Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0476

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0473 and Echvi_0474 are separated by 38 nucleotidesEchvi_0474 and Echvi_0475 are separated by 37 nucleotidesEchvi_0475 and Echvi_0476 are separated by 182 nucleotidesEchvi_0476 and Echvi_0477 overlap by 29 nucleotides Echvi_0473: Echvi_0473 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 520,723 to 521,754 _0473 Echvi_0474: Echvi_0474 - DoxX., at 521,793 to 522,173 _0474 Echvi_0475: Echvi_0475 - Uncharacterized protein conserved in bacteria, at 522,211 to 522,492 _0475 Echvi_0476: Echvi_0476 - Calcineurin-like phosphoesterase., at 522,675 to 523,334 _0476 Echvi_0477: Echvi_0477 - Exopolyphosphatase, at 523,306 to 524,853 _0477 Position (kb) 522 523 524Strain fitness (log2 ratio) -2 -1 0 1 2at 521.792 kb on + strandat 521.828 kb on - strandat 521.839 kb on + strand, within Echvi_0474at 521.840 kb on - strand, within Echvi_0474at 521.874 kb on + strand, within Echvi_0474at 521.875 kb on - strand, within Echvi_0474at 521.882 kb on + strand, within Echvi_0474at 521.882 kb on + strand, within Echvi_0474at 521.883 kb on - strand, within Echvi_0474at 521.883 kb on - strand, within Echvi_0474at 521.948 kb on - strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.072 kb on + strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.073 kb on - strand, within Echvi_0474at 522.107 kb on - strand, within Echvi_0474at 522.107 kb on - strand, within Echvi_0474at 522.150 kb on + strandat 522.171 kb on + strandat 522.171 kb on + strandat 522.172 kb on - strandat 522.176 kb on + strandat 522.185 kb on - strandat 522.211 kb on - strandat 522.215 kb on - strandat 522.215 kb on - strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.225 kb on + strandat 522.226 kb on - strandat 522.226 kb on - strandat 522.229 kb on + strandat 522.230 kb on - strandat 522.285 kb on - strand, within Echvi_0475at 522.301 kb on + strand, within Echvi_0475at 522.362 kb on + strand, within Echvi_0475at 522.366 kb on + strand, within Echvi_0475at 522.407 kb on + strand, within Echvi_0475at 522.421 kb on + strand, within Echvi_0475at 522.421 kb on + strand, within Echvi_0475at 522.422 kb on - strand, within Echvi_0475at 522.422 kb on - strand, within Echvi_0475at 522.438 kb on + strand, within Echvi_0475at 522.506 kb on - strandat 522.517 kb on + strandat 522.517 kb on + strandat 522.522 kb on - strandat 522.576 kb on - strandat 522.595 kb on - strandat 522.613 kb on + strandat 522.626 kb on + strandat 522.641 kb on - strandat 522.712 kb on - strandat 522.799 kb on - strand, within Echvi_0476at 522.812 kb on - strand, within Echvi_0476at 522.923 kb on + strand, within Echvi_0476at 522.924 kb on - strand, within Echvi_0476at 522.948 kb on + strand, within Echvi_0476at 522.949 kb on - strand, within Echvi_0476at 523.222 kb on + strand, within Echvi_0476at 523.222 kb on + strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.307 kb on + strandat 523.421 kb on + strandat 523.502 kb on - strand, within Echvi_0477at 523.662 kb on + strand, within Echvi_0477at 523.662 kb on + strand, within Echvi_0477at 523.679 kb on + strand, within Echvi_0477at 523.714 kb on - strand, within Echvi_0477at 523.767 kb on - strand, within Echvi_0477at 523.767 kb on - strand, within Echvi_0477at 523.809 kb on + strand, within Echvi_0477at 523.854 kb on + strand, within Echvi_0477at 523.855 kb on - strand, within Echvi_0477at 523.855 kb on - strand, within Echvi_0477at 523.884 kb on + strand, within Echvi_0477at 523.892 kb on - strand, within Echvi_0477at 523.932 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.982 kb on - strand, within Echvi_0477at 523.982 kb on - strand, within Echvi_0477at 523.982 kb on - strand, within Echvi_0477at 524.059 kb on - strand, within Echvi_0477at 524.123 kb on - strand, within Echvi_0477at 524.162 kb on - strand, within Echvi_0477at 524.317 kb on - strand, within Echvi_0477at 524.333 kb on - strand, within Echvi_0477

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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521,792 + +0.2
521,828 - -0.1
521,839 + Echvi_0474 0.12 +0.6
521,840 - Echvi_0474 0.12 +2.4
521,874 + Echvi_0474 0.21 +1.0
521,875 - Echvi_0474 0.22 -0.4
521,882 + Echvi_0474 0.23 -1.6
521,882 + Echvi_0474 0.23 +0.5
521,883 - Echvi_0474 0.24 -0.4
521,883 - Echvi_0474 0.24 -0.6
521,948 - Echvi_0474 0.41 +0.0
522,072 + Echvi_0474 0.73 -1.6
522,072 + Echvi_0474 0.73 -1.0
522,072 + Echvi_0474 0.73 -0.9
522,072 + Echvi_0474 0.73 +0.8
522,072 + Echvi_0474 0.73 +0.2
522,072 + Echvi_0474 0.73 -0.6
522,073 - Echvi_0474 0.73 -0.1
522,073 - Echvi_0474 0.73 -2.2
522,073 - Echvi_0474 0.73 +0.4
522,073 - Echvi_0474 0.73 -0.4
522,073 - Echvi_0474 0.73 +1.0
522,073 - Echvi_0474 0.73 -1.0
522,107 - Echvi_0474 0.82 -0.0
522,107 - Echvi_0474 0.82 +1.2
522,150 + +0.4
522,171 + -2.1
522,171 + +0.5
522,172 - +1.0
522,176 + +0.5
522,185 - +0.8
522,211 - -1.4
522,215 - -0.9
522,215 - -1.6
522,219 + +1.0
522,219 + +0.0
522,225 + -0.1
522,226 - -0.2
522,226 - +1.4
522,229 + -1.5
522,230 - -0.8
522,285 - Echvi_0475 0.26 -1.3
522,301 + Echvi_0475 0.32 +0.6
522,362 + Echvi_0475 0.54 +0.4
522,366 + Echvi_0475 0.55 +1.0
522,407 + Echvi_0475 0.70 +0.7
522,421 + Echvi_0475 0.74 -0.4
522,421 + Echvi_0475 0.74 -0.9
522,422 - Echvi_0475 0.75 -0.6
522,422 - Echvi_0475 0.75 +0.4
522,438 + Echvi_0475 0.80 +0.1
522,506 - +0.4
522,517 + -0.7
522,517 + +0.2
522,522 - +0.2
522,576 - -0.1
522,595 - -0.7
522,613 + +0.6
522,626 + +1.4
522,641 - +1.2
522,712 - -0.0
522,799 - Echvi_0476 0.19 -1.4
522,812 - Echvi_0476 0.21 -0.9
522,923 + Echvi_0476 0.38 +0.2
522,924 - Echvi_0476 0.38 -1.3
522,948 + Echvi_0476 0.41 +1.3
522,949 - Echvi_0476 0.42 -1.5
523,222 + Echvi_0476 0.83 -0.6
523,222 + Echvi_0476 0.83 -0.7
523,223 - Echvi_0476 0.83 -2.0
523,223 - Echvi_0476 0.83 -0.4
523,223 - Echvi_0476 0.83 -0.5
523,223 - Echvi_0476 0.83 +0.0
523,307 + +0.7
523,421 + -1.1
523,502 - Echvi_0477 0.13 +0.7
523,662 + Echvi_0477 0.23 +1.3
523,662 + Echvi_0477 0.23 +1.6
523,679 + Echvi_0477 0.24 +0.7
523,714 - Echvi_0477 0.26 -0.6
523,767 - Echvi_0477 0.30 +0.2
523,767 - Echvi_0477 0.30 -0.8
523,809 + Echvi_0477 0.32 -0.3
523,854 + Echvi_0477 0.35 +1.1
523,855 - Echvi_0477 0.35 -0.0
523,855 - Echvi_0477 0.35 +0.1
523,884 + Echvi_0477 0.37 -0.1
523,892 - Echvi_0477 0.38 -1.6
523,932 + Echvi_0477 0.40 -1.3
523,981 + Echvi_0477 0.44 -0.2
523,981 + Echvi_0477 0.44 -2.4
523,981 + Echvi_0477 0.44 -1.2
523,981 + Echvi_0477 0.44 -1.6
523,981 + Echvi_0477 0.44 -0.1
523,981 + Echvi_0477 0.44 -0.4
523,982 - Echvi_0477 0.44 -1.0
523,982 - Echvi_0477 0.44 -0.0
523,982 - Echvi_0477 0.44 -0.4
524,059 - Echvi_0477 0.49 -0.3
524,123 - Echvi_0477 0.53 -0.9
524,162 - Echvi_0477 0.55 +0.3
524,317 - Echvi_0477 0.65 -2.3
524,333 - Echvi_0477 0.66 -1.0

Or see this region's nucleotide sequence