Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3341 and Atu3342 are separated by 57 nucleotides Atu3342 and Atu3343 are separated by 6 nucleotides Atu3343 and Atu3344 are separated by 33 nucleotides Atu3344 and Atu3345 overlap by 4 nucleotides
Atu3341: Atu3341 - trehalose/maltose ABC transporter ATPase, at 375,622 to 376,650
Atu3341
Atu3342: Atu3342 - trehalose utilization-like protein, at 376,708 to 377,493
Atu3342
Atu3343: Atu3343 - trehalose utilization-like protein, at 377,500 to 378,549
Atu3343
Atu3344: Atu3344 - radical activating protein, at 378,583 to 379,338
Atu3344
Atu3345: Atu3345 - 6-pyruvoyl tetrahydrobiopterin synthase, at 379,335 to 379,691
Atu3345
Position (kb) 377
378
379 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 376.630 kb on + strand at 376.729 kb on - strand at 376.799 kb on - strand, within Atu3342 at 376.833 kb on - strand, within Atu3342 at 376.859 kb on + strand, within Atu3342 at 376.944 kb on + strand, within Atu3342 at 376.984 kb on + strand, within Atu3342 at 376.985 kb on + strand, within Atu3342 at 376.998 kb on - strand, within Atu3342 at 377.163 kb on + strand, within Atu3342 at 377.171 kb on - strand, within Atu3342 at 377.228 kb on - strand, within Atu3342 at 377.307 kb on - strand, within Atu3342 at 377.393 kb on + strand, within Atu3342 at 377.459 kb on + strand at 377.461 kb on - strand at 377.461 kb on - strand at 377.490 kb on - strand at 377.618 kb on + strand, within Atu3343 at 377.654 kb on - strand, within Atu3343 at 377.858 kb on - strand, within Atu3343 at 377.894 kb on - strand, within Atu3343 at 377.958 kb on - strand, within Atu3343 at 378.025 kb on + strand, within Atu3343 at 378.075 kb on - strand, within Atu3343 at 378.123 kb on + strand, within Atu3343 at 378.131 kb on - strand, within Atu3343 at 378.131 kb on - strand, within Atu3343 at 378.251 kb on - strand, within Atu3343 at 378.269 kb on + strand, within Atu3343 at 378.273 kb on + strand, within Atu3343 at 378.299 kb on - strand, within Atu3343 at 378.329 kb on + strand, within Atu3343 at 378.514 kb on + strand at 378.602 kb on + strand at 378.602 kb on + strand at 378.602 kb on + strand at 378.670 kb on - strand, within Atu3344 at 378.696 kb on - strand, within Atu3344 at 378.712 kb on - strand, within Atu3344 at 378.764 kb on - strand, within Atu3344 at 378.857 kb on - strand, within Atu3344 at 378.880 kb on + strand, within Atu3344 at 378.882 kb on + strand, within Atu3344 at 379.006 kb on + strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.110 kb on - strand, within Atu3344 at 379.161 kb on - strand, within Atu3344 at 379.189 kb on - strand, within Atu3344 at 379.287 kb on - strand at 379.321 kb on - strand at 379.365 kb on - strand at 379.462 kb on - strand, within Atu3345 at 379.542 kb on + strand, within Atu3345
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 376,630 + +0.5 376,729 - -7.2 376,799 - Atu3342 0.12 -3.0 376,833 - Atu3342 0.16 -4.3 376,859 + Atu3342 0.19 -1.1 376,944 + Atu3342 0.30 -2.5 376,984 + Atu3342 0.35 -2.9 376,985 + Atu3342 0.35 -3.4 376,998 - Atu3342 0.37 -3.0 377,163 + Atu3342 0.58 -4.5 377,171 - Atu3342 0.59 -6.1 377,228 - Atu3342 0.66 -1.9 377,307 - Atu3342 0.76 -4.9 377,393 + Atu3342 0.87 -3.8 377,459 + -5.4 377,461 - -5.3 377,461 - -4.5 377,490 - -4.6 377,618 + Atu3343 0.11 -2.2 377,654 - Atu3343 0.15 -3.9 377,858 - Atu3343 0.34 -3.9 377,894 - Atu3343 0.38 -5.5 377,958 - Atu3343 0.44 -3.0 378,025 + Atu3343 0.50 -3.5 378,075 - Atu3343 0.55 -4.5 378,123 + Atu3343 0.59 -4.9 378,131 - Atu3343 0.60 -2.8 378,131 - Atu3343 0.60 -4.1 378,251 - Atu3343 0.72 -4.8 378,269 + Atu3343 0.73 -3.8 378,273 + Atu3343 0.74 -4.1 378,299 - Atu3343 0.76 -5.6 378,329 + Atu3343 0.79 -5.5 378,514 + -2.8 378,602 + -0.9 378,602 + +0.5 378,602 + +1.2 378,670 - Atu3344 0.12 -0.1 378,696 - Atu3344 0.15 -0.7 378,712 - Atu3344 0.17 +0.1 378,764 - Atu3344 0.24 -0.3 378,857 - Atu3344 0.36 +0.1 378,880 + Atu3344 0.39 -0.7 378,882 + Atu3344 0.40 -0.1 379,006 + Atu3344 0.56 +0.2 379,014 - Atu3344 0.57 +0.2 379,014 - Atu3344 0.57 +0.4 379,014 - Atu3344 0.57 -0.3 379,110 - Atu3344 0.70 +0.3 379,161 - Atu3344 0.76 -0.4 379,189 - Atu3344 0.80 -1.0 379,287 - +0.4 379,321 - +0.4 379,365 - -1.8 379,462 - Atu3345 0.36 +0.2 379,542 + Atu3345 0.58 -0.3
Or see this region's nucleotide sequence