Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08870

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08865 and CA264_08870 are separated by 37 nucleotidesCA264_08870 and CA264_08875 are separated by 543 nucleotides CA264_08865: CA264_08865 - formimidoylglutamase, at 2,069,659 to 2,070,633 _08865 CA264_08870: CA264_08870 - imidazolonepropionase, at 2,070,671 to 2,071,924 _08870 CA264_08875: CA264_08875 - urocanate hydratase, at 2,072,468 to 2,074,171 _08875 Position (kb) 2070 2071 2072Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2069.691 kb on - strandat 2069.883 kb on + strand, within CA264_08865at 2069.897 kb on + strand, within CA264_08865at 2069.897 kb on + strand, within CA264_08865at 2069.897 kb on + strand, within CA264_08865at 2069.898 kb on - strand, within CA264_08865at 2069.898 kb on - strand, within CA264_08865at 2069.900 kb on - strand, within CA264_08865at 2069.900 kb on - strand, within CA264_08865at 2069.900 kb on - strand, within CA264_08865at 2069.941 kb on + strand, within CA264_08865at 2069.941 kb on + strand, within CA264_08865at 2069.942 kb on - strand, within CA264_08865at 2069.984 kb on + strand, within CA264_08865at 2070.137 kb on + strand, within CA264_08865at 2070.225 kb on - strand, within CA264_08865at 2070.357 kb on - strand, within CA264_08865at 2070.520 kb on + strand, within CA264_08865at 2070.521 kb on - strand, within CA264_08865at 2070.592 kb on + strandat 2070.593 kb on - strandat 2070.593 kb on - strandat 2070.593 kb on - strandat 2070.597 kb on + strandat 2070.598 kb on - strandat 2070.628 kb on - strandat 2070.628 kb on - strandat 2070.630 kb on - strandat 2070.630 kb on - strandat 2070.630 kb on - strandat 2070.633 kb on + strandat 2070.633 kb on + strandat 2070.633 kb on + strandat 2070.634 kb on - strandat 2070.666 kb on - strandat 2070.745 kb on + strandat 2070.751 kb on + strandat 2070.997 kb on - strand, within CA264_08870at 2071.067 kb on + strand, within CA264_08870at 2071.068 kb on - strand, within CA264_08870at 2071.147 kb on + strand, within CA264_08870at 2071.292 kb on + strand, within CA264_08870at 2071.317 kb on + strand, within CA264_08870at 2071.320 kb on - strand, within CA264_08870at 2071.532 kb on + strand, within CA264_08870at 2071.532 kb on + strand, within CA264_08870at 2071.572 kb on - strand, within CA264_08870at 2071.599 kb on - strand, within CA264_08870at 2071.599 kb on - strand, within CA264_08870at 2071.661 kb on - strand, within CA264_08870at 2071.677 kb on - strand, within CA264_08870at 2071.725 kb on + strand, within CA264_08870at 2071.916 kb on - strandat 2071.984 kb on + strandat 2071.984 kb on + strandat 2071.985 kb on - strandat 2072.069 kb on + strandat 2072.100 kb on + strandat 2072.125 kb on + strandat 2072.166 kb on + strandat 2072.173 kb on - strandat 2072.178 kb on + strandat 2072.256 kb on - strandat 2072.273 kb on - strandat 2072.315 kb on + strandat 2072.408 kb on + strandat 2072.411 kb on - strandat 2072.428 kb on + strandat 2072.453 kb on - strandat 2072.641 kb on + strand, within CA264_08875at 2072.641 kb on + strand, within CA264_08875at 2072.641 kb on + strand, within CA264_08875at 2072.645 kb on + strand, within CA264_08875at 2072.645 kb on + strand, within CA264_08875at 2072.646 kb on - strand, within CA264_08875at 2072.696 kb on - strand, within CA264_08875at 2072.696 kb on - strand, within CA264_08875at 2072.852 kb on - strand, within CA264_08875

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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2,069,691 - -0.9
2,069,883 + CA264_08865 0.23 +1.8
2,069,897 + CA264_08865 0.24 -1.4
2,069,897 + CA264_08865 0.24 -0.9
2,069,897 + CA264_08865 0.24 +0.3
2,069,898 - CA264_08865 0.25 -2.4
2,069,898 - CA264_08865 0.25 -0.4
2,069,900 - CA264_08865 0.25 -0.3
2,069,900 - CA264_08865 0.25 -1.2
2,069,900 - CA264_08865 0.25 -0.8
2,069,941 + CA264_08865 0.29 +1.8
2,069,941 + CA264_08865 0.29 -0.4
2,069,942 - CA264_08865 0.29 -1.1
2,069,984 + CA264_08865 0.33 +1.2
2,070,137 + CA264_08865 0.49 -0.7
2,070,225 - CA264_08865 0.58 -0.4
2,070,357 - CA264_08865 0.72 +0.5
2,070,520 + CA264_08865 0.88 +0.4
2,070,521 - CA264_08865 0.88 +0.8
2,070,592 + -1.6
2,070,593 - -0.7
2,070,593 - +0.2
2,070,593 - +1.2
2,070,597 + +1.8
2,070,598 - -1.9
2,070,628 - +0.1
2,070,628 - -1.5
2,070,630 - +0.6
2,070,630 - -1.3
2,070,630 - -1.3
2,070,633 + +0.1
2,070,633 + +1.2
2,070,633 + -1.7
2,070,634 - +0.5
2,070,666 - -3.2
2,070,745 + +1.5
2,070,751 + +0.2
2,070,997 - CA264_08870 0.26 +2.8
2,071,067 + CA264_08870 0.32 +2.8
2,071,068 - CA264_08870 0.32 -1.7
2,071,147 + CA264_08870 0.38 -0.2
2,071,292 + CA264_08870 0.50 +1.1
2,071,317 + CA264_08870 0.52 -0.0
2,071,320 - CA264_08870 0.52 -0.2
2,071,532 + CA264_08870 0.69 -0.0
2,071,532 + CA264_08870 0.69 -1.2
2,071,572 - CA264_08870 0.72 +2.2
2,071,599 - CA264_08870 0.74 +2.2
2,071,599 - CA264_08870 0.74 +1.8
2,071,661 - CA264_08870 0.79 +1.2
2,071,677 - CA264_08870 0.80 -1.8
2,071,725 + CA264_08870 0.84 +1.2
2,071,916 - -0.5
2,071,984 + +1.2
2,071,984 + -1.4
2,071,985 - -1.7
2,072,069 + +1.5
2,072,100 + -0.0
2,072,125 + -1.9
2,072,166 + -0.0
2,072,173 - -0.5
2,072,178 + +0.5
2,072,256 - -1.5
2,072,273 - -1.6
2,072,315 + -1.5
2,072,408 + -0.8
2,072,411 - -1.7
2,072,428 + +1.6
2,072,453 - -0.4
2,072,641 + CA264_08875 0.10 -0.2
2,072,641 + CA264_08875 0.10 -0.2
2,072,641 + CA264_08875 0.10 +0.8
2,072,645 + CA264_08875 0.10 -0.9
2,072,645 + CA264_08875 0.10 -1.0
2,072,646 - CA264_08875 0.10 -1.4
2,072,696 - CA264_08875 0.13 -1.4
2,072,696 - CA264_08875 0.13 +1.0
2,072,852 - CA264_08875 0.23 -1.7

Or see this region's nucleotide sequence