Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10705

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10700 and CA264_10705 are separated by 4 nucleotidesCA264_10705 and CA264_10710 are separated by 32 nucleotidesCA264_10710 and CA264_10715 are separated by 333 nucleotides CA264_10700: CA264_10700 - stage II sporulation protein E, at 2,469,184 to 2,470,212 _10700 CA264_10705: CA264_10705 - histidine kinase, at 2,470,217 to 2,471,572 _10705 CA264_10710: CA264_10710 - response regulator, at 2,471,605 to 2,472,054 _10710 CA264_10715: CA264_10715 - hypothetical protein, at 2,472,388 to 2,472,684 _10715 Position (kb) 2470 2471 2472Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2469.230 kb on - strandat 2469.333 kb on + strand, within CA264_10700at 2469.334 kb on - strand, within CA264_10700at 2469.334 kb on - strand, within CA264_10700at 2469.396 kb on - strand, within CA264_10700at 2469.469 kb on + strand, within CA264_10700at 2469.639 kb on + strand, within CA264_10700at 2469.639 kb on + strand, within CA264_10700at 2469.640 kb on - strand, within CA264_10700at 2469.681 kb on - strand, within CA264_10700at 2469.698 kb on + strand, within CA264_10700at 2469.698 kb on + strand, within CA264_10700at 2469.698 kb on + strand, within CA264_10700at 2469.699 kb on - strand, within CA264_10700at 2469.699 kb on - strand, within CA264_10700at 2469.701 kb on - strand, within CA264_10700at 2469.773 kb on - strand, within CA264_10700at 2469.773 kb on - strand, within CA264_10700at 2469.863 kb on + strand, within CA264_10700at 2469.885 kb on + strand, within CA264_10700at 2469.886 kb on - strand, within CA264_10700at 2469.896 kb on - strand, within CA264_10700at 2469.929 kb on - strand, within CA264_10700at 2469.980 kb on - strand, within CA264_10700at 2469.980 kb on - strand, within CA264_10700at 2469.980 kb on - strand, within CA264_10700at 2470.059 kb on - strand, within CA264_10700at 2470.059 kb on - strand, within CA264_10700at 2470.150 kb on + strandat 2470.151 kb on - strandat 2470.196 kb on + strandat 2470.208 kb on + strandat 2470.209 kb on - strandat 2470.210 kb on + strandat 2470.210 kb on + strandat 2470.231 kb on - strandat 2470.234 kb on + strandat 2470.234 kb on + strandat 2470.235 kb on - strandat 2470.235 kb on - strandat 2470.263 kb on + strandat 2470.263 kb on + strandat 2470.264 kb on - strandat 2470.274 kb on + strandat 2470.377 kb on - strand, within CA264_10705at 2470.430 kb on + strand, within CA264_10705at 2470.446 kb on + strand, within CA264_10705at 2470.468 kb on - strand, within CA264_10705at 2470.468 kb on - strand, within CA264_10705at 2470.505 kb on + strand, within CA264_10705at 2470.505 kb on + strand, within CA264_10705at 2470.555 kb on - strand, within CA264_10705at 2470.710 kb on + strand, within CA264_10705at 2470.878 kb on + strand, within CA264_10705at 2470.879 kb on - strand, within CA264_10705at 2470.879 kb on - strand, within CA264_10705at 2470.879 kb on - strand, within CA264_10705at 2470.954 kb on - strand, within CA264_10705at 2471.212 kb on - strand, within CA264_10705at 2471.213 kb on + strand, within CA264_10705at 2471.235 kb on - strand, within CA264_10705at 2471.268 kb on + strand, within CA264_10705at 2471.269 kb on - strand, within CA264_10705at 2471.396 kb on - strand, within CA264_10705at 2471.402 kb on + strand, within CA264_10705at 2471.402 kb on + strand, within CA264_10705at 2471.402 kb on + strand, within CA264_10705at 2471.403 kb on - strand, within CA264_10705at 2471.588 kb on - strandat 2471.607 kb on - strandat 2471.672 kb on + strand, within CA264_10710at 2471.747 kb on - strand, within CA264_10710at 2471.749 kb on - strand, within CA264_10710at 2471.786 kb on + strand, within CA264_10710at 2471.895 kb on + strand, within CA264_10710at 2471.896 kb on - strand, within CA264_10710at 2471.978 kb on + strand, within CA264_10710at 2471.979 kb on - strand, within CA264_10710at 2472.027 kb on - strandat 2472.039 kb on + strandat 2472.065 kb on + strandat 2472.066 kb on - strandat 2472.066 kb on - strandat 2472.073 kb on + strandat 2472.073 kb on + strandat 2472.074 kb on - strandat 2472.139 kb on + strandat 2472.228 kb on + strandat 2472.234 kb on - strandat 2472.312 kb on - strandat 2472.312 kb on - strandat 2472.312 kb on - strandat 2472.312 kb on - strandat 2472.337 kb on - strandat 2472.339 kb on + strandat 2472.364 kb on - strandat 2472.382 kb on - strandat 2472.382 kb on - strandat 2472.388 kb on - strandat 2472.398 kb on - strandat 2472.485 kb on + strand, within CA264_10715at 2472.550 kb on - strand, within CA264_10715

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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2,469,230 - +0.3
2,469,333 + CA264_10700 0.14 -1.2
2,469,334 - CA264_10700 0.15 -1.7
2,469,334 - CA264_10700 0.15 -1.4
2,469,396 - CA264_10700 0.21 -0.4
2,469,469 + CA264_10700 0.28 -0.2
2,469,639 + CA264_10700 0.44 +0.6
2,469,639 + CA264_10700 0.44 +1.6
2,469,640 - CA264_10700 0.44 -1.8
2,469,681 - CA264_10700 0.48 -1.2
2,469,698 + CA264_10700 0.50 +1.6
2,469,698 + CA264_10700 0.50 +0.8
2,469,698 + CA264_10700 0.50 +0.2
2,469,699 - CA264_10700 0.50 +0.1
2,469,699 - CA264_10700 0.50 -0.9
2,469,701 - CA264_10700 0.50 +0.3
2,469,773 - CA264_10700 0.57 -0.8
2,469,773 - CA264_10700 0.57 -1.3
2,469,863 + CA264_10700 0.66 -0.0
2,469,885 + CA264_10700 0.68 -0.2
2,469,886 - CA264_10700 0.68 +0.6
2,469,896 - CA264_10700 0.69 -0.2
2,469,929 - CA264_10700 0.72 -1.9
2,469,980 - CA264_10700 0.77 +0.0
2,469,980 - CA264_10700 0.77 -1.7
2,469,980 - CA264_10700 0.77 -2.0
2,470,059 - CA264_10700 0.85 -0.1
2,470,059 - CA264_10700 0.85 +0.4
2,470,150 + -0.2
2,470,151 - -0.5
2,470,196 + +1.6
2,470,208 + -0.3
2,470,209 - +2.6
2,470,210 + +1.6
2,470,210 + +0.3
2,470,231 - +0.0
2,470,234 + -0.6
2,470,234 + -0.7
2,470,235 - -1.6
2,470,235 - -1.0
2,470,263 + -2.8
2,470,263 + -1.4
2,470,264 - +2.0
2,470,274 + +0.7
2,470,377 - CA264_10705 0.12 +0.2
2,470,430 + CA264_10705 0.16 -0.4
2,470,446 + CA264_10705 0.17 -0.8
2,470,468 - CA264_10705 0.19 -0.4
2,470,468 - CA264_10705 0.19 -0.5
2,470,505 + CA264_10705 0.21 -1.5
2,470,505 + CA264_10705 0.21 -1.5
2,470,555 - CA264_10705 0.25 +0.0
2,470,710 + CA264_10705 0.36 -0.4
2,470,878 + CA264_10705 0.49 +0.0
2,470,879 - CA264_10705 0.49 -1.8
2,470,879 - CA264_10705 0.49 -0.9
2,470,879 - CA264_10705 0.49 +0.3
2,470,954 - CA264_10705 0.54 +0.3
2,471,212 - CA264_10705 0.73 -1.3
2,471,213 + CA264_10705 0.73 +0.0
2,471,235 - CA264_10705 0.75 -1.7
2,471,268 + CA264_10705 0.78 -1.9
2,471,269 - CA264_10705 0.78 +1.0
2,471,396 - CA264_10705 0.87 +0.6
2,471,402 + CA264_10705 0.87 +2.2
2,471,402 + CA264_10705 0.87 -0.3
2,471,402 + CA264_10705 0.87 -1.3
2,471,403 - CA264_10705 0.87 +0.0
2,471,588 - +0.6
2,471,607 - -2.8
2,471,672 + CA264_10710 0.15 -0.5
2,471,747 - CA264_10710 0.32 -0.4
2,471,749 - CA264_10710 0.32 -0.7
2,471,786 + CA264_10710 0.40 -0.9
2,471,895 + CA264_10710 0.64 -2.7
2,471,896 - CA264_10710 0.65 +1.6
2,471,978 + CA264_10710 0.83 +1.0
2,471,979 - CA264_10710 0.83 -1.0
2,472,027 - +1.0
2,472,039 + +1.6
2,472,065 + -1.0
2,472,066 - -0.2
2,472,066 - -2.3
2,472,073 + -0.7
2,472,073 + -1.2
2,472,074 - +0.2
2,472,139 + -1.8
2,472,228 + -1.5
2,472,234 - -1.2
2,472,312 - -0.2
2,472,312 - +1.6
2,472,312 - +2.6
2,472,312 - -2.0
2,472,337 - +3.2
2,472,339 + +0.6
2,472,364 - +0.1
2,472,382 - +3.2
2,472,382 - -0.1
2,472,388 - +0.0
2,472,398 - +0.7
2,472,485 + CA264_10715 0.33 -1.4
2,472,550 - CA264_10715 0.55 -1.3

Or see this region's nucleotide sequence