.4
3,125,283 - CA264_13400 0.17 -0.8
3,125,283 - CA264_13400 0.17 -1.0
3,125,283 - CA264_13400 0.17 -2.8
3,125,283 - CA264_13400 0.17 -2.2
3,125,295 - CA264_13400 0.18 +0.0
3,125,392 - CA264_13400 0.25 -1.2
3,125,442 - CA264_13400 0.29 +1.0
3,125,456 - CA264_13400 0.31 -0.3
3,125,477 + CA264_13400 0.32 +0.2
3,125,478 - CA264_13400 0.32 -0.0
3,125,529 - CA264_13400 0.36 -1.8
3,125,679 - CA264_13400 0.48 +1.3
3,125,708 - CA264_13400 0.51 +0.5
3,125,708 - CA264_13400 0.51 -0.9
3,125,812 + CA264_13400 0.59 -0.8
3,125,893 + CA264_13400 0.66 -1.2
3,125,893 + CA264_13400 0.66 +2.6
3,125,897 + CA264_13400 0.66 -0.8
3,125,897 + CA264_13400 0.66 -0.5
3,125,912 + CA264_13400 0.67 +0.2
3,125,927 + CA264_13400 0.68 -0.6
3,125,928 - CA264_13400 0.68 -0.3
3,125,946 + CA264_13400 0.70 -1.3

Or see this region's nucleotide sequence