Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_455 and PfGW456L13_456 are separated by 185 nucleotides PfGW456L13_456 and PfGW456L13_457 are separated by 99 nucleotides PfGW456L13_457 and PfGW456L13_458 overlap by 4 nucleotides
PfGW456L13_455 - hypothetical protein, at 519,527 to 519,865
_455
PfGW456L13_456 - SAM-dependent methyltransferases, at 520,051 to 520,680
_456
PfGW456L13_457 - RND efflux transporter, at 520,780 to 523,830
_457
PfGW456L13_458 - Efflux membrane fusion protein, RND family, at 523,827 to 524,891
_458
Position (kb) 520
521
522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 519.838 kb on + strand at 519.838 kb on + strand at 519.838 kb on + strand at 519.838 kb on + strand at 519.839 kb on - strand at 519.839 kb on - strand at 519.882 kb on - strand at 520.014 kb on + strand at 520.014 kb on + strand at 520.014 kb on + strand at 520.015 kb on - strand at 520.015 kb on - strand at 520.015 kb on - strand at 520.015 kb on - strand at 520.015 kb on - strand at 520.015 kb on - strand at 520.015 kb on - strand at 520.016 kb on + strand at 520.017 kb on - strand at 520.105 kb on + strand at 520.105 kb on + strand at 520.105 kb on + strand at 520.106 kb on - strand at 520.106 kb on - strand at 520.106 kb on - strand at 520.260 kb on + strand, within PfGW456L13_456 at 520.261 kb on - strand, within PfGW456L13_456 at 520.547 kb on - strand, within PfGW456L13_456 at 520.547 kb on - strand, within PfGW456L13_456 at 520.547 kb on - strand, within PfGW456L13_456 at 520.609 kb on + strand, within PfGW456L13_456 at 520.609 kb on + strand, within PfGW456L13_456 at 520.609 kb on + strand, within PfGW456L13_456 at 520.610 kb on - strand, within PfGW456L13_456 at 520.613 kb on - strand, within PfGW456L13_456 at 520.613 kb on - strand, within PfGW456L13_456 at 520.668 kb on + strand at 520.669 kb on - strand at 520.678 kb on + strand at 520.814 kb on + strand at 520.815 kb on - strand at 520.826 kb on + strand at 520.826 kb on + strand at 520.826 kb on + strand at 520.826 kb on + strand at 520.827 kb on - strand at 520.827 kb on - strand at 520.827 kb on - strand at 520.827 kb on - strand at 521.030 kb on + strand at 521.031 kb on - strand at 521.076 kb on + strand at 521.077 kb on - strand at 521.302 kb on - strand, within PfGW456L13_457 at 521.302 kb on - strand, within PfGW456L13_457 at 521.322 kb on - strand, within PfGW456L13_457 at 521.472 kb on - strand, within PfGW456L13_457 at 521.597 kb on + strand, within PfGW456L13_457 at 521.597 kb on + strand, within PfGW456L13_457 at 521.597 kb on + strand, within PfGW456L13_457 at 521.597 kb on + strand, within PfGW456L13_457 at 521.744 kb on + strand, within PfGW456L13_457 at 521.745 kb on - strand, within PfGW456L13_457 at 521.745 kb on - strand, within PfGW456L13_457 at 521.745 kb on - strand, within PfGW456L13_457 at 521.745 kb on - strand, within PfGW456L13_457 at 521.888 kb on + strand, within PfGW456L13_457 at 521.888 kb on + strand, within PfGW456L13_457 at 521.889 kb on - strand, within PfGW456L13_457 at 521.889 kb on - strand, within PfGW456L13_457 at 521.889 kb on - strand, within PfGW456L13_457 at 521.889 kb on - strand, within PfGW456L13_457 at 521.889 kb on - strand, within PfGW456L13_457 at 521.889 kb on - strand, within PfGW456L13_457 at 522.023 kb on + strand, within PfGW456L13_457 at 522.023 kb on + strand, within PfGW456L13_457 at 522.023 kb on + strand, within PfGW456L13_457 at 522.023 kb on + strand, within PfGW456L13_457 at 522.023 kb on + strand, within PfGW456L13_457 at 522.024 kb on - strand, within PfGW456L13_457 at 522.050 kb on + strand, within PfGW456L13_457 at 522.050 kb on + strand, within PfGW456L13_457 at 522.050 kb on + strand, within PfGW456L13_457 at 522.050 kb on + strand, within PfGW456L13_457 at 522.050 kb on + strand, within PfGW456L13_457 at 522.050 kb on + strand, within PfGW456L13_457 at 522.050 kb on + strand, within PfGW456L13_457 at 522.050 kb on + strand, within PfGW456L13_457 at 522.051 kb on - strand, within PfGW456L13_457 at 522.051 kb on - strand, within PfGW456L13_457 at 522.051 kb on - strand, within PfGW456L13_457 at 522.051 kb on - strand, within PfGW456L13_457 at 522.051 kb on - strand, within PfGW456L13_457 at 522.051 kb on - strand, within PfGW456L13_457 at 522.051 kb on - strand, within PfGW456L13_457 at 522.051 kb on - strand, within PfGW456L13_457 at 522.207 kb on - strand, within PfGW456L13_457 at 522.207 kb on - strand, within PfGW456L13_457 at 522.207 kb on - strand, within PfGW456L13_457 at 522.207 kb on - strand, within PfGW456L13_457 at 522.241 kb on + strand, within PfGW456L13_457 at 522.242 kb on - strand, within PfGW456L13_457 at 522.385 kb on + strand, within PfGW456L13_457 at 522.440 kb on + strand, within PfGW456L13_457 at 522.440 kb on + strand, within PfGW456L13_457 at 522.440 kb on + strand, within PfGW456L13_457 at 522.440 kb on + strand, within PfGW456L13_457 at 522.440 kb on + strand, within PfGW456L13_457 at 522.440 kb on + strand, within PfGW456L13_457 at 522.440 kb on + strand, within PfGW456L13_457 at 522.440 kb on + strand, within PfGW456L13_457 at 522.441 kb on - strand, within PfGW456L13_457 at 522.441 kb on - strand, within PfGW456L13_457 at 522.441 kb on - strand, within PfGW456L13_457 at 522.441 kb on - strand, within PfGW456L13_457 at 522.441 kb on - strand, within PfGW456L13_457 at 522.441 kb on - strand, within PfGW456L13_457 at 522.441 kb on - strand, within PfGW456L13_457 at 522.446 kb on + strand, within PfGW456L13_457 at 522.446 kb on + strand, within PfGW456L13_457 at 522.446 kb on + strand, within PfGW456L13_457 at 522.447 kb on - strand, within PfGW456L13_457 at 522.447 kb on - strand, within PfGW456L13_457 at 522.447 kb on - strand, within PfGW456L13_457 at 522.539 kb on + strand, within PfGW456L13_457 at 522.540 kb on - strand, within PfGW456L13_457 at 522.588 kb on + strand, within PfGW456L13_457 at 522.588 kb on + strand, within PfGW456L13_457 at 522.588 kb on + strand, within PfGW456L13_457 at 522.686 kb on + strand, within PfGW456L13_457 at 522.686 kb on + strand, within PfGW456L13_457 at 522.784 kb on + strand, within PfGW456L13_457 at 522.784 kb on + strand, within PfGW456L13_457 at 522.784 kb on + strand, within PfGW456L13_457 at 522.784 kb on + strand, within PfGW456L13_457 at 522.785 kb on - strand, within PfGW456L13_457 at 522.785 kb on - strand, within PfGW456L13_457 at 522.909 kb on + strand, within PfGW456L13_457 at 523.025 kb on + strand, within PfGW456L13_457 at 523.026 kb on - strand, within PfGW456L13_457 at 523.061 kb on + strand, within PfGW456L13_457 at 523.061 kb on + strand, within PfGW456L13_457 at 523.061 kb on + strand, within PfGW456L13_457 at 523.062 kb on - strand, within PfGW456L13_457 at 523.062 kb on - strand, within PfGW456L13_457 at 523.062 kb on - strand, within PfGW456L13_457 at 523.062 kb on - strand, within PfGW456L13_457 at 523.062 kb on - strand, within PfGW456L13_457 at 523.062 kb on - strand, within PfGW456L13_457 at 523.262 kb on + strand, within PfGW456L13_457 at 523.263 kb on - strand, within PfGW456L13_457 at 523.347 kb on - strand, within PfGW456L13_457 at 523.391 kb on + strand, within PfGW456L13_457 at 523.391 kb on + strand, within PfGW456L13_457 at 523.391 kb on + strand, within PfGW456L13_457 at 523.391 kb on + strand, within PfGW456L13_457 at 523.441 kb on + strand, within PfGW456L13_457 at 523.442 kb on - strand, within PfGW456L13_457 at 523.442 kb on - strand, within PfGW456L13_457 at 523.442 kb on - strand, within PfGW456L13_457 at 523.442 kb on - strand, within PfGW456L13_457 at 523.442 kb on - strand, within PfGW456L13_457 at 523.460 kb on + strand, within PfGW456L13_457 at 523.460 kb on + strand, within PfGW456L13_457 at 523.461 kb on - strand, within PfGW456L13_457 at 523.461 kb on - strand, within PfGW456L13_457 at 523.493 kb on + strand, within PfGW456L13_457 at 523.494 kb on - strand, within PfGW456L13_457 at 523.544 kb on + strand at 523.544 kb on + strand at 523.544 kb on + strand at 523.544 kb on + strand at 523.544 kb on + strand at 523.544 kb on + strand at 523.545 kb on - strand at 523.545 kb on - strand at 523.545 kb on - strand at 523.545 kb on - strand at 523.545 kb on - strand at 523.545 kb on - strand at 523.571 kb on + strand at 523.572 kb on - strand at 523.583 kb on + strand at 523.583 kb on + strand at 523.583 kb on + strand at 523.583 kb on + strand at 523.583 kb on + strand at 523.583 kb on + strand at 523.583 kb on + strand at 523.583 kb on + strand at 523.583 kb on + strand at 523.584 kb on - strand at 523.584 kb on - strand at 523.584 kb on - strand at 523.733 kb on + strand at 523.734 kb on - strand at 523.982 kb on + strand, within PfGW456L13_458 at 523.982 kb on + strand, within PfGW456L13_458 at 524.384 kb on + strand, within PfGW456L13_458 at 524.385 kb on - strand, within PfGW456L13_458 at 524.407 kb on + strand, within PfGW456L13_458 at 524.408 kb on - strand, within PfGW456L13_458 at 524.408 kb on - strand, within PfGW456L13_458 at 524.654 kb on + strand, within PfGW456L13_458 at 524.655 kb on - strand, within PfGW456L13_458 at 524.655 kb on - strand, within PfGW456L13_458 at 524.655 kb on - strand, within PfGW456L13_458 at 524.734 kb on + strand, within PfGW456L13_458
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 519,838 + -2.1 519,838 + +0.6 519,838 + -0.5 519,838 + +1.7 519,839 - +0.5 519,839 - -0.4 519,882 - -1.5 520,014 + -2.5 520,014 + -0.2 520,014 + +0.0 520,015 - +0.0 520,015 - +0.1 520,015 - +1.4 520,015 - +0.4 520,015 - -0.6 520,015 - -1.2 520,015 - -0.0 520,016 + -0.0 520,017 - -0.1 520,105 + +1.5 520,105 + -1.4 520,105 + -0.7 520,106 - -0.3 520,106 - -0.7 520,106 - +1.3 520,260 + PfGW456L13_456 0.33 +0.3 520,261 - PfGW456L13_456 0.33 -1.1 520,547 - PfGW456L13_456 0.79 -1.1 520,547 - PfGW456L13_456 0.79 -0.0 520,547 - PfGW456L13_456 0.79 -1.0 520,609 + PfGW456L13_456 0.89 -1.9 520,609 + PfGW456L13_456 0.89 -0.7 520,609 + PfGW456L13_456 0.89 -0.5 520,610 - PfGW456L13_456 0.89 -1.5 520,613 - PfGW456L13_456 0.89 -0.5 520,613 - PfGW456L13_456 0.89 -0.7 520,668 + -0.2 520,669 - +0.2 520,678 + +0.9 520,814 + +1.0 520,815 - +0.5 520,826 + +1.3 520,826 + -1.2 520,826 + -0.1 520,826 + -0.3 520,827 - -0.1 520,827 - -0.7 520,827 - +0.7 520,827 - +1.7 521,030 + +0.9 521,031 - +0.6 521,076 + +0.1 521,077 - +0.9 521,302 - PfGW456L13_457 0.17 -0.8 521,302 - PfGW456L13_457 0.17 -0.8 521,322 - PfGW456L13_457 0.18 +0.7 521,472 - PfGW456L13_457 0.23 -2.1 521,597 + PfGW456L13_457 0.27 +0.7 521,597 + PfGW456L13_457 0.27 -1.5 521,597 + PfGW456L13_457 0.27 +1.1 521,597 + PfGW456L13_457 0.27 +1.7 521,744 + PfGW456L13_457 0.32 -0.1 521,745 - PfGW456L13_457 0.32 +0.4 521,745 - PfGW456L13_457 0.32 -0.8 521,745 - PfGW456L13_457 0.32 +0.5 521,745 - PfGW456L13_457 0.32 -0.2 521,888 + PfGW456L13_457 0.36 +0.3 521,888 + PfGW456L13_457 0.36 -0.6 521,889 - PfGW456L13_457 0.36 -2.2 521,889 - PfGW456L13_457 0.36 +0.1 521,889 - PfGW456L13_457 0.36 +0.3 521,889 - PfGW456L13_457 0.36 +0.8 521,889 - PfGW456L13_457 0.36 +0.2 521,889 - PfGW456L13_457 0.36 -0.5 522,023 + PfGW456L13_457 0.41 +0.3 522,023 + PfGW456L13_457 0.41 -0.3 522,023 + PfGW456L13_457 0.41 -0.0 522,023 + PfGW456L13_457 0.41 -1.3 522,023 + PfGW456L13_457 0.41 -0.5 522,024 - PfGW456L13_457 0.41 -0.6 522,050 + PfGW456L13_457 0.42 +1.3 522,050 + PfGW456L13_457 0.42 -0.3 522,050 + PfGW456L13_457 0.42 -0.2 522,050 + PfGW456L13_457 0.42 -0.3 522,050 + PfGW456L13_457 0.42 -1.5 522,050 + PfGW456L13_457 0.42 +0.4 522,050 + PfGW456L13_457 0.42 -0.7 522,050 + PfGW456L13_457 0.42 +0.0 522,051 - PfGW456L13_457 0.42 +0.1 522,051 - PfGW456L13_457 0.42 +1.8 522,051 - PfGW456L13_457 0.42 -0.4 522,051 - PfGW456L13_457 0.42 -1.2 522,051 - PfGW456L13_457 0.42 -0.2 522,051 - PfGW456L13_457 0.42 -0.5 522,051 - PfGW456L13_457 0.42 -0.0 522,051 - PfGW456L13_457 0.42 +0.2 522,207 - PfGW456L13_457 0.47 -0.1 522,207 - PfGW456L13_457 0.47 -1.4 522,207 - PfGW456L13_457 0.47 +0.1 522,207 - PfGW456L13_457 0.47 +0.8 522,241 + PfGW456L13_457 0.48 -0.7 522,242 - PfGW456L13_457 0.48 +0.2 522,385 + PfGW456L13_457 0.53 +0.2 522,440 + PfGW456L13_457 0.54 +0.6 522,440 + PfGW456L13_457 0.54 +0.1 522,440 + PfGW456L13_457 0.54 +0.9 522,440 + PfGW456L13_457 0.54 +1.2 522,440 + PfGW456L13_457 0.54 +0.9 522,440 + PfGW456L13_457 0.54 -1.5 522,440 + PfGW456L13_457 0.54 -1.2 522,440 + PfGW456L13_457 0.54 +1.8 522,441 - PfGW456L13_457 0.54 -0.1 522,441 - PfGW456L13_457 0.54 -1.1 522,441 - PfGW456L13_457 0.54 -0.1 522,441 - PfGW456L13_457 0.54 -0.8 522,441 - PfGW456L13_457 0.54 +1.1 522,441 - PfGW456L13_457 0.54 +0.4 522,441 - PfGW456L13_457 0.54 +0.8 522,446 + PfGW456L13_457 0.55 +0.8 522,446 + PfGW456L13_457 0.55 +1.8 522,446 + PfGW456L13_457 0.55 -0.2 522,447 - PfGW456L13_457 0.55 -1.9 522,447 - PfGW456L13_457 0.55 +0.1 522,447 - PfGW456L13_457 0.55 -0.2 522,539 + PfGW456L13_457 0.58 -0.9 522,540 - PfGW456L13_457 0.58 -0.3 522,588 + PfGW456L13_457 0.59 +0.4 522,588 + PfGW456L13_457 0.59 +0.6 522,588 + PfGW456L13_457 0.59 +0.2 522,686 + PfGW456L13_457 0.62 -0.2 522,686 + PfGW456L13_457 0.62 +0.7 522,784 + PfGW456L13_457 0.66 +0.9 522,784 + PfGW456L13_457 0.66 -0.1 522,784 + PfGW456L13_457 0.66 +0.8 522,784 + PfGW456L13_457 0.66 -1.0 522,785 - PfGW456L13_457 0.66 +0.5 522,785 - PfGW456L13_457 0.66 -0.3 522,909 + PfGW456L13_457 0.70 -0.6 523,025 + PfGW456L13_457 0.74 -0.0 523,026 - PfGW456L13_457 0.74 -0.5 523,061 + PfGW456L13_457 0.75 +0.5 523,061 + PfGW456L13_457 0.75 +1.1 523,061 + PfGW456L13_457 0.75 -0.2 523,062 - PfGW456L13_457 0.75 +0.3 523,062 - PfGW456L13_457 0.75 -0.2 523,062 - PfGW456L13_457 0.75 +0.3 523,062 - PfGW456L13_457 0.75 +0.1 523,062 - PfGW456L13_457 0.75 +0.2 523,062 - PfGW456L13_457 0.75 -1.7 523,262 + PfGW456L13_457 0.81 +0.3 523,263 - PfGW456L13_457 0.81 +0.4 523,347 - PfGW456L13_457 0.84 +0.7 523,391 + PfGW456L13_457 0.86 +0.8 523,391 + PfGW456L13_457 0.86 +0.0 523,391 + PfGW456L13_457 0.86 +0.2 523,391 + PfGW456L13_457 0.86 -0.7 523,441 + PfGW456L13_457 0.87 +1.0 523,442 - PfGW456L13_457 0.87 -0.8 523,442 - PfGW456L13_457 0.87 +1.0 523,442 - PfGW456L13_457 0.87 +0.7 523,442 - PfGW456L13_457 0.87 +0.0 523,442 - PfGW456L13_457 0.87 +0.4 523,460 + PfGW456L13_457 0.88 -0.1 523,460 + PfGW456L13_457 0.88 -0.7 523,461 - PfGW456L13_457 0.88 -0.1 523,461 - PfGW456L13_457 0.88 +0.0 523,493 + PfGW456L13_457 0.89 -0.0 523,494 - PfGW456L13_457 0.89 +0.1 523,544 + -0.2 523,544 + +0.4 523,544 + -0.1 523,544 + +0.3 523,544 + +0.5 523,544 + +0.2 523,545 - -0.1 523,545 - +0.4 523,545 - +1.7 523,545 - +0.1 523,545 - +0.8 523,545 - -0.3 523,571 + +0.1 523,572 - +0.2 523,583 + -0.8 523,583 + +0.5 523,583 + +1.2 523,583 + +0.5 523,583 + +0.1 523,583 + +0.5 523,583 + -0.1 523,583 + +0.2 523,583 + +0.3 523,584 - -0.7 523,584 - -0.0 523,584 - -0.4 523,733 + -0.4 523,734 - +2.0 523,982 + PfGW456L13_458 0.15 -0.7 523,982 + PfGW456L13_458 0.15 +0.1 524,384 + PfGW456L13_458 0.52 -0.7 524,385 - PfGW456L13_458 0.52 -0.3 524,407 + PfGW456L13_458 0.54 +0.1 524,408 - PfGW456L13_458 0.55 +1.4 524,408 - PfGW456L13_458 0.55 +0.3 524,654 + PfGW456L13_458 0.78 -0.5 524,655 - PfGW456L13_458 0.78 -3.2 524,655 - PfGW456L13_458 0.78 +0.9 524,655 - PfGW456L13_458 0.78 +0.7 524,734 + PfGW456L13_458 0.85 +0.2
Or see this region's nucleotide sequence