Experiment: acetate 70 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yphC and yphD are separated by 65 nucleotides yphD and yphE are separated by 24 nucleotides
b2545: yphC - putative oxidoreductase (VIMSS), at 2,672,722 to 2,673,783
yphC
b2546: yphD - predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI), at 2,673,849 to 2,674,847
yphD
b2547: yphE - fused predicted sugar transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 2,674,872 to 2,676,383
yphE
Position (kb)
2673
2674
2675 Strain fitness (log2 ratio)
-2
-1
0
1 at 2672.870 kb on + strand, within yphC at 2672.906 kb on - strand, within yphC at 2672.908 kb on + strand, within yphC at 2672.988 kb on + strand, within yphC at 2673.134 kb on - strand, within yphC at 2673.165 kb on + strand, within yphC at 2673.173 kb on + strand, within yphC at 2673.173 kb on + strand, within yphC at 2673.231 kb on + strand, within yphC at 2673.231 kb on + strand, within yphC at 2673.289 kb on + strand, within yphC at 2673.578 kb on - strand, within yphC at 2673.578 kb on - strand, within yphC at 2673.578 kb on - strand, within yphC at 2673.693 kb on + strand at 2673.800 kb on - strand at 2673.959 kb on + strand, within yphD at 2674.037 kb on + strand, within yphD at 2674.303 kb on - strand, within yphD at 2674.305 kb on + strand, within yphD at 2674.308 kb on - strand, within yphD at 2674.350 kb on + strand, within yphD at 2674.350 kb on + strand, within yphD at 2674.350 kb on + strand, within yphD at 2674.358 kb on - strand, within yphD at 2674.358 kb on - strand, within yphD at 2674.358 kb on - strand, within yphD at 2674.381 kb on + strand, within yphD at 2674.457 kb on + strand, within yphD at 2674.457 kb on + strand, within yphD at 2674.466 kb on - strand, within yphD at 2674.466 kb on - strand, within yphD at 2674.476 kb on - strand, within yphD at 2674.532 kb on - strand, within yphD at 2674.836 kb on - strand at 2674.884 kb on - strand at 2674.904 kb on + strand at 2674.904 kb on + strand at 2675.002 kb on + strand at 2675.130 kb on - strand, within yphE at 2675.252 kb on - strand, within yphE at 2675.436 kb on - strand, within yphE at 2675.657 kb on + strand, within yphE at 2675.657 kb on + strand, within yphE at 2675.706 kb on - strand, within yphE
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 70 mM remove 2,672,870 + yphC b2545 0.14 -0.7 2,672,906 - yphC b2545 0.17 -0.6 2,672,908 + yphC b2545 0.18 -0.1 2,672,988 + yphC b2545 0.25 +0.3 2,673,134 - yphC b2545 0.39 +0.3 2,673,165 + yphC b2545 0.42 -0.3 2,673,173 + yphC b2545 0.42 -1.4 2,673,173 + yphC b2545 0.42 -0.1 2,673,231 + yphC b2545 0.48 -0.7 2,673,231 + yphC b2545 0.48 +0.9 2,673,289 + yphC b2545 0.53 -0.4 2,673,578 - yphC b2545 0.81 -0.1 2,673,578 - yphC b2545 0.81 -2.3 2,673,578 - yphC b2545 0.81 +0.6 2,673,693 + -1.8 2,673,800 - +1.2 2,673,959 + yphD b2546 0.11 -0.7 2,674,037 + yphD b2546 0.19 -0.2 2,674,303 - yphD b2546 0.45 +0.8 2,674,305 + yphD b2546 0.46 -0.7 2,674,308 - yphD b2546 0.46 +0.2 2,674,350 + yphD b2546 0.50 +1.5 2,674,350 + yphD b2546 0.50 +0.6 2,674,350 + yphD b2546 0.50 +0.9 2,674,358 - yphD b2546 0.51 +0.5 2,674,358 - yphD b2546 0.51 +1.0 2,674,358 - yphD b2546 0.51 -0.5 2,674,381 + yphD b2546 0.53 +0.6 2,674,457 + yphD b2546 0.61 +1.1 2,674,457 + yphD b2546 0.61 +0.9 2,674,466 - yphD b2546 0.62 -0.3 2,674,466 - yphD b2546 0.62 +0.3 2,674,476 - yphD b2546 0.63 +0.9 2,674,532 - yphD b2546 0.68 +1.5 2,674,836 - +0.6 2,674,884 - +0.2 2,674,904 + +0.2 2,674,904 + +0.1 2,675,002 + -0.3 2,675,130 - yphE b2547 0.17 +0.1 2,675,252 - yphE b2547 0.25 +1.5 2,675,436 - yphE b2547 0.37 +1.2 2,675,657 + yphE b2547 0.52 +0.9 2,675,657 + yphE b2547 0.52 -1.3 2,675,706 - yphE b2547 0.55 -1.0
Or see this region's nucleotide sequence