Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09250

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09240 and CA264_09245 are separated by 16 nucleotidesCA264_09245 and CA264_09250 are separated by 38 nucleotidesCA264_09250 and CA264_09255 are separated by 85 nucleotides CA264_09240: CA264_09240 - aldehyde dehydrogenase, at 2,161,721 to 2,163,148 _09240 CA264_09245: CA264_09245 - hypothetical protein, at 2,163,165 to 2,163,536 _09245 CA264_09250: CA264_09250 - hemolysin, at 2,163,575 to 2,164,624 _09250 CA264_09255: CA264_09255 - isocitrate lyase, at 2,164,710 to 2,165,990 _09255 Position (kb) 2163 2164 2165Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2162.801 kb on - strand, within CA264_09240at 2162.882 kb on - strand, within CA264_09240at 2162.904 kb on + strand, within CA264_09240at 2162.905 kb on - strand, within CA264_09240at 2162.909 kb on + strand, within CA264_09240at 2162.910 kb on - strand, within CA264_09240at 2162.957 kb on - strand, within CA264_09240at 2162.959 kb on - strand, within CA264_09240at 2162.959 kb on - strand, within CA264_09240at 2162.986 kb on - strand, within CA264_09240at 2163.136 kb on + strandat 2163.234 kb on - strand, within CA264_09245at 2163.293 kb on + strand, within CA264_09245at 2163.394 kb on + strand, within CA264_09245at 2163.401 kb on + strand, within CA264_09245at 2163.403 kb on - strand, within CA264_09245at 2163.509 kb on - strandat 2163.509 kb on - strandat 2163.538 kb on + strandat 2163.545 kb on + strandat 2163.546 kb on - strandat 2163.682 kb on + strand, within CA264_09250at 2163.724 kb on + strand, within CA264_09250at 2163.725 kb on - strand, within CA264_09250at 2163.736 kb on - strand, within CA264_09250at 2163.736 kb on - strand, within CA264_09250at 2163.757 kb on - strand, within CA264_09250at 2163.760 kb on + strand, within CA264_09250at 2163.760 kb on + strand, within CA264_09250at 2163.769 kb on + strand, within CA264_09250at 2163.836 kb on + strand, within CA264_09250at 2163.941 kb on - strand, within CA264_09250at 2163.941 kb on - strand, within CA264_09250at 2163.968 kb on + strand, within CA264_09250at 2163.969 kb on - strand, within CA264_09250at 2164.097 kb on - strand, within CA264_09250at 2164.133 kb on - strand, within CA264_09250at 2164.299 kb on - strand, within CA264_09250at 2164.300 kb on + strand, within CA264_09250at 2164.377 kb on + strand, within CA264_09250at 2164.378 kb on - strand, within CA264_09250at 2164.378 kb on - strand, within CA264_09250at 2164.610 kb on + strandat 2164.622 kb on + strandat 2164.645 kb on + strandat 2164.645 kb on + strandat 2164.645 kb on + strandat 2164.646 kb on - strandat 2164.646 kb on - strandat 2164.674 kb on - strandat 2164.674 kb on - strandat 2164.678 kb on + strandat 2164.678 kb on + strandat 2164.679 kb on - strandat 2164.692 kb on + strandat 2164.701 kb on + strandat 2164.702 kb on - strandat 2164.702 kb on - strandat 2164.704 kb on + strandat 2164.704 kb on + strandat 2164.711 kb on + strandat 2164.733 kb on + strandat 2164.740 kb on + strandat 2164.741 kb on - strandat 2164.741 kb on - strandat 2165.028 kb on + strand, within CA264_09255at 2165.029 kb on - strand, within CA264_09255at 2165.033 kb on + strand, within CA264_09255at 2165.046 kb on - strand, within CA264_09255at 2165.064 kb on - strand, within CA264_09255at 2165.097 kb on + strand, within CA264_09255at 2165.176 kb on + strand, within CA264_09255at 2165.176 kb on + strand, within CA264_09255at 2165.257 kb on - strand, within CA264_09255at 2165.259 kb on - strand, within CA264_09255at 2165.466 kb on + strand, within CA264_09255at 2165.523 kb on - strand, within CA264_09255at 2165.566 kb on + strand, within CA264_09255at 2165.567 kb on - strand, within CA264_09255at 2165.567 kb on - strand, within CA264_09255at 2165.598 kb on + strand, within CA264_09255at 2165.598 kb on + strand, within CA264_09255at 2165.599 kb on - strand, within CA264_09255at 2165.599 kb on - strand, within CA264_09255

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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2,162,801 - CA264_09240 0.76 +0.8
2,162,882 - CA264_09240 0.81 -1.3
2,162,904 + CA264_09240 0.83 +2.3
2,162,905 - CA264_09240 0.83 -0.4
2,162,909 + CA264_09240 0.83 +3.4
2,162,910 - CA264_09240 0.83 +0.8
2,162,957 - CA264_09240 0.87 -0.7
2,162,959 - CA264_09240 0.87 +1.2
2,162,959 - CA264_09240 0.87 +0.4
2,162,986 - CA264_09240 0.89 -2.4
2,163,136 + +2.2
2,163,234 - CA264_09245 0.19 -0.5
2,163,293 + CA264_09245 0.34 +2.8
2,163,394 + CA264_09245 0.62 +4.0
2,163,401 + CA264_09245 0.63 +2.8
2,163,403 - CA264_09245 0.64 +1.1
2,163,509 - -0.9
2,163,509 - +1.8
2,163,538 + +1.3
2,163,545 + -1.3
2,163,546 - -1.0
2,163,682 + CA264_09250 0.10 -0.6
2,163,724 + CA264_09250 0.14 +0.3
2,163,725 - CA264_09250 0.14 +0.4
2,163,736 - CA264_09250 0.15 -1.2
2,163,736 - CA264_09250 0.15 +0.4
2,163,757 - CA264_09250 0.17 -0.7
2,163,760 + CA264_09250 0.18 -0.2
2,163,760 + CA264_09250 0.18 +1.8
2,163,769 + CA264_09250 0.18 +0.7
2,163,836 + CA264_09250 0.25 -0.7
2,163,941 - CA264_09250 0.35 -0.3
2,163,941 - CA264_09250 0.35 +1.1
2,163,968 + CA264_09250 0.37 -1.0
2,163,969 - CA264_09250 0.38 -1.1
2,164,097 - CA264_09250 0.50 -0.2
2,164,133 - CA264_09250 0.53 -0.4
2,164,299 - CA264_09250 0.69 +0.6
2,164,300 + CA264_09250 0.69 +0.3
2,164,377 + CA264_09250 0.76 +0.2
2,164,378 - CA264_09250 0.76 +0.2
2,164,378 - CA264_09250 0.76 +1.2
2,164,610 + +1.8
2,164,622 + -1.3
2,164,645 + +0.8
2,164,645 + -0.9
2,164,645 + -2.0
2,164,646 - +0.4
2,164,646 - +0.4
2,164,674 - +0.2
2,164,674 - -0.9
2,164,678 + +1.2
2,164,678 + -2.3
2,164,679 - -1.2
2,164,692 + +0.2
2,164,701 + +0.4
2,164,702 - -0.8
2,164,702 - -0.4
2,164,704 + -3.2
2,164,704 + -3.2
2,164,711 + +2.3
2,164,733 + +0.4
2,164,740 + +2.8
2,164,741 - -1.8
2,164,741 - +0.4
2,165,028 + CA264_09255 0.25 -2.2
2,165,029 - CA264_09255 0.25 -0.2
2,165,033 + CA264_09255 0.25 -0.5
2,165,046 - CA264_09255 0.26 +0.4
2,165,064 - CA264_09255 0.28 -1.0
2,165,097 + CA264_09255 0.30 -1.0
2,165,176 + CA264_09255 0.36 -0.6
2,165,176 + CA264_09255 0.36 -2.5
2,165,257 - CA264_09255 0.43 -1.3
2,165,259 - CA264_09255 0.43 -2.6
2,165,466 + CA264_09255 0.59 +1.2
2,165,523 - CA264_09255 0.63 -0.1
2,165,566 + CA264_09255 0.67 +0.1
2,165,567 - CA264_09255 0.67 -0.6
2,165,567 - CA264_09255 0.67 +0.4
2,165,598 + CA264_09255 0.69 +0.6
2,165,598 + CA264_09255 0.69 +0.1
2,165,599 - CA264_09255 0.69 -0.3
2,165,599 - CA264_09255 0.69 -0.4

Or see this region's nucleotide sequence