Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0403 and Echvi_0404 are separated by 143 nucleotides Echvi_0404 and Echvi_0405 are separated by 87 nucleotides
Echvi_0403: Echvi_0403 - Endoglucanase, at 433,091 to 437,203
_0403
Echvi_0404: Echvi_0404 - hypothetical protein, at 437,347 to 440,667
_0404
Echvi_0405: Echvi_0405 - L-arabinose isomerase, at 440,755 to 442,245
_0405
Position (kb) 437
438
439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 436.369 kb on - strand, within Echvi_0403 at 436.507 kb on + strand, within Echvi_0403 at 436.535 kb on + strand, within Echvi_0403 at 436.535 kb on + strand, within Echvi_0403 at 436.559 kb on - strand, within Echvi_0403 at 436.598 kb on - strand, within Echvi_0403 at 436.600 kb on + strand, within Echvi_0403 at 436.601 kb on - strand, within Echvi_0403 at 436.601 kb on - strand, within Echvi_0403 at 436.604 kb on + strand, within Echvi_0403 at 436.604 kb on + strand, within Echvi_0403 at 436.604 kb on + strand, within Echvi_0403 at 436.605 kb on - strand, within Echvi_0403 at 436.605 kb on - strand, within Echvi_0403 at 436.605 kb on - strand, within Echvi_0403 at 436.605 kb on - strand, within Echvi_0403 at 436.620 kb on - strand, within Echvi_0403 at 436.635 kb on + strand, within Echvi_0403 at 436.695 kb on + strand, within Echvi_0403 at 436.695 kb on + strand, within Echvi_0403 at 436.696 kb on - strand, within Echvi_0403 at 436.696 kb on - strand, within Echvi_0403 at 436.732 kb on - strand, within Echvi_0403 at 436.809 kb on + strand at 437.006 kb on - strand at 437.035 kb on - strand at 437.151 kb on + strand at 437.151 kb on + strand at 437.183 kb on + strand at 437.184 kb on - strand at 437.203 kb on + strand at 437.204 kb on - strand at 437.204 kb on - strand at 437.204 kb on - strand at 437.204 kb on - strand at 437.208 kb on + strand at 437.209 kb on - strand at 437.233 kb on + strand at 437.236 kb on + strand at 437.236 kb on + strand at 437.284 kb on - strand at 437.308 kb on + strand at 437.308 kb on + strand at 437.312 kb on + strand at 437.317 kb on + strand at 437.317 kb on + strand at 437.361 kb on + strand at 437.393 kb on - strand at 437.400 kb on - strand at 437.451 kb on - strand at 437.552 kb on - strand at 437.569 kb on - strand at 437.609 kb on + strand at 437.648 kb on + strand at 437.724 kb on + strand, within Echvi_0404 at 437.727 kb on + strand, within Echvi_0404 at 437.739 kb on - strand, within Echvi_0404 at 437.744 kb on + strand, within Echvi_0404 at 437.744 kb on + strand, within Echvi_0404 at 437.744 kb on + strand, within Echvi_0404 at 437.802 kb on + strand, within Echvi_0404 at 437.882 kb on - strand, within Echvi_0404 at 437.882 kb on - strand, within Echvi_0404 at 437.882 kb on - strand, within Echvi_0404 at 437.935 kb on + strand, within Echvi_0404 at 437.935 kb on + strand, within Echvi_0404 at 437.935 kb on + strand, within Echvi_0404 at 437.940 kb on - strand, within Echvi_0404 at 437.940 kb on - strand, within Echvi_0404 at 437.972 kb on - strand, within Echvi_0404 at 438.001 kb on + strand, within Echvi_0404 at 438.143 kb on - strand, within Echvi_0404 at 438.143 kb on - strand, within Echvi_0404 at 438.184 kb on - strand, within Echvi_0404 at 438.204 kb on + strand, within Echvi_0404 at 438.210 kb on + strand, within Echvi_0404 at 438.235 kb on - strand, within Echvi_0404 at 438.268 kb on - strand, within Echvi_0404 at 438.274 kb on + strand, within Echvi_0404 at 438.332 kb on - strand, within Echvi_0404 at 438.332 kb on - strand, within Echvi_0404 at 438.334 kb on - strand, within Echvi_0404 at 438.393 kb on - strand, within Echvi_0404 at 438.393 kb on - strand, within Echvi_0404 at 438.401 kb on + strand, within Echvi_0404 at 438.401 kb on + strand, within Echvi_0404 at 438.402 kb on - strand, within Echvi_0404 at 438.404 kb on - strand, within Echvi_0404 at 438.468 kb on - strand, within Echvi_0404 at 438.561 kb on - strand, within Echvi_0404 at 438.672 kb on + strand, within Echvi_0404 at 438.818 kb on + strand, within Echvi_0404 at 438.822 kb on + strand, within Echvi_0404 at 438.823 kb on - strand, within Echvi_0404 at 438.827 kb on - strand, within Echvi_0404 at 438.861 kb on + strand, within Echvi_0404 at 438.899 kb on + strand, within Echvi_0404 at 438.983 kb on + strand, within Echvi_0404 at 438.985 kb on + strand, within Echvi_0404 at 438.985 kb on + strand, within Echvi_0404 at 438.998 kb on + strand, within Echvi_0404 at 439.133 kb on + strand, within Echvi_0404 at 439.133 kb on + strand, within Echvi_0404 at 439.134 kb on - strand, within Echvi_0404 at 439.134 kb on - strand, within Echvi_0404 at 439.157 kb on - strand, within Echvi_0404 at 439.209 kb on + strand, within Echvi_0404 at 439.314 kb on + strand, within Echvi_0404 at 439.317 kb on + strand, within Echvi_0404 at 439.401 kb on + strand, within Echvi_0404 at 439.422 kb on + strand, within Echvi_0404 at 439.433 kb on + strand, within Echvi_0404 at 439.594 kb on + strand, within Echvi_0404 at 439.603 kb on + strand, within Echvi_0404 at 439.652 kb on + strand, within Echvi_0404 at 439.700 kb on + strand, within Echvi_0404 at 439.700 kb on + strand, within Echvi_0404 at 439.803 kb on + strand, within Echvi_0404 at 439.804 kb on - strand, within Echvi_0404 at 439.804 kb on - strand, within Echvi_0404 at 439.807 kb on + strand, within Echvi_0404 at 439.807 kb on + strand, within Echvi_0404 at 439.807 kb on + strand, within Echvi_0404 at 439.840 kb on + strand, within Echvi_0404 at 439.840 kb on + strand, within Echvi_0404 at 439.840 kb on + strand, within Echvi_0404 at 439.841 kb on - strand, within Echvi_0404 at 439.841 kb on - strand, within Echvi_0404 at 439.897 kb on + strand, within Echvi_0404 at 439.897 kb on + strand, within Echvi_0404 at 439.898 kb on - strand, within Echvi_0404 at 439.899 kb on + strand, within Echvi_0404 at 439.900 kb on - strand, within Echvi_0404 at 440.016 kb on + strand, within Echvi_0404 at 440.017 kb on - strand, within Echvi_0404 at 440.140 kb on + strand, within Echvi_0404 at 440.144 kb on + strand, within Echvi_0404 at 440.145 kb on - strand, within Echvi_0404 at 440.228 kb on + strand, within Echvi_0404 at 440.228 kb on + strand, within Echvi_0404 at 440.228 kb on + strand, within Echvi_0404 at 440.229 kb on - strand, within Echvi_0404 at 440.229 kb on - strand, within Echvi_0404 at 440.229 kb on - strand, within Echvi_0404 at 440.235 kb on - strand, within Echvi_0404 at 440.235 kb on - strand, within Echvi_0404 at 440.397 kb on + strand at 440.397 kb on + strand at 440.398 kb on - strand at 440.433 kb on - strand at 440.438 kb on - strand at 440.671 kb on + strand at 440.685 kb on + strand at 440.705 kb on - strand at 440.727 kb on + strand at 440.727 kb on + strand at 440.751 kb on + strand at 440.756 kb on + strand at 440.756 kb on + strand at 440.764 kb on + strand at 440.765 kb on - strand at 440.765 kb on - strand at 440.786 kb on + strand at 440.884 kb on + strand at 440.884 kb on + strand at 440.885 kb on - strand at 440.987 kb on + strand, within Echvi_0405 at 440.987 kb on + strand, within Echvi_0405 at 440.987 kb on + strand, within Echvi_0405 at 441.013 kb on - strand, within Echvi_0405 at 441.016 kb on - strand, within Echvi_0405 at 441.072 kb on - strand, within Echvi_0405 at 441.099 kb on + strand, within Echvi_0405 at 441.099 kb on + strand, within Echvi_0405 at 441.117 kb on + strand, within Echvi_0405 at 441.117 kb on + strand, within Echvi_0405 at 441.118 kb on - strand, within Echvi_0405 at 441.121 kb on - strand, within Echvi_0405 at 441.121 kb on - strand, within Echvi_0405 at 441.311 kb on - strand, within Echvi_0405 at 441.344 kb on + strand, within Echvi_0405 at 441.351 kb on - strand, within Echvi_0405 at 441.351 kb on - strand, within Echvi_0405 at 441.630 kb on + strand, within Echvi_0405 at 441.630 kb on + strand, within Echvi_0405 at 441.630 kb on + strand, within Echvi_0405 at 441.630 kb on + strand, within Echvi_0405 at 441.631 kb on - strand, within Echvi_0405 at 441.639 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.650 kb on - strand, within Echvi_0405 at 441.650 kb on - strand, within Echvi_0405 at 441.651 kb on + strand, within Echvi_0405 at 441.652 kb on - strand, within Echvi_0405
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 436,369 - Echvi_0403 0.80 +2.2 436,507 + Echvi_0403 0.83 +1.5 436,535 + Echvi_0403 0.84 -1.1 436,535 + Echvi_0403 0.84 +0.9 436,559 - Echvi_0403 0.84 +4.7 436,598 - Echvi_0403 0.85 +1.5 436,600 + Echvi_0403 0.85 -0.5 436,601 - Echvi_0403 0.85 +2.4 436,601 - Echvi_0403 0.85 +0.1 436,604 + Echvi_0403 0.85 +1.2 436,604 + Echvi_0403 0.85 +0.1 436,604 + Echvi_0403 0.85 -0.9 436,605 - Echvi_0403 0.85 +0.7 436,605 - Echvi_0403 0.85 +2.1 436,605 - Echvi_0403 0.85 +1.9 436,605 - Echvi_0403 0.85 +0.9 436,620 - Echvi_0403 0.86 +2.8 436,635 + Echvi_0403 0.86 +0.4 436,695 + Echvi_0403 0.88 -0.6 436,695 + Echvi_0403 0.88 -1.4 436,696 - Echvi_0403 0.88 +2.4 436,696 - Echvi_0403 0.88 +4.1 436,732 - Echvi_0403 0.89 +1.9 436,809 + +1.4 437,006 - +3.3 437,035 - +2.7 437,151 + -2.8 437,151 + -0.4 437,183 + -0.4 437,184 - +2.5 437,203 + -0.4 437,204 - +5.4 437,204 - +4.6 437,204 - +4.1 437,204 - +5.0 437,208 + -1.6 437,209 - +5.5 437,233 + +1.6 437,236 + +0.6 437,236 + +0.9 437,284 - +5.7 437,308 + +0.6 437,308 + +0.1 437,312 + -0.2 437,317 + +0.1 437,317 + -0.7 437,361 + +0.2 437,393 - +5.1 437,400 - +5.4 437,451 - +6.2 437,552 - +5.9 437,569 - +5.2 437,609 + -1.5 437,648 + +0.4 437,724 + Echvi_0404 0.11 -1.1 437,727 + Echvi_0404 0.11 -0.1 437,739 - Echvi_0404 0.12 +6.0 437,744 + Echvi_0404 0.12 -1.9 437,744 + Echvi_0404 0.12 -0.8 437,744 + Echvi_0404 0.12 -0.1 437,802 + Echvi_0404 0.14 -1.5 437,882 - Echvi_0404 0.16 +6.8 437,882 - Echvi_0404 0.16 +3.5 437,882 - Echvi_0404 0.16 +6.2 437,935 + Echvi_0404 0.18 -1.2 437,935 + Echvi_0404 0.18 -0.7 437,935 + Echvi_0404 0.18 -0.1 437,940 - Echvi_0404 0.18 +5.5 437,940 - Echvi_0404 0.18 +5.0 437,972 - Echvi_0404 0.19 +5.8 438,001 + Echvi_0404 0.20 +0.6 438,143 - Echvi_0404 0.24 +5.8 438,143 - Echvi_0404 0.24 +6.1 438,184 - Echvi_0404 0.25 +6.5 438,204 + Echvi_0404 0.26 -0.1 438,210 + Echvi_0404 0.26 -0.9 438,235 - Echvi_0404 0.27 +5.7 438,268 - Echvi_0404 0.28 +5.7 438,274 + Echvi_0404 0.28 -0.1 438,332 - Echvi_0404 0.30 +5.6 438,332 - Echvi_0404 0.30 +4.9 438,334 - Echvi_0404 0.30 +4.6 438,393 - Echvi_0404 0.31 +5.4 438,393 - Echvi_0404 0.31 +5.9 438,401 + Echvi_0404 0.32 +0.4 438,401 + Echvi_0404 0.32 +1.4 438,402 - Echvi_0404 0.32 +5.8 438,404 - Echvi_0404 0.32 +4.3 438,468 - Echvi_0404 0.34 +6.0 438,561 - Echvi_0404 0.37 +5.7 438,672 + Echvi_0404 0.40 +0.9 438,818 + Echvi_0404 0.44 +0.7 438,822 + Echvi_0404 0.44 +0.7 438,823 - Echvi_0404 0.44 +5.1 438,827 - Echvi_0404 0.45 +5.7 438,861 + Echvi_0404 0.46 +0.4 438,899 + Echvi_0404 0.47 -1.7 438,983 + Echvi_0404 0.49 -0.4 438,985 + Echvi_0404 0.49 +0.7 438,985 + Echvi_0404 0.49 +1.1 438,998 + Echvi_0404 0.50 -0.6 439,133 + Echvi_0404 0.54 +0.5 439,133 + Echvi_0404 0.54 -0.1 439,134 - Echvi_0404 0.54 +5.8 439,134 - Echvi_0404 0.54 +4.9 439,157 - Echvi_0404 0.55 +5.9 439,209 + Echvi_0404 0.56 +1.1 439,314 + Echvi_0404 0.59 -0.7 439,317 + Echvi_0404 0.59 +1.0 439,401 + Echvi_0404 0.62 +0.2 439,422 + Echvi_0404 0.62 +0.3 439,433 + Echvi_0404 0.63 +0.7 439,594 + Echvi_0404 0.68 +0.4 439,603 + Echvi_0404 0.68 +0.0 439,652 + Echvi_0404 0.69 +0.3 439,700 + Echvi_0404 0.71 -0.2 439,700 + Echvi_0404 0.71 -1.3 439,803 + Echvi_0404 0.74 -0.7 439,804 - Echvi_0404 0.74 +5.1 439,804 - Echvi_0404 0.74 +4.5 439,807 + Echvi_0404 0.74 +1.1 439,807 + Echvi_0404 0.74 +1.6 439,807 + Echvi_0404 0.74 +0.5 439,840 + Echvi_0404 0.75 +0.5 439,840 + Echvi_0404 0.75 -0.1 439,840 + Echvi_0404 0.75 +0.5 439,841 - Echvi_0404 0.75 +5.0 439,841 - Echvi_0404 0.75 +4.8 439,897 + Echvi_0404 0.77 +0.3 439,897 + Echvi_0404 0.77 +1.1 439,898 - Echvi_0404 0.77 +4.9 439,899 + Echvi_0404 0.77 -0.2 439,900 - Echvi_0404 0.77 +5.6 440,016 + Echvi_0404 0.80 +0.5 440,017 - Echvi_0404 0.80 +5.0 440,140 + Echvi_0404 0.84 +0.4 440,144 + Echvi_0404 0.84 +1.2 440,145 - Echvi_0404 0.84 +5.1 440,228 + Echvi_0404 0.87 -1.8 440,228 + Echvi_0404 0.87 -0.9 440,228 + Echvi_0404 0.87 +2.2 440,229 - Echvi_0404 0.87 +5.1 440,229 - Echvi_0404 0.87 +4.7 440,229 - Echvi_0404 0.87 +5.1 440,235 - Echvi_0404 0.87 +5.2 440,235 - Echvi_0404 0.87 +5.6 440,397 + -1.5 440,397 + -0.3 440,398 - +5.1 440,433 - +3.7 440,438 - +4.2 440,671 + -1.3 440,685 + -0.3 440,705 - +6.7 440,727 + +1.9 440,727 + +0.4 440,751 + +0.5 440,756 + -0.2 440,756 + +0.1 440,764 + +1.7 440,765 - +6.0 440,765 - +5.7 440,786 + -0.7 440,884 + -0.1 440,884 + +0.4 440,885 - +6.1 440,987 + Echvi_0405 0.16 -2.1 440,987 + Echvi_0405 0.16 +0.9 440,987 + Echvi_0405 0.16 +0.5 441,013 - Echvi_0405 0.17 +5.1 441,016 - Echvi_0405 0.18 +5.1 441,072 - Echvi_0405 0.21 +4.7 441,099 + Echvi_0405 0.23 -0.8 441,099 + Echvi_0405 0.23 +0.3 441,117 + Echvi_0405 0.24 -0.7 441,117 + Echvi_0405 0.24 +0.3 441,118 - Echvi_0405 0.24 +3.7 441,121 - Echvi_0405 0.25 +5.9 441,121 - Echvi_0405 0.25 +5.9 441,311 - Echvi_0405 0.37 +6.5 441,344 + Echvi_0405 0.40 +0.1 441,351 - Echvi_0405 0.40 +4.9 441,351 - Echvi_0405 0.40 +5.5 441,630 + Echvi_0405 0.59 +0.5 441,630 + Echvi_0405 0.59 +0.7 441,630 + Echvi_0405 0.59 +0.8 441,630 + Echvi_0405 0.59 -1.7 441,631 - Echvi_0405 0.59 +5.0 441,639 + Echvi_0405 0.59 -0.5 441,649 + Echvi_0405 0.60 -0.9 441,649 + Echvi_0405 0.60 +0.7 441,649 + Echvi_0405 0.60 +0.6 441,649 + Echvi_0405 0.60 +0.5 441,649 + Echvi_0405 0.60 +0.5 441,650 - Echvi_0405 0.60 +6.0 441,650 - Echvi_0405 0.60 +5.4 441,651 + Echvi_0405 0.60 +0.1 441,652 - Echvi_0405 0.60 +5.5
Or see this region's nucleotide sequence