Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07040

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07035 and CA264_07040 overlap by 23 nucleotidesCA264_07040 and CA264_07045 are separated by 243 nucleotides CA264_07035: CA264_07035 - hypothetical protein, at 1,621,722 to 1,622,843 _07035 CA264_07040: CA264_07040 - 8-amino-7-oxononanoate synthase, at 1,622,821 to 1,624,062 _07040 CA264_07045: CA264_07045 - TetR family transcriptional regulator, at 1,624,306 to 1,624,896 _07045 Position (kb) 1622 1623 1624 1625Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1621.873 kb on + strand, within CA264_07035at 1621.965 kb on + strand, within CA264_07035at 1621.966 kb on - strand, within CA264_07035at 1621.970 kb on + strand, within CA264_07035at 1621.970 kb on + strand, within CA264_07035at 1621.970 kb on + strand, within CA264_07035at 1621.971 kb on - strand, within CA264_07035at 1621.971 kb on - strand, within CA264_07035at 1622.026 kb on - strand, within CA264_07035at 1622.036 kb on + strand, within CA264_07035at 1622.077 kb on - strand, within CA264_07035at 1622.126 kb on - strand, within CA264_07035at 1622.186 kb on - strand, within CA264_07035at 1622.218 kb on + strand, within CA264_07035at 1622.218 kb on + strand, within CA264_07035at 1622.219 kb on - strand, within CA264_07035at 1622.219 kb on - strand, within CA264_07035at 1622.250 kb on - strand, within CA264_07035at 1622.277 kb on + strand, within CA264_07035at 1622.278 kb on - strand, within CA264_07035at 1622.308 kb on + strand, within CA264_07035at 1622.386 kb on + strand, within CA264_07035at 1622.387 kb on - strand, within CA264_07035at 1622.392 kb on + strand, within CA264_07035at 1622.398 kb on + strand, within CA264_07035at 1622.740 kb on + strandat 1622.741 kb on - strandat 1622.741 kb on - strandat 1622.755 kb on + strandat 1622.756 kb on - strandat 1622.756 kb on - strandat 1622.758 kb on + strandat 1622.774 kb on - strandat 1622.843 kb on + strandat 1622.843 kb on + strandat 1622.844 kb on - strandat 1622.844 kb on - strandat 1622.860 kb on - strandat 1622.860 kb on - strandat 1622.860 kb on - strandat 1622.877 kb on + strandat 1622.896 kb on - strandat 1622.951 kb on - strand, within CA264_07040at 1622.958 kb on + strand, within CA264_07040at 1623.060 kb on - strand, within CA264_07040at 1623.063 kb on + strand, within CA264_07040at 1623.064 kb on - strand, within CA264_07040at 1623.064 kb on - strand, within CA264_07040at 1623.064 kb on - strand, within CA264_07040at 1623.064 kb on - strand, within CA264_07040at 1623.067 kb on + strand, within CA264_07040at 1623.067 kb on + strand, within CA264_07040at 1623.068 kb on - strand, within CA264_07040at 1623.274 kb on - strand, within CA264_07040at 1623.327 kb on + strand, within CA264_07040at 1623.422 kb on - strand, within CA264_07040at 1623.422 kb on - strand, within CA264_07040at 1623.422 kb on - strand, within CA264_07040at 1623.422 kb on - strand, within CA264_07040at 1623.492 kb on + strand, within CA264_07040at 1623.571 kb on - strand, within CA264_07040at 1623.584 kb on + strand, within CA264_07040at 1623.584 kb on + strand, within CA264_07040at 1623.628 kb on - strand, within CA264_07040at 1623.657 kb on + strand, within CA264_07040at 1623.658 kb on - strand, within CA264_07040at 1623.659 kb on + strand, within CA264_07040at 1623.660 kb on - strand, within CA264_07040at 1623.687 kb on + strand, within CA264_07040at 1623.847 kb on - strand, within CA264_07040at 1623.865 kb on - strand, within CA264_07040at 1623.877 kb on - strand, within CA264_07040at 1623.877 kb on - strand, within CA264_07040at 1623.877 kb on - strand, within CA264_07040at 1623.877 kb on - strand, within CA264_07040at 1624.207 kb on + strandat 1624.210 kb on + strandat 1624.249 kb on + strandat 1624.257 kb on + strandat 1624.258 kb on - strandat 1624.330 kb on + strandat 1624.332 kb on + strandat 1624.457 kb on + strand, within CA264_07045at 1624.458 kb on - strand, within CA264_07045at 1624.458 kb on - strand, within CA264_07045at 1624.548 kb on + strand, within CA264_07045at 1624.549 kb on - strand, within CA264_07045at 1624.549 kb on - strand, within CA264_07045at 1624.552 kb on - strand, within CA264_07045at 1624.632 kb on + strand, within CA264_07045at 1624.747 kb on - strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.754 kb on + strand, within CA264_07045at 1624.754 kb on + strand, within CA264_07045at 1624.755 kb on - strand, within CA264_07045at 1624.800 kb on + strand, within CA264_07045at 1624.829 kb on + strand, within CA264_07045at 1625.007 kb on + strandat 1625.008 kb on - strandat 1625.008 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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1,621,873 + CA264_07035 0.13 -3.5
1,621,965 + CA264_07035 0.22 -0.9
1,621,966 - CA264_07035 0.22 +0.1
1,621,970 + CA264_07035 0.22 -2.1
1,621,970 + CA264_07035 0.22 +0.8
1,621,970 + CA264_07035 0.22 -0.4
1,621,971 - CA264_07035 0.22 -1.2
1,621,971 - CA264_07035 0.22 -0.5
1,622,026 - CA264_07035 0.27 +0.2
1,622,036 + CA264_07035 0.28 +0.8
1,622,077 - CA264_07035 0.32 +0.5
1,622,126 - CA264_07035 0.36 -1.6
1,622,186 - CA264_07035 0.41 +0.2
1,622,218 + CA264_07035 0.44 +0.4
1,622,218 + CA264_07035 0.44 +1.2
1,622,219 - CA264_07035 0.44 -1.3
1,622,219 - CA264_07035 0.44 +0.2
1,622,250 - CA264_07035 0.47 -1.6
1,622,277 + CA264_07035 0.49 +0.1
1,622,278 - CA264_07035 0.50 -1.4
1,622,308 + CA264_07035 0.52 -0.4
1,622,386 + CA264_07035 0.59 +2.6
1,622,387 - CA264_07035 0.59 -0.2
1,622,392 + CA264_07035 0.60 -0.9
1,622,398 + CA264_07035 0.60 -2.1
1,622,740 + -2.1
1,622,741 - +0.0
1,622,741 - -0.4
1,622,755 + -0.5
1,622,756 - -0.5
1,622,756 - +0.5
1,622,758 + +0.6
1,622,774 - +1.2
1,622,843 + -0.6
1,622,843 + +0.0
1,622,844 - -0.5
1,622,844 - +0.0
1,622,860 - +0.8
1,622,860 - -1.2
1,622,860 - +2.2
1,622,877 + +0.1
1,622,896 - -0.4
1,622,951 - CA264_07040 0.10 -0.8
1,622,958 + CA264_07040 0.11 -1.6
1,623,060 - CA264_07040 0.19 +0.1
1,623,063 + CA264_07040 0.19 +1.0
1,623,064 - CA264_07040 0.20 -2.5
1,623,064 - CA264_07040 0.20 -2.6
1,623,064 - CA264_07040 0.20 +2.8
1,623,064 - CA264_07040 0.20 -1.3
1,623,067 + CA264_07040 0.20 +0.8
1,623,067 + CA264_07040 0.20 -1.6
1,623,068 - CA264_07040 0.20 +0.8
1,623,274 - CA264_07040 0.36 -1.7
1,623,327 + CA264_07040 0.41 +2.8
1,623,422 - CA264_07040 0.48 +0.2
1,623,422 - CA264_07040 0.48 +1.2
1,623,422 - CA264_07040 0.48 +1.8
1,623,422 - CA264_07040 0.48 -0.8
1,623,492 + CA264_07040 0.54 +0.5
1,623,571 - CA264_07040 0.60 +0.2
1,623,584 + CA264_07040 0.61 +0.8
1,623,584 + CA264_07040 0.61 -0.0
1,623,628 - CA264_07040 0.65 +2.8
1,623,657 + CA264_07040 0.67 +0.2
1,623,658 - CA264_07040 0.67 -1.3
1,623,659 + CA264_07040 0.67 +2.8
1,623,660 - CA264_07040 0.68 +0.8
1,623,687 + CA264_07040 0.70 +1.2
1,623,847 - CA264_07040 0.83 +0.2
1,623,865 - CA264_07040 0.84 -0.6
1,623,877 - CA264_07040 0.85 -1.9
1,623,877 - CA264_07040 0.85 +2.8
1,623,877 - CA264_07040 0.85 +2.8
1,623,877 - CA264_07040 0.85 -2.2
1,624,207 + -0.4
1,624,210 + +0.2
1,624,249 + -0.8
1,624,257 + +0.3
1,624,258 - +0.4
1,624,330 + -0.5
1,624,332 + +0.7
1,624,457 + CA264_07045 0.26 -0.5
1,624,458 - CA264_07045 0.26 +0.0
1,624,458 - CA264_07045 0.26 +1.1
1,624,548 + CA264_07045 0.41 -0.5
1,624,549 - CA264_07045 0.41 +0.8
1,624,549 - CA264_07045 0.41 +1.2
1,624,552 - CA264_07045 0.42 +0.0
1,624,632 + CA264_07045 0.55 -0.5
1,624,747 - CA264_07045 0.75 +0.5
1,624,752 + CA264_07045 0.75 +1.5
1,624,752 + CA264_07045 0.75 +2.8
1,624,752 + CA264_07045 0.75 -1.2
1,624,752 + CA264_07045 0.75 -1.4
1,624,754 + CA264_07045 0.76 +0.8
1,624,754 + CA264_07045 0.76 -0.8
1,624,755 - CA264_07045 0.76 -0.2
1,624,800 + CA264_07045 0.84 +0.6
1,624,829 + CA264_07045 0.88 -0.3
1,625,007 + +0.6
1,625,008 - -0.3
1,625,008 - -0.4

Or see this region's nucleotide sequence