Strain Fitness in Pseudomonas sp. RS175 around PFR28_00841

Experiment: D-(+)-Galactosamine (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_00840 and PFR28_00841 are separated by 198 nucleotidesPFR28_00841 and PFR28_00842 are separated by 9 nucleotides PFR28_00840: PFR28_00840 - hypothetical protein, at 913,361 to 914,734 _00840 PFR28_00841: PFR28_00841 - hypothetical protein, at 914,933 to 915,436 _00841 PFR28_00842: PFR28_00842 - Flagellar motor switch protein FliM, at 915,446 to 916,414 _00842 Position (kb) 914 915 916Strain fitness (log2 ratio) -1 0 1 2 3 4at 914.074 kb on + strand, within PFR28_00840at 914.074 kb on + strand, within PFR28_00840at 914.074 kb on + strand, within PFR28_00840at 914.074 kb on + strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.333 kb on + strand, within PFR28_00840at 914.334 kb on - strand, within PFR28_00840at 914.334 kb on - strand, within PFR28_00840at 914.334 kb on - strand, within PFR28_00840at 914.334 kb on - strand, within PFR28_00840at 914.334 kb on - strand, within PFR28_00840at 914.334 kb on - strand, within PFR28_00840at 914.334 kb on - strand, within PFR28_00840at 914.334 kb on - strand, within PFR28_00840at 914.334 kb on - strand, within PFR28_00840at 914.440 kb on + strand, within PFR28_00840at 914.440 kb on + strand, within PFR28_00840at 914.440 kb on + strand, within PFR28_00840at 914.441 kb on - strand, within PFR28_00840at 914.707 kb on + strandat 914.723 kb on + strandat 914.723 kb on + strandat 914.723 kb on + strandat 914.724 kb on - strandat 914.724 kb on - strandat 914.726 kb on + strandat 914.726 kb on + strandat 914.726 kb on + strandat 914.726 kb on + strandat 914.727 kb on - strandat 914.727 kb on - strandat 914.727 kb on - strandat 914.727 kb on - strandat 914.796 kb on - strandat 914.871 kb on + strandat 914.871 kb on + strandat 914.872 kb on - strandat 914.872 kb on - strandat 914.872 kb on - strandat 914.872 kb on - strandat 914.926 kb on + strandat 914.958 kb on + strandat 914.958 kb on + strandat 914.958 kb on + strandat 914.958 kb on + strandat 914.958 kb on + strandat 914.959 kb on - strandat 914.959 kb on - strandat 914.959 kb on - strandat 914.959 kb on - strandat 915.033 kb on + strand, within PFR28_00841at 915.034 kb on - strand, within PFR28_00841at 915.034 kb on - strand, within PFR28_00841at 915.034 kb on - strand, within PFR28_00841at 915.034 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.054 kb on - strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.161 kb on + strand, within PFR28_00841at 915.162 kb on - strand, within PFR28_00841at 915.162 kb on - strand, within PFR28_00841at 915.162 kb on - strand, within PFR28_00841at 915.162 kb on - strand, within PFR28_00841at 915.162 kb on - strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.185 kb on + strand, within PFR28_00841at 915.186 kb on - strand, within PFR28_00841at 915.186 kb on - strand, within PFR28_00841at 915.419 kb on - strandat 915.434 kb on + strandat 915.434 kb on + strandat 915.434 kb on + strandat 915.435 kb on - strandat 915.435 kb on - strandat 915.557 kb on + strand, within PFR28_00842at 915.557 kb on + strand, within PFR28_00842at 915.558 kb on - strand, within PFR28_00842at 915.558 kb on - strand, within PFR28_00842at 915.644 kb on - strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.719 kb on + strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.720 kb on - strand, within PFR28_00842at 915.734 kb on + strand, within PFR28_00842at 915.734 kb on + strand, within PFR28_00842at 915.734 kb on + strand, within PFR28_00842at 915.735 kb on - strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.907 kb on + strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.908 kb on - strand, within PFR28_00842at 915.977 kb on + strand, within PFR28_00842at 915.977 kb on + strand, within PFR28_00842at 915.977 kb on + strand, within PFR28_00842at 915.977 kb on + strand, within PFR28_00842at 915.978 kb on - strand, within PFR28_00842at 916.101 kb on - strand, within PFR28_00842

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-(+)-Galactosamine (C) 10 mM
remove
914,074 + PFR28_00840 0.52 +4.1
914,074 + PFR28_00840 0.52 +3.1
914,074 + PFR28_00840 0.52 +3.2
914,074 + PFR28_00840 0.52 +3.9
914,075 - PFR28_00840 0.52 +2.9
914,075 - PFR28_00840 0.52 +2.2
914,075 - PFR28_00840 0.52 +3.0
914,075 - PFR28_00840 0.52 +2.5
914,075 - PFR28_00840 0.52 +2.7
914,075 - PFR28_00840 0.52 +2.8
914,333 + PFR28_00840 0.71 +3.2
914,333 + PFR28_00840 0.71 +3.0
914,333 + PFR28_00840 0.71 +4.0
914,333 + PFR28_00840 0.71 +3.3
914,333 + PFR28_00840 0.71 +3.2
914,333 + PFR28_00840 0.71 +3.7
914,333 + PFR28_00840 0.71 +2.5
914,333 + PFR28_00840 0.71 +3.3
914,333 + PFR28_00840 0.71 +3.2
914,333 + PFR28_00840 0.71 +2.2
914,333 + PFR28_00840 0.71 +3.2
914,333 + PFR28_00840 0.71 +2.3
914,333 + PFR28_00840 0.71 +3.4
914,333 + PFR28_00840 0.71 +3.2
914,333 + PFR28_00840 0.71 +3.0
914,333 + PFR28_00840 0.71 +3.0
914,333 + PFR28_00840 0.71 +2.9
914,333 + PFR28_00840 0.71 +2.2
914,334 - PFR28_00840 0.71 +2.4
914,334 - PFR28_00840 0.71 +2.2
914,334 - PFR28_00840 0.71 +2.5
914,334 - PFR28_00840 0.71 +1.9
914,334 - PFR28_00840 0.71 +3.3
914,334 - PFR28_00840 0.71 +2.7
914,334 - PFR28_00840 0.71 +3.0
914,334 - PFR28_00840 0.71 +2.6
914,334 - PFR28_00840 0.71 +2.2
914,440 + PFR28_00840 0.79 +2.7
914,440 + PFR28_00840 0.79 +3.3
914,440 + PFR28_00840 0.79 +3.0
914,441 - PFR28_00840 0.79 +2.7
914,707 + +3.5
914,723 + +3.5
914,723 + +3.5
914,723 + +2.5
914,724 - +2.5
914,724 - +1.9
914,726 + +1.6
914,726 + +3.5
914,726 + +3.1
914,726 + +3.7
914,727 - +2.8
914,727 - +3.2
914,727 - +2.6
914,727 - +3.3
914,796 - -0.7
914,871 + +1.1
914,871 + +0.7
914,872 - +2.5
914,872 - +2.4
914,872 - +2.8
914,872 - +1.3
914,926 + -0.5
914,958 + +0.5
914,958 + +0.3
914,958 + -0.4
914,958 + +0.9
914,958 + +0.6
914,959 - +2.8
914,959 - +3.3
914,959 - +3.3
914,959 - +3.4
915,033 + PFR28_00841 0.20 -0.1
915,034 - PFR28_00841 0.20 +3.5
915,034 - PFR28_00841 0.20 +2.8
915,034 - PFR28_00841 0.20 +2.9
915,034 - PFR28_00841 0.20 +3.9
915,054 - PFR28_00841 0.24 +3.7
915,054 - PFR28_00841 0.24 +2.6
915,054 - PFR28_00841 0.24 +2.1
915,054 - PFR28_00841 0.24 +2.6
915,054 - PFR28_00841 0.24 +3.3
915,054 - PFR28_00841 0.24 +2.7
915,054 - PFR28_00841 0.24 +2.3
915,161 + PFR28_00841 0.45 -1.3
915,161 + PFR28_00841 0.45 +1.0
915,161 + PFR28_00841 0.45 +1.2
915,161 + PFR28_00841 0.45 +0.2
915,161 + PFR28_00841 0.45 +0.5
915,161 + PFR28_00841 0.45 -0.7
915,161 + PFR28_00841 0.45 -0.4
915,162 - PFR28_00841 0.45 +2.5
915,162 - PFR28_00841 0.45 +2.9
915,162 - PFR28_00841 0.45 +2.5
915,162 - PFR28_00841 0.45 +2.9
915,162 - PFR28_00841 0.45 +3.5
915,185 + PFR28_00841 0.50 -1.7
915,185 + PFR28_00841 0.50 +1.9
915,185 + PFR28_00841 0.50 +1.1
915,185 + PFR28_00841 0.50 -0.2
915,185 + PFR28_00841 0.50 +1.5
915,185 + PFR28_00841 0.50 +0.0
915,185 + PFR28_00841 0.50 +0.7
915,186 - PFR28_00841 0.50 +2.3
915,186 - PFR28_00841 0.50 +2.7
915,419 - +3.1
915,434 + +1.0
915,434 + -0.6
915,434 + +0.2
915,435 - +2.7
915,435 - +3.3
915,557 + PFR28_00842 0.11 +3.8
915,557 + PFR28_00842 0.11 +3.3
915,558 - PFR28_00842 0.12 +2.8
915,558 - PFR28_00842 0.12 +3.1
915,644 - PFR28_00842 0.20 +3.0
915,719 + PFR28_00842 0.28 +3.6
915,719 + PFR28_00842 0.28 +2.9
915,719 + PFR28_00842 0.28 +3.5
915,719 + PFR28_00842 0.28 +2.4
915,719 + PFR28_00842 0.28 +3.2
915,719 + PFR28_00842 0.28 +3.9
915,719 + PFR28_00842 0.28 +3.3
915,719 + PFR28_00842 0.28 +3.6
915,720 - PFR28_00842 0.28 +3.2
915,720 - PFR28_00842 0.28 +3.2
915,720 - PFR28_00842 0.28 +2.9
915,720 - PFR28_00842 0.28 +2.6
915,720 - PFR28_00842 0.28 +2.6
915,720 - PFR28_00842 0.28 +3.2
915,734 + PFR28_00842 0.30 +3.1
915,734 + PFR28_00842 0.30 +3.3
915,734 + PFR28_00842 0.30 +3.7
915,735 - PFR28_00842 0.30 +2.1
915,907 + PFR28_00842 0.48 +3.2
915,907 + PFR28_00842 0.48 +2.9
915,907 + PFR28_00842 0.48 +3.7
915,907 + PFR28_00842 0.48 +3.3
915,907 + PFR28_00842 0.48 +3.3
915,907 + PFR28_00842 0.48 +3.2
915,907 + PFR28_00842 0.48 +3.5
915,908 - PFR28_00842 0.48 -0.1
915,908 - PFR28_00842 0.48 +3.1
915,908 - PFR28_00842 0.48 +3.3
915,908 - PFR28_00842 0.48 +3.3
915,908 - PFR28_00842 0.48 +2.7
915,908 - PFR28_00842 0.48 +3.1
915,908 - PFR28_00842 0.48 +2.8
915,977 + PFR28_00842 0.55 +3.7
915,977 + PFR28_00842 0.55 +3.4
915,977 + PFR28_00842 0.55 +3.4
915,977 + PFR28_00842 0.55 +3.1
915,978 - PFR28_00842 0.55 +3.4
916,101 - PFR28_00842 0.68 +2.8

Or see this region's nucleotide sequence