Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0401 and Echvi_0402 are separated by 18 nucleotides Echvi_0402 and Echvi_0403 are separated by 4 nucleotides
Echvi_0401: Echvi_0401 - SusD family., at 428,473 to 429,894
_0401
Echvi_0402: Echvi_0402 - TonB-linked outer membrane protein, SusC/RagA family, at 429,913 to 433,086
_0402
Echvi_0403: Echvi_0403 - Endoglucanase, at 433,091 to 437,203
_0403
Position (kb) 429
430
431
432
433
434 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 428.972 kb on + strand, within Echvi_0401 at 429.054 kb on + strand, within Echvi_0401 at 429.068 kb on + strand, within Echvi_0401 at 429.166 kb on + strand, within Echvi_0401 at 429.166 kb on + strand, within Echvi_0401 at 429.176 kb on + strand, within Echvi_0401 at 429.177 kb on - strand, within Echvi_0401 at 429.177 kb on - strand, within Echvi_0401 at 429.243 kb on - strand, within Echvi_0401 at 429.285 kb on - strand, within Echvi_0401 at 429.396 kb on - strand, within Echvi_0401 at 429.537 kb on + strand, within Echvi_0401 at 429.537 kb on + strand, within Echvi_0401 at 429.709 kb on - strand, within Echvi_0401 at 429.711 kb on - strand, within Echvi_0401 at 429.711 kb on - strand, within Echvi_0401 at 429.726 kb on + strand, within Echvi_0401 at 429.726 kb on + strand, within Echvi_0401 at 429.726 kb on + strand, within Echvi_0401 at 429.728 kb on + strand, within Echvi_0401 at 429.749 kb on + strand, within Echvi_0401 at 429.749 kb on + strand, within Echvi_0401 at 429.750 kb on - strand, within Echvi_0401 at 429.794 kb on + strand at 429.794 kb on + strand at 429.874 kb on + strand at 429.875 kb on - strand at 429.880 kb on + strand at 429.881 kb on - strand at 429.884 kb on + strand at 429.885 kb on - strand at 429.904 kb on - strand at 429.960 kb on - strand at 429.969 kb on - strand at 430.031 kb on + strand at 430.044 kb on + strand at 430.044 kb on + strand at 430.046 kb on + strand at 430.046 kb on + strand at 430.046 kb on + strand at 430.046 kb on + strand at 430.047 kb on - strand at 430.059 kb on + strand at 430.119 kb on + strand at 430.119 kb on + strand at 430.132 kb on - strand at 430.151 kb on + strand at 430.170 kb on - strand at 430.328 kb on + strand, within Echvi_0402 at 430.410 kb on + strand, within Echvi_0402 at 430.410 kb on + strand, within Echvi_0402 at 430.555 kb on + strand, within Echvi_0402 at 430.563 kb on + strand, within Echvi_0402 at 430.563 kb on + strand, within Echvi_0402 at 430.577 kb on + strand, within Echvi_0402 at 430.600 kb on + strand, within Echvi_0402 at 430.600 kb on + strand, within Echvi_0402 at 430.600 kb on + strand, within Echvi_0402 at 430.601 kb on - strand, within Echvi_0402 at 430.601 kb on - strand, within Echvi_0402 at 430.641 kb on + strand, within Echvi_0402 at 430.665 kb on + strand, within Echvi_0402 at 430.666 kb on - strand, within Echvi_0402 at 430.676 kb on - strand, within Echvi_0402 at 430.995 kb on - strand, within Echvi_0402 at 431.043 kb on + strand, within Echvi_0402 at 431.106 kb on + strand, within Echvi_0402 at 431.155 kb on - strand, within Echvi_0402 at 431.231 kb on + strand, within Echvi_0402 at 431.231 kb on + strand, within Echvi_0402 at 431.231 kb on + strand, within Echvi_0402 at 431.231 kb on + strand, within Echvi_0402 at 431.232 kb on - strand, within Echvi_0402 at 431.232 kb on - strand, within Echvi_0402 at 431.232 kb on - strand, within Echvi_0402 at 431.235 kb on + strand, within Echvi_0402 at 431.235 kb on + strand, within Echvi_0402 at 431.237 kb on + strand, within Echvi_0402 at 431.237 kb on + strand, within Echvi_0402 at 431.237 kb on + strand, within Echvi_0402 at 431.238 kb on - strand, within Echvi_0402 at 431.238 kb on - strand, within Echvi_0402 at 431.242 kb on + strand, within Echvi_0402 at 431.242 kb on + strand, within Echvi_0402 at 431.242 kb on + strand, within Echvi_0402 at 431.282 kb on + strand, within Echvi_0402 at 431.283 kb on - strand, within Echvi_0402 at 431.299 kb on + strand, within Echvi_0402 at 431.300 kb on - strand, within Echvi_0402 at 431.319 kb on - strand, within Echvi_0402 at 431.360 kb on - strand, within Echvi_0402 at 431.443 kb on - strand, within Echvi_0402 at 431.553 kb on + strand, within Echvi_0402 at 431.554 kb on - strand, within Echvi_0402 at 431.564 kb on - strand, within Echvi_0402 at 431.567 kb on + strand, within Echvi_0402 at 431.567 kb on + strand, within Echvi_0402 at 431.567 kb on + strand, within Echvi_0402 at 431.568 kb on - strand, within Echvi_0402 at 431.568 kb on - strand, within Echvi_0402 at 431.589 kb on + strand, within Echvi_0402 at 431.590 kb on - strand, within Echvi_0402 at 431.590 kb on - strand, within Echvi_0402 at 431.624 kb on + strand, within Echvi_0402 at 431.635 kb on - strand, within Echvi_0402 at 431.638 kb on + strand, within Echvi_0402 at 431.639 kb on - strand, within Echvi_0402 at 431.639 kb on - strand, within Echvi_0402 at 431.665 kb on - strand, within Echvi_0402 at 431.730 kb on + strand, within Echvi_0402 at 431.745 kb on + strand, within Echvi_0402 at 431.750 kb on + strand, within Echvi_0402 at 431.832 kb on + strand, within Echvi_0402 at 431.854 kb on + strand, within Echvi_0402 at 431.856 kb on + strand, within Echvi_0402 at 431.857 kb on - strand, within Echvi_0402 at 431.858 kb on + strand, within Echvi_0402 at 431.888 kb on + strand, within Echvi_0402 at 431.937 kb on + strand, within Echvi_0402 at 431.937 kb on + strand, within Echvi_0402 at 431.975 kb on + strand, within Echvi_0402 at 431.975 kb on + strand, within Echvi_0402 at 431.975 kb on + strand, within Echvi_0402 at 431.975 kb on + strand, within Echvi_0402 at 431.975 kb on + strand, within Echvi_0402 at 431.978 kb on + strand, within Echvi_0402 at 431.978 kb on + strand, within Echvi_0402 at 431.979 kb on - strand, within Echvi_0402 at 431.994 kb on + strand, within Echvi_0402 at 431.994 kb on + strand, within Echvi_0402 at 432.017 kb on + strand, within Echvi_0402 at 432.046 kb on - strand, within Echvi_0402 at 432.068 kb on - strand, within Echvi_0402 at 432.103 kb on + strand, within Echvi_0402 at 432.125 kb on - strand, within Echvi_0402 at 432.125 kb on - strand, within Echvi_0402 at 432.214 kb on + strand, within Echvi_0402 at 432.228 kb on + strand, within Echvi_0402 at 432.235 kb on + strand, within Echvi_0402 at 432.304 kb on - strand, within Echvi_0402 at 432.306 kb on + strand, within Echvi_0402 at 432.339 kb on - strand, within Echvi_0402 at 432.398 kb on - strand, within Echvi_0402 at 432.398 kb on - strand, within Echvi_0402 at 432.398 kb on - strand, within Echvi_0402 at 432.399 kb on + strand, within Echvi_0402 at 432.399 kb on + strand, within Echvi_0402 at 432.399 kb on + strand, within Echvi_0402 at 432.415 kb on + strand at 432.415 kb on + strand, within Echvi_0402 at 432.415 kb on + strand, within Echvi_0402 at 432.528 kb on - strand, within Echvi_0402 at 432.581 kb on - strand at 432.667 kb on + strand, within Echvi_0402 at 432.673 kb on + strand, within Echvi_0402 at 432.700 kb on + strand, within Echvi_0402 at 432.701 kb on - strand, within Echvi_0402 at 432.711 kb on + strand, within Echvi_0402 at 432.768 kb on + strand, within Echvi_0402 at 432.768 kb on + strand, within Echvi_0402 at 432.842 kb on + strand at 432.967 kb on - strand at 432.994 kb on - strand at 433.068 kb on + strand at 433.075 kb on + strand at 433.086 kb on + strand at 433.092 kb on + strand at 433.097 kb on + strand at 433.177 kb on + strand at 433.184 kb on + strand at 433.216 kb on + strand at 433.255 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.273 kb on + strand at 433.438 kb on + strand at 433.439 kb on - strand at 433.439 kb on - strand at 433.439 kb on - strand at 433.445 kb on + strand at 433.445 kb on + strand at 433.445 kb on + strand at 433.451 kb on + strand at 433.459 kb on + strand at 433.510 kb on + strand, within Echvi_0403 at 433.510 kb on + strand, within Echvi_0403 at 433.511 kb on - strand, within Echvi_0403 at 433.513 kb on + strand, within Echvi_0403 at 433.558 kb on + strand, within Echvi_0403 at 433.558 kb on + strand, within Echvi_0403 at 433.560 kb on + strand, within Echvi_0403 at 433.560 kb on + strand, within Echvi_0403 at 433.567 kb on + strand, within Echvi_0403 at 433.567 kb on + strand, within Echvi_0403 at 433.567 kb on + strand, within Echvi_0403 at 433.568 kb on - strand, within Echvi_0403 at 433.568 kb on - strand, within Echvi_0403 at 433.569 kb on + strand, within Echvi_0403 at 433.569 kb on + strand, within Echvi_0403 at 433.570 kb on - strand, within Echvi_0403 at 433.625 kb on + strand, within Echvi_0403 at 433.681 kb on + strand, within Echvi_0403 at 433.692 kb on + strand, within Echvi_0403 at 433.692 kb on + strand, within Echvi_0403 at 433.752 kb on + strand, within Echvi_0403 at 433.804 kb on + strand, within Echvi_0403 at 433.806 kb on + strand, within Echvi_0403 at 433.829 kb on + strand, within Echvi_0403 at 433.829 kb on + strand, within Echvi_0403 at 433.830 kb on - strand, within Echvi_0403 at 433.867 kb on + strand, within Echvi_0403 at 433.869 kb on + strand, within Echvi_0403 at 433.869 kb on + strand, within Echvi_0403 at 433.869 kb on + strand, within Echvi_0403 at 433.869 kb on + strand, within Echvi_0403 at 433.870 kb on - strand, within Echvi_0403 at 433.870 kb on - strand, within Echvi_0403 at 433.931 kb on + strand, within Echvi_0403 at 433.975 kb on + strand at 433.982 kb on - strand, within Echvi_0403 at 434.028 kb on + strand, within Echvi_0403 at 434.035 kb on + strand, within Echvi_0403 at 434.036 kb on - strand, within Echvi_0403 at 434.037 kb on + strand, within Echvi_0403
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 428,972 + Echvi_0401 0.35 -1.9 429,054 + Echvi_0401 0.41 -0.2 429,068 + Echvi_0401 0.42 +0.8 429,166 + Echvi_0401 0.49 +0.7 429,166 + Echvi_0401 0.49 +0.8 429,176 + Echvi_0401 0.49 -0.7 429,177 - Echvi_0401 0.50 +6.0 429,177 - Echvi_0401 0.50 +5.4 429,243 - Echvi_0401 0.54 +5.8 429,285 - Echvi_0401 0.57 +5.8 429,396 - Echvi_0401 0.65 +5.5 429,537 + Echvi_0401 0.75 +0.4 429,537 + Echvi_0401 0.75 -0.7 429,709 - Echvi_0401 0.87 +5.6 429,711 - Echvi_0401 0.87 +7.0 429,711 - Echvi_0401 0.87 +5.4 429,726 + Echvi_0401 0.88 +1.0 429,726 + Echvi_0401 0.88 -1.2 429,726 + Echvi_0401 0.88 +1.2 429,728 + Echvi_0401 0.88 -1.1 429,749 + Echvi_0401 0.90 -0.2 429,749 + Echvi_0401 0.90 +0.0 429,750 - Echvi_0401 0.90 +5.6 429,794 + -0.1 429,794 + +0.1 429,874 + +0.1 429,875 - +6.2 429,880 + -0.6 429,881 - +5.7 429,884 + -0.3 429,885 - +5.3 429,904 - +5.3 429,960 - +5.7 429,969 - +5.3 430,031 + +0.2 430,044 + +0.5 430,044 + +0.6 430,046 + +0.6 430,046 + +1.2 430,046 + +4.2 430,046 + -0.2 430,047 - +6.0 430,059 + -1.3 430,119 + -0.0 430,119 + +1.1 430,132 - +5.2 430,151 + +0.2 430,170 - +5.0 430,328 + Echvi_0402 0.13 -0.4 430,410 + Echvi_0402 0.16 -0.1 430,410 + Echvi_0402 0.16 +0.7 430,555 + Echvi_0402 0.20 +1.4 430,563 + Echvi_0402 0.20 +0.1 430,563 + Echvi_0402 0.20 -0.4 430,577 + Echvi_0402 0.21 -1.7 430,600 + Echvi_0402 0.22 -0.5 430,600 + Echvi_0402 0.22 +0.4 430,600 + Echvi_0402 0.22 -0.4 430,601 - Echvi_0402 0.22 +5.3 430,601 - Echvi_0402 0.22 +4.1 430,641 + Echvi_0402 0.23 +1.1 430,665 + Echvi_0402 0.24 +0.9 430,666 - Echvi_0402 0.24 +5.6 430,676 - Echvi_0402 0.24 +5.3 430,995 - Echvi_0402 0.34 +3.1 431,043 + Echvi_0402 0.36 -1.2 431,106 + Echvi_0402 0.38 -1.0 431,155 - Echvi_0402 0.39 +5.6 431,231 + Echvi_0402 0.42 +1.4 431,231 + Echvi_0402 0.42 -0.7 431,231 + Echvi_0402 0.42 -0.7 431,231 + Echvi_0402 0.42 -1.1 431,232 - Echvi_0402 0.42 +5.1 431,232 - Echvi_0402 0.42 +5.3 431,232 - Echvi_0402 0.42 +5.4 431,235 + Echvi_0402 0.42 -1.9 431,235 + Echvi_0402 0.42 -1.9 431,237 + Echvi_0402 0.42 +0.3 431,237 + Echvi_0402 0.42 +0.9 431,237 + Echvi_0402 0.42 +0.4 431,238 - Echvi_0402 0.42 +4.1 431,238 - Echvi_0402 0.42 +4.8 431,242 + Echvi_0402 0.42 +0.9 431,242 + Echvi_0402 0.42 +2.3 431,242 + Echvi_0402 0.42 -1.6 431,282 + Echvi_0402 0.43 -0.0 431,283 - Echvi_0402 0.43 +5.3 431,299 + Echvi_0402 0.44 +0.0 431,300 - Echvi_0402 0.44 +4.2 431,319 - Echvi_0402 0.44 +6.5 431,360 - Echvi_0402 0.46 +5.4 431,443 - Echvi_0402 0.48 +5.3 431,553 + Echvi_0402 0.52 -0.2 431,554 - Echvi_0402 0.52 +5.5 431,564 - Echvi_0402 0.52 +4.7 431,567 + Echvi_0402 0.52 -1.7 431,567 + Echvi_0402 0.52 +0.2 431,567 + Echvi_0402 0.52 -0.4 431,568 - Echvi_0402 0.52 +4.8 431,568 - Echvi_0402 0.52 +5.5 431,589 + Echvi_0402 0.53 +0.0 431,590 - Echvi_0402 0.53 +4.6 431,590 - Echvi_0402 0.53 +3.5 431,624 + Echvi_0402 0.54 +0.1 431,635 - Echvi_0402 0.54 +4.4 431,638 + Echvi_0402 0.54 -0.4 431,639 - Echvi_0402 0.54 +5.0 431,639 - Echvi_0402 0.54 +4.2 431,665 - Echvi_0402 0.55 +4.4 431,730 + Echvi_0402 0.57 -0.4 431,745 + Echvi_0402 0.58 +0.9 431,750 + Echvi_0402 0.58 -2.0 431,832 + Echvi_0402 0.60 -0.7 431,854 + Echvi_0402 0.61 -2.5 431,856 + Echvi_0402 0.61 +0.9 431,857 - Echvi_0402 0.61 +3.9 431,858 + Echvi_0402 0.61 +0.1 431,888 + Echvi_0402 0.62 +1.0 431,937 + Echvi_0402 0.64 +0.8 431,937 + Echvi_0402 0.64 -0.4 431,975 + Echvi_0402 0.65 +1.4 431,975 + Echvi_0402 0.65 +1.1 431,975 + Echvi_0402 0.65 +0.1 431,975 + Echvi_0402 0.65 -0.2 431,975 + Echvi_0402 0.65 -0.7 431,978 + Echvi_0402 0.65 -1.4 431,978 + Echvi_0402 0.65 -0.2 431,979 - Echvi_0402 0.65 +4.6 431,994 + Echvi_0402 0.66 -0.3 431,994 + Echvi_0402 0.66 -1.5 432,017 + Echvi_0402 0.66 -0.3 432,046 - Echvi_0402 0.67 +3.2 432,068 - Echvi_0402 0.68 +4.4 432,103 + Echvi_0402 0.69 +0.6 432,125 - Echvi_0402 0.70 +3.7 432,125 - Echvi_0402 0.70 +4.1 432,214 + Echvi_0402 0.72 +1.0 432,228 + Echvi_0402 0.73 +0.0 432,235 + Echvi_0402 0.73 -1.4 432,304 - Echvi_0402 0.75 +3.0 432,306 + Echvi_0402 0.75 -1.0 432,339 - Echvi_0402 0.76 +3.7 432,398 - Echvi_0402 0.78 +4.1 432,398 - Echvi_0402 0.78 +4.5 432,398 - Echvi_0402 0.78 +3.9 432,399 + Echvi_0402 0.78 +1.2 432,399 + Echvi_0402 0.78 -1.2 432,399 + Echvi_0402 0.78 +0.3 432,415 + +0.3 432,415 + Echvi_0402 0.79 -0.4 432,415 + Echvi_0402 0.79 -0.5 432,528 - Echvi_0402 0.82 +6.9 432,581 - +4.8 432,667 + Echvi_0402 0.87 -0.9 432,673 + Echvi_0402 0.87 -0.5 432,700 + Echvi_0402 0.88 -0.0 432,701 - Echvi_0402 0.88 +5.6 432,711 + Echvi_0402 0.88 +0.3 432,768 + Echvi_0402 0.90 -1.2 432,768 + Echvi_0402 0.90 +0.4 432,842 + -0.3 432,967 - +5.4 432,994 - +5.1 433,068 + -0.3 433,075 + -0.4 433,086 + -0.0 433,092 + +1.7 433,097 + -1.7 433,177 + +0.9 433,184 + +1.1 433,216 + +0.3 433,255 + -0.7 433,273 + -0.2 433,273 + -1.0 433,273 + -1.0 433,438 + -0.0 433,439 - +4.9 433,439 - +6.1 433,439 - +4.9 433,445 + +0.9 433,445 + -0.5 433,445 + -0.1 433,451 + -0.4 433,459 + -1.0 433,510 + Echvi_0403 0.10 +1.9 433,510 + Echvi_0403 0.10 +0.2 433,511 - Echvi_0403 0.10 +5.3 433,513 + Echvi_0403 0.10 -0.7 433,558 + Echvi_0403 0.11 +0.6 433,558 + Echvi_0403 0.11 -0.1 433,560 + Echvi_0403 0.11 -2.1 433,560 + Echvi_0403 0.11 -1.4 433,567 + Echvi_0403 0.12 -1.5 433,567 + Echvi_0403 0.12 -0.1 433,567 + Echvi_0403 0.12 -0.3 433,568 - Echvi_0403 0.12 +5.5 433,568 - Echvi_0403 0.12 +5.6 433,569 + Echvi_0403 0.12 -1.8 433,569 + Echvi_0403 0.12 +2.3 433,570 - Echvi_0403 0.12 +5.1 433,625 + Echvi_0403 0.13 +0.4 433,681 + Echvi_0403 0.14 +0.8 433,692 + Echvi_0403 0.15 +0.6 433,692 + Echvi_0403 0.15 -0.4 433,752 + Echvi_0403 0.16 -0.6 433,804 + Echvi_0403 0.17 -0.4 433,806 + Echvi_0403 0.17 +0.5 433,829 + Echvi_0403 0.18 +0.9 433,829 + Echvi_0403 0.18 +2.7 433,830 - Echvi_0403 0.18 +6.1 433,867 + Echvi_0403 0.19 -0.9 433,869 + Echvi_0403 0.19 -0.1 433,869 + Echvi_0403 0.19 -0.8 433,869 + Echvi_0403 0.19 +0.6 433,869 + Echvi_0403 0.19 +0.7 433,870 - Echvi_0403 0.19 +4.7 433,870 - Echvi_0403 0.19 +6.3 433,931 + Echvi_0403 0.20 -0.4 433,975 + +0.3 433,982 - Echvi_0403 0.22 +5.9 434,028 + Echvi_0403 0.23 -0.4 434,035 + Echvi_0403 0.23 -1.9 434,036 - Echvi_0403 0.23 +6.5 434,037 + Echvi_0403 0.23 +0.7
Or see this region's nucleotide sequence