Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0405

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0404 and Echvi_0405 are separated by 87 nucleotidesEchvi_0405 and Echvi_0406 are separated by 177 nucleotides Echvi_0404: Echvi_0404 - hypothetical protein, at 437,347 to 440,667 _0404 Echvi_0405: Echvi_0405 - L-arabinose isomerase, at 440,755 to 442,245 _0405 Echvi_0406: Echvi_0406 - hypothetical protein, at 442,423 to 443,328 _0406 Position (kb) 440 441 442 443Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 439.803 kb on + strand, within Echvi_0404at 439.804 kb on - strand, within Echvi_0404at 439.804 kb on - strand, within Echvi_0404at 439.807 kb on + strand, within Echvi_0404at 439.807 kb on + strand, within Echvi_0404at 439.807 kb on + strand, within Echvi_0404at 439.840 kb on + strand, within Echvi_0404at 439.840 kb on + strand, within Echvi_0404at 439.840 kb on + strand, within Echvi_0404at 439.841 kb on - strand, within Echvi_0404at 439.841 kb on - strand, within Echvi_0404at 439.897 kb on + strand, within Echvi_0404at 439.897 kb on + strand, within Echvi_0404at 439.898 kb on - strand, within Echvi_0404at 439.899 kb on + strand, within Echvi_0404at 439.900 kb on - strand, within Echvi_0404at 440.016 kb on + strand, within Echvi_0404at 440.017 kb on - strand, within Echvi_0404at 440.140 kb on + strand, within Echvi_0404at 440.144 kb on + strand, within Echvi_0404at 440.145 kb on - strand, within Echvi_0404at 440.228 kb on + strand, within Echvi_0404at 440.228 kb on + strand, within Echvi_0404at 440.228 kb on + strand, within Echvi_0404at 440.229 kb on - strand, within Echvi_0404at 440.229 kb on - strand, within Echvi_0404at 440.229 kb on - strand, within Echvi_0404at 440.235 kb on - strand, within Echvi_0404at 440.235 kb on - strand, within Echvi_0404at 440.397 kb on + strandat 440.397 kb on + strandat 440.398 kb on - strandat 440.433 kb on - strandat 440.438 kb on - strandat 440.671 kb on + strandat 440.685 kb on + strandat 440.705 kb on - strandat 440.727 kb on + strandat 440.727 kb on + strandat 440.751 kb on + strandat 440.756 kb on + strandat 440.756 kb on + strandat 440.764 kb on + strandat 440.765 kb on - strandat 440.765 kb on - strandat 440.786 kb on + strandat 440.884 kb on + strandat 440.884 kb on + strandat 440.885 kb on - strandat 440.987 kb on + strand, within Echvi_0405at 440.987 kb on + strand, within Echvi_0405at 440.987 kb on + strand, within Echvi_0405at 441.013 kb on - strand, within Echvi_0405at 441.016 kb on - strand, within Echvi_0405at 441.072 kb on - strand, within Echvi_0405at 441.099 kb on + strand, within Echvi_0405at 441.099 kb on + strand, within Echvi_0405at 441.117 kb on + strand, within Echvi_0405at 441.117 kb on + strand, within Echvi_0405at 441.118 kb on - strand, within Echvi_0405at 441.121 kb on - strand, within Echvi_0405at 441.121 kb on - strand, within Echvi_0405at 441.311 kb on - strand, within Echvi_0405at 441.344 kb on + strand, within Echvi_0405at 441.351 kb on - strand, within Echvi_0405at 441.351 kb on - strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.631 kb on - strand, within Echvi_0405at 441.639 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.650 kb on - strand, within Echvi_0405at 441.650 kb on - strand, within Echvi_0405at 441.651 kb on + strand, within Echvi_0405at 441.652 kb on - strand, within Echvi_0405at 441.682 kb on + strand, within Echvi_0405at 441.682 kb on + strand, within Echvi_0405at 441.683 kb on - strand, within Echvi_0405at 441.831 kb on - strand, within Echvi_0405at 441.842 kb on + strand, within Echvi_0405at 441.843 kb on - strand, within Echvi_0405at 441.861 kb on - strand, within Echvi_0405at 441.874 kb on - strand, within Echvi_0405at 441.896 kb on - strand, within Echvi_0405at 441.901 kb on - strand, within Echvi_0405at 441.904 kb on + strand, within Echvi_0405at 441.904 kb on + strand, within Echvi_0405at 441.904 kb on + strand, within Echvi_0405at 441.904 kb on + strand, within Echvi_0405at 441.904 kb on + strand, within Echvi_0405at 441.951 kb on - strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.955 kb on - strand, within Echvi_0405at 441.955 kb on - strand, within Echvi_0405at 441.955 kb on - strand, within Echvi_0405at 441.955 kb on - strand, within Echvi_0405at 441.972 kb on + strand, within Echvi_0405at 441.972 kb on + strand, within Echvi_0405at 442.048 kb on + strand, within Echvi_0405at 442.053 kb on + strand, within Echvi_0405at 442.053 kb on + strand, within Echvi_0405at 442.053 kb on + strand, within Echvi_0405at 442.062 kb on + strand, within Echvi_0405at 442.087 kb on + strand, within Echvi_0405at 442.088 kb on - strand, within Echvi_0405at 442.139 kb on + strandat 442.140 kb on - strandat 442.148 kb on + strandat 442.304 kb on + strandat 442.319 kb on + strandat 442.320 kb on - strandat 442.320 kb on - strandat 442.323 kb on + strandat 442.324 kb on - strandat 442.328 kb on + strandat 442.403 kb on + strandat 442.403 kb on + strandat 442.403 kb on + strandat 442.404 kb on - strandat 442.408 kb on + strandat 442.410 kb on + strandat 442.410 kb on + strandat 442.411 kb on - strandat 442.411 kb on - strandat 442.411 kb on - strandat 442.413 kb on + strandat 442.414 kb on - strandat 442.424 kb on + strandat 442.425 kb on - strandat 442.467 kb on + strandat 442.467 kb on + strandat 442.468 kb on - strandat 442.468 kb on - strandat 442.477 kb on + strandat 442.477 kb on + strandat 442.477 kb on + strandat 442.478 kb on - strandat 442.478 kb on - strandat 442.478 kb on - strandat 442.485 kb on - strandat 442.511 kb on + strandat 442.511 kb on + strandat 442.511 kb on + strandat 442.512 kb on - strandat 442.512 kb on - strandat 442.512 kb on - strandat 442.525 kb on - strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.528 kb on - strand, within Echvi_0406at 442.528 kb on - strand, within Echvi_0406at 442.530 kb on - strand, within Echvi_0406at 442.531 kb on + strand, within Echvi_0406at 442.532 kb on - strand, within Echvi_0406at 442.564 kb on + strand, within Echvi_0406at 442.566 kb on + strand, within Echvi_0406at 442.566 kb on + strand, within Echvi_0406at 442.655 kb on + strand, within Echvi_0406at 442.673 kb on + strand, within Echvi_0406at 442.674 kb on - strand, within Echvi_0406at 442.728 kb on + strand, within Echvi_0406at 442.749 kb on + strand, within Echvi_0406at 442.795 kb on - strand, within Echvi_0406at 442.832 kb on - strand, within Echvi_0406at 442.840 kb on - strand, within Echvi_0406at 442.899 kb on - strand, within Echvi_0406at 442.930 kb on + strand, within Echvi_0406at 442.981 kb on - strand, within Echvi_0406at 443.055 kb on + strand, within Echvi_0406at 443.177 kb on + strand, within Echvi_0406at 443.184 kb on + strand, within Echvi_0406at 443.203 kb on - strand, within Echvi_0406at 443.214 kb on + strand, within Echvi_0406at 443.214 kb on + strand, within Echvi_0406at 443.214 kb on + strand, within Echvi_0406at 443.214 kb on + strand, within Echvi_0406at 443.214 kb on + strand, within Echvi_0406at 443.216 kb on + strand, within Echvi_0406at 443.216 kb on + strand, within Echvi_0406at 443.216 kb on + strand, within Echvi_0406at 443.217 kb on - strand, within Echvi_0406at 443.217 kb on - strand, within Echvi_0406at 443.217 kb on - strand, within Echvi_0406at 443.217 kb on - strand, within Echvi_0406at 443.220 kb on + strand, within Echvi_0406at 443.220 kb on + strand, within Echvi_0406at 443.221 kb on - strand, within Echvi_0406at 443.221 kb on - strand, within Echvi_0406at 443.221 kb on - strand, within Echvi_0406at 443.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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439,803 + Echvi_0404 0.74 -0.7
439,804 - Echvi_0404 0.74 +5.1
439,804 - Echvi_0404 0.74 +4.5
439,807 + Echvi_0404 0.74 +1.1
439,807 + Echvi_0404 0.74 +1.6
439,807 + Echvi_0404 0.74 +0.5
439,840 + Echvi_0404 0.75 +0.5
439,840 + Echvi_0404 0.75 -0.1
439,840 + Echvi_0404 0.75 +0.5
439,841 - Echvi_0404 0.75 +5.0
439,841 - Echvi_0404 0.75 +4.8
439,897 + Echvi_0404 0.77 +0.3
439,897 + Echvi_0404 0.77 +1.1
439,898 - Echvi_0404 0.77 +4.9
439,899 + Echvi_0404 0.77 -0.2
439,900 - Echvi_0404 0.77 +5.6
440,016 + Echvi_0404 0.80 +0.5
440,017 - Echvi_0404 0.80 +5.0
440,140 + Echvi_0404 0.84 +0.4
440,144 + Echvi_0404 0.84 +1.2
440,145 - Echvi_0404 0.84 +5.1
440,228 + Echvi_0404 0.87 -1.8
440,228 + Echvi_0404 0.87 -0.9
440,228 + Echvi_0404 0.87 +2.2
440,229 - Echvi_0404 0.87 +5.1
440,229 - Echvi_0404 0.87 +4.7
440,229 - Echvi_0404 0.87 +5.1
440,235 - Echvi_0404 0.87 +5.2
440,235 - Echvi_0404 0.87 +5.6
440,397 + -1.5
440,397 + -0.3
440,398 - +5.1
440,433 - +3.7
440,438 - +4.2
440,671 + -1.3
440,685 + -0.3
440,705 - +6.7
440,727 + +1.9
440,727 + +0.4
440,751 + +0.5
440,756 + -0.2
440,756 + +0.1
440,764 + +1.7
440,765 - +6.0
440,765 - +5.7
440,786 + -0.7
440,884 + -0.1
440,884 + +0.4
440,885 - +6.1
440,987 + Echvi_0405 0.16 -2.1
440,987 + Echvi_0405 0.16 +0.9
440,987 + Echvi_0405 0.16 +0.5
441,013 - Echvi_0405 0.17 +5.1
441,016 - Echvi_0405 0.18 +5.1
441,072 - Echvi_0405 0.21 +4.7
441,099 + Echvi_0405 0.23 -0.8
441,099 + Echvi_0405 0.23 +0.3
441,117 + Echvi_0405 0.24 -0.7
441,117 + Echvi_0405 0.24 +0.3
441,118 - Echvi_0405 0.24 +3.7
441,121 - Echvi_0405 0.25 +5.9
441,121 - Echvi_0405 0.25 +5.9
441,311 - Echvi_0405 0.37 +6.5
441,344 + Echvi_0405 0.40 +0.1
441,351 - Echvi_0405 0.40 +4.9
441,351 - Echvi_0405 0.40 +5.5
441,630 + Echvi_0405 0.59 +0.5
441,630 + Echvi_0405 0.59 +0.7
441,630 + Echvi_0405 0.59 +0.8
441,630 + Echvi_0405 0.59 -1.7
441,631 - Echvi_0405 0.59 +5.0
441,639 + Echvi_0405 0.59 -0.5
441,649 + Echvi_0405 0.60 -0.9
441,649 + Echvi_0405 0.60 +0.7
441,649 + Echvi_0405 0.60 +0.6
441,649 + Echvi_0405 0.60 +0.5
441,649 + Echvi_0405 0.60 +0.5
441,650 - Echvi_0405 0.60 +6.0
441,650 - Echvi_0405 0.60 +5.4
441,651 + Echvi_0405 0.60 +0.1
441,652 - Echvi_0405 0.60 +5.5
441,682 + Echvi_0405 0.62 +0.7
441,682 + Echvi_0405 0.62 +0.1
441,683 - Echvi_0405 0.62 +5.3
441,831 - Echvi_0405 0.72 +4.0
441,842 + Echvi_0405 0.73 -0.1
441,843 - Echvi_0405 0.73 +5.3
441,861 - Echvi_0405 0.74 +5.2
441,874 - Echvi_0405 0.75 +5.8
441,896 - Echvi_0405 0.77 +5.1
441,901 - Echvi_0405 0.77 +4.7
441,904 + Echvi_0405 0.77 +1.5
441,904 + Echvi_0405 0.77 -0.0
441,904 + Echvi_0405 0.77 +0.0
441,904 + Echvi_0405 0.77 +0.3
441,904 + Echvi_0405 0.77 -1.3
441,951 - Echvi_0405 0.80 +1.8
441,954 + Echvi_0405 0.80 +0.2
441,954 + Echvi_0405 0.80 +0.9
441,954 + Echvi_0405 0.80 +2.5
441,954 + Echvi_0405 0.80 +0.0
441,954 + Echvi_0405 0.80 -1.4
441,954 + Echvi_0405 0.80 +0.3
441,954 + Echvi_0405 0.80 -1.7
441,954 + Echvi_0405 0.80 +0.8
441,954 + Echvi_0405 0.80 -0.4
441,954 + Echvi_0405 0.80 +0.7
441,955 - Echvi_0405 0.80 +5.8
441,955 - Echvi_0405 0.80 +5.1
441,955 - Echvi_0405 0.80 +5.1
441,955 - Echvi_0405 0.80 +5.5
441,972 + Echvi_0405 0.82 +1.4
441,972 + Echvi_0405 0.82 +0.6
442,048 + Echvi_0405 0.87 +0.2
442,053 + Echvi_0405 0.87 +0.3
442,053 + Echvi_0405 0.87 -2.7
442,053 + Echvi_0405 0.87 +0.5
442,062 + Echvi_0405 0.88 -1.0
442,087 + Echvi_0405 0.89 +0.8
442,088 - Echvi_0405 0.89 +5.3
442,139 + +0.8
442,140 - +5.2
442,148 + +0.1
442,304 + +0.5
442,319 + -1.5
442,320 - +5.4
442,320 - +6.6
442,323 + +0.5
442,324 - +5.9
442,328 + -0.5
442,403 + -1.0
442,403 + -0.3
442,403 + -1.5
442,404 - +5.9
442,408 + +0.7
442,410 + -0.8
442,410 + -1.1
442,411 - +4.4
442,411 - +4.7
442,411 - +5.0
442,413 + +1.0
442,414 - +5.8
442,424 + +1.9
442,425 - +6.6
442,467 + +1.2
442,467 + -0.3
442,468 - +4.3
442,468 - +5.4
442,477 + -0.9
442,477 + -1.0
442,477 + +1.5
442,478 - +4.1
442,478 - +4.4
442,478 - +4.6
442,485 - +5.8
442,511 + +0.1
442,511 + -0.3
442,511 + -2.0
442,512 - +4.9
442,512 - +4.7
442,512 - +4.8
442,525 - Echvi_0406 0.11 +6.1
442,527 + Echvi_0406 0.11 -0.2
442,527 + Echvi_0406 0.11 -3.2
442,527 + Echvi_0406 0.11 -1.4
442,527 + Echvi_0406 0.11 -1.7
442,527 + Echvi_0406 0.11 -0.2
442,527 + Echvi_0406 0.11 +0.4
442,527 + Echvi_0406 0.11 +1.0
442,527 + Echvi_0406 0.11 +1.9
442,527 + Echvi_0406 0.11 -2.2
442,527 + Echvi_0406 0.11 +0.7
442,527 + Echvi_0406 0.11 +1.5
442,527 + Echvi_0406 0.11 -2.2
442,528 - Echvi_0406 0.12 +5.1
442,528 - Echvi_0406 0.12 +5.0
442,530 - Echvi_0406 0.12 +4.7
442,531 + Echvi_0406 0.12 +0.2
442,532 - Echvi_0406 0.12 +4.0
442,564 + Echvi_0406 0.16 +1.7
442,566 + Echvi_0406 0.16 -0.3
442,566 + Echvi_0406 0.16 +0.3
442,655 + Echvi_0406 0.26 -0.4
442,673 + Echvi_0406 0.28 -0.1
442,674 - Echvi_0406 0.28 +4.5
442,728 + Echvi_0406 0.34 +1.1
442,749 + Echvi_0406 0.36 +1.2
442,795 - Echvi_0406 0.41 +6.3
442,832 - Echvi_0406 0.45 +4.9
442,840 - Echvi_0406 0.46 +4.2
442,899 - Echvi_0406 0.53 +4.4
442,930 + Echvi_0406 0.56 -0.4
442,981 - Echvi_0406 0.62 -0.1
443,055 + Echvi_0406 0.70 -0.6
443,177 + Echvi_0406 0.83 +2.2
443,184 + Echvi_0406 0.84 +0.2
443,203 - Echvi_0406 0.86 +0.2
443,214 + Echvi_0406 0.87 -2.1
443,214 + Echvi_0406 0.87 +1.4
443,214 + Echvi_0406 0.87 -1.3
443,214 + Echvi_0406 0.87 +1.9
443,214 + Echvi_0406 0.87 -1.9
443,216 + Echvi_0406 0.88 +0.1
443,216 + Echvi_0406 0.88 -0.3
443,216 + Echvi_0406 0.88 -1.3
443,217 - Echvi_0406 0.88 +0.9
443,217 - Echvi_0406 0.88 +0.7
443,217 - Echvi_0406 0.88 +2.2
443,217 - Echvi_0406 0.88 +2.4
443,220 + Echvi_0406 0.88 +0.4
443,220 + Echvi_0406 0.88 +0.1
443,221 - Echvi_0406 0.88 +1.7
443,221 - Echvi_0406 0.88 +1.2
443,221 - Echvi_0406 0.88 +1.1
443,240 - +3.2

Or see this region's nucleotide sequence