Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10855

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10850 and CA264_10855 overlap by 1 nucleotidesCA264_10855 and CA264_10860 are separated by 76 nucleotidesCA264_10860 and CA264_10865 are separated by 28 nucleotides CA264_10850: CA264_10850 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 2,508,054 to 2,509,517 _10850 CA264_10855: CA264_10855 - cell division protein, at 2,509,517 to 2,511,529 _10855 CA264_10860: CA264_10860 - hypothetical protein, at 2,511,606 to 2,512,037 _10860 CA264_10865: CA264_10865 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase, at 2,512,066 to 2,512,986 _10865 Position (kb) 2509 2510 2511 2512Strain fitness (log2 ratio) -2 -1 0 1 2at 2509.523 kb on - strandat 2509.526 kb on + strandat 2509.526 kb on + strandat 2509.527 kb on - strandat 2509.554 kb on - strandat 2509.638 kb on - strandat 2509.763 kb on - strand, within CA264_10855at 2511.596 kb on + strandat 2511.897 kb on + strand, within CA264_10860at 2511.907 kb on + strand, within CA264_10860at 2511.907 kb on + strand, within CA264_10860at 2512.024 kb on - strandat 2512.057 kb on + strandat 2512.058 kb on - strandat 2512.067 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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2,509,523 - -1.0
2,509,526 + -0.4
2,509,526 + -0.7
2,509,527 - +0.6
2,509,554 - -0.6
2,509,638 - -0.8
2,509,763 - CA264_10855 0.12 -1.6
2,511,596 + -0.7
2,511,897 + CA264_10860 0.67 +0.3
2,511,907 + CA264_10860 0.70 -1.1
2,511,907 + CA264_10860 0.70 -1.0
2,512,024 - +2.0
2,512,057 + -2.0
2,512,058 - -0.6
2,512,067 + +0.3

Or see this region's nucleotide sequence