Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0396

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0395 and Echvi_0396 are separated by 360 nucleotidesEchvi_0396 and Echvi_0397 are separated by 189 nucleotides Echvi_0395: Echvi_0395 - DNA repair proteins, at 419,045 to 419,515 _0395 Echvi_0396: Echvi_0396 - Transcriptional regulators, at 419,876 to 420,922 _0396 Echvi_0397: Echvi_0397 - hypothetical protein, at 421,112 to 422,476 _0397 Position (kb) 419 420 421Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 418.931 kb on + strandat 418.935 kb on + strandat 418.935 kb on + strandat 418.936 kb on - strandat 418.943 kb on + strandat 418.944 kb on - strandat 419.067 kb on + strandat 419.067 kb on + strandat 419.067 kb on + strandat 419.096 kb on + strand, within Echvi_0395at 419.096 kb on + strand, within Echvi_0395at 419.183 kb on - strand, within Echvi_0395at 419.224 kb on + strand, within Echvi_0395at 419.665 kb on + strandat 419.693 kb on + strandat 419.701 kb on + strandat 419.720 kb on + strandat 419.721 kb on - strandat 419.722 kb on + strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.726 kb on + strandat 419.726 kb on + strandat 419.726 kb on + strandat 419.731 kb on - strandat 419.731 kb on - strandat 419.736 kb on + strandat 419.749 kb on + strandat 419.759 kb on + strandat 419.806 kb on - strandat 419.827 kb on - strandat 419.829 kb on - strandat 419.829 kb on - strandat 419.850 kb on + strandat 419.851 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.882 kb on - strandat 419.914 kb on + strandat 420.020 kb on - strand, within Echvi_0396at 420.025 kb on + strand, within Echvi_0396at 420.028 kb on - strand, within Echvi_0396at 420.036 kb on - strand, within Echvi_0396at 420.036 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.042 kb on - strand, within Echvi_0396at 420.047 kb on + strand, within Echvi_0396at 420.085 kb on + strand, within Echvi_0396at 420.086 kb on - strand, within Echvi_0396at 420.120 kb on + strand, within Echvi_0396at 420.137 kb on - strand, within Echvi_0396at 420.231 kb on + strand, within Echvi_0396at 420.232 kb on - strand, within Echvi_0396at 420.235 kb on + strand, within Echvi_0396at 420.236 kb on - strand, within Echvi_0396at 420.236 kb on - strand, within Echvi_0396at 420.257 kb on + strand, within Echvi_0396at 420.257 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.259 kb on + strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.260 kb on - strand, within Echvi_0396at 420.319 kb on + strand, within Echvi_0396at 420.340 kb on - strand, within Echvi_0396at 420.362 kb on + strand, within Echvi_0396at 420.447 kb on + strand, within Echvi_0396at 420.460 kb on + strand, within Echvi_0396at 420.473 kb on + strand, within Echvi_0396at 420.473 kb on + strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.480 kb on - strand, within Echvi_0396at 420.481 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.492 kb on + strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.493 kb on - strand, within Echvi_0396at 420.499 kb on - strand, within Echvi_0396at 420.529 kb on + strand, within Echvi_0396at 420.530 kb on - strand, within Echvi_0396at 420.530 kb on - strand, within Echvi_0396at 420.530 kb on - strand, within Echvi_0396at 420.534 kb on - strand, within Echvi_0396at 420.534 kb on - strand, within Echvi_0396at 420.535 kb on + strand, within Echvi_0396at 420.536 kb on - strand, within Echvi_0396at 420.573 kb on + strand, within Echvi_0396at 420.573 kb on + strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.574 kb on - strand, within Echvi_0396at 420.604 kb on + strand, within Echvi_0396at 420.621 kb on + strand, within Echvi_0396at 420.622 kb on - strand, within Echvi_0396at 420.630 kb on - strand, within Echvi_0396at 420.630 kb on - strand, within Echvi_0396at 420.641 kb on + strand, within Echvi_0396at 420.645 kb on + strand, within Echvi_0396at 420.650 kb on + strand, within Echvi_0396at 420.668 kb on + strand, within Echvi_0396at 420.690 kb on + strand, within Echvi_0396at 420.691 kb on - strand, within Echvi_0396at 420.691 kb on - strand, within Echvi_0396at 420.693 kb on + strand, within Echvi_0396at 420.719 kb on + strand, within Echvi_0396at 420.742 kb on + strand, within Echvi_0396at 420.743 kb on - strand, within Echvi_0396at 420.743 kb on - strand, within Echvi_0396at 420.744 kb on + strand, within Echvi_0396at 420.744 kb on + strand, within Echvi_0396at 420.744 kb on + strand, within Echvi_0396at 420.770 kb on + strand, within Echvi_0396at 420.774 kb on + strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.775 kb on - strand, within Echvi_0396at 420.776 kb on + strand, within Echvi_0396at 420.776 kb on + strand, within Echvi_0396at 420.776 kb on + strand, within Echvi_0396at 420.777 kb on - strand, within Echvi_0396at 420.777 kb on - strand, within Echvi_0396at 420.777 kb on - strand, within Echvi_0396at 420.824 kb on + strandat 420.842 kb on - strandat 420.863 kb on + strandat 420.863 kb on + strandat 420.874 kb on - strandat 420.874 kb on - strandat 420.943 kb on - strandat 420.949 kb on + strandat 421.060 kb on + strandat 421.072 kb on + strandat 421.207 kb on - strandat 421.245 kb on + strandat 421.246 kb on - strandat 421.275 kb on - strand, within Echvi_0397at 421.322 kb on - strand, within Echvi_0397at 421.485 kb on + strand, within Echvi_0397at 421.557 kb on + strand, within Echvi_0397at 421.561 kb on + strand, within Echvi_0397at 421.583 kb on + strand, within Echvi_0397at 421.583 kb on + strand, within Echvi_0397at 421.584 kb on - strand, within Echvi_0397at 421.593 kb on + strand, within Echvi_0397at 421.594 kb on - strand, within Echvi_0397at 421.608 kb on - strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.668 kb on + strand, within Echvi_0397at 421.669 kb on - strand, within Echvi_0397at 421.669 kb on - strand, within Echvi_0397at 421.691 kb on - strand, within Echvi_0397at 421.736 kb on + strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.772 kb on - strand, within Echvi_0397at 421.838 kb on + strand, within Echvi_0397at 421.901 kb on + strand, within Echvi_0397at 421.901 kb on + strand, within Echvi_0397

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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418,931 + +2.5
418,935 + +0.4
418,935 + -0.4
418,936 - -0.3
418,943 + -0.5
418,944 - -0.6
419,067 + -1.5
419,067 + -1.8
419,067 + +0.1
419,096 + Echvi_0395 0.11 -0.4
419,096 + Echvi_0395 0.11 +0.8
419,183 - Echvi_0395 0.29 +0.2
419,224 + Echvi_0395 0.38 +0.0
419,665 + +0.2
419,693 + +0.4
419,701 + -0.8
419,720 + +0.2
419,721 - -1.7
419,722 + -1.1
419,723 - +0.6
419,723 - -0.1
419,723 - -0.3
419,723 - +0.5
419,723 - -0.3
419,726 + -1.6
419,726 + -1.7
419,726 + -0.5
419,731 - +1.1
419,731 - +0.7
419,736 + +3.2
419,749 + -0.2
419,759 + +0.1
419,806 - +0.2
419,827 - -0.9
419,829 - +0.3
419,829 - +0.5
419,850 + +0.3
419,851 - -0.7
419,882 - +0.3
419,882 - -3.3
419,882 - -3.7
419,882 - -3.0
419,882 - -1.3
419,914 + +0.7
420,020 - Echvi_0396 0.14 -2.3
420,025 + Echvi_0396 0.14 -0.6
420,028 - Echvi_0396 0.15 -2.6
420,036 - Echvi_0396 0.15 +0.9
420,036 - Echvi_0396 0.15 -1.4
420,042 - Echvi_0396 0.16 -2.5
420,042 - Echvi_0396 0.16 -1.8
420,042 - Echvi_0396 0.16 +0.9
420,042 - Echvi_0396 0.16 -1.8
420,047 + Echvi_0396 0.16 -0.1
420,085 + Echvi_0396 0.20 -0.5
420,086 - Echvi_0396 0.20 -1.4
420,120 + Echvi_0396 0.23 -2.4
420,137 - Echvi_0396 0.25 -2.4
420,231 + Echvi_0396 0.34 -2.5
420,232 - Echvi_0396 0.34 -2.4
420,235 + Echvi_0396 0.34 -1.3
420,236 - Echvi_0396 0.34 +0.3
420,236 - Echvi_0396 0.34 -2.2
420,257 + Echvi_0396 0.36 -1.4
420,257 + Echvi_0396 0.36 -2.0
420,259 + Echvi_0396 0.37 -0.4
420,259 + Echvi_0396 0.37 +1.3
420,259 + Echvi_0396 0.37 -0.7
420,259 + Echvi_0396 0.37 -0.7
420,259 + Echvi_0396 0.37 -2.4
420,259 + Echvi_0396 0.37 -1.5
420,259 + Echvi_0396 0.37 -1.8
420,259 + Echvi_0396 0.37 -2.2
420,259 + Echvi_0396 0.37 -2.1
420,259 + Echvi_0396 0.37 -1.5
420,259 + Echvi_0396 0.37 -2.0
420,259 + Echvi_0396 0.37 -1.5
420,259 + Echvi_0396 0.37 -1.9
420,259 + Echvi_0396 0.37 -3.7
420,259 + Echvi_0396 0.37 -1.4
420,259 + Echvi_0396 0.37 -2.8
420,259 + Echvi_0396 0.37 -1.2
420,259 + Echvi_0396 0.37 +0.1
420,260 - Echvi_0396 0.37 +1.4
420,260 - Echvi_0396 0.37 +1.5
420,260 - Echvi_0396 0.37 -1.6
420,260 - Echvi_0396 0.37 -1.1
420,260 - Echvi_0396 0.37 -1.9
420,260 - Echvi_0396 0.37 -3.0
420,260 - Echvi_0396 0.37 -1.1
420,319 + Echvi_0396 0.42 -2.6
420,340 - Echvi_0396 0.44 -2.1
420,362 + Echvi_0396 0.46 +1.1
420,447 + Echvi_0396 0.55 +0.9
420,460 + Echvi_0396 0.56 -2.6
420,473 + Echvi_0396 0.57 -0.7
420,473 + Echvi_0396 0.57 -0.7
420,480 - Echvi_0396 0.58 -2.2
420,480 - Echvi_0396 0.58 -1.3
420,480 - Echvi_0396 0.58 -1.9
420,481 + Echvi_0396 0.58 -1.3
420,492 + Echvi_0396 0.59 -1.1
420,492 + Echvi_0396 0.59 -0.8
420,492 + Echvi_0396 0.59 -1.6
420,493 - Echvi_0396 0.59 -2.9
420,493 - Echvi_0396 0.59 -2.4
420,493 - Echvi_0396 0.59 -1.7
420,493 - Echvi_0396 0.59 -2.1
420,493 - Echvi_0396 0.59 -1.3
420,499 - Echvi_0396 0.60 +2.9
420,529 + Echvi_0396 0.62 -2.4
420,530 - Echvi_0396 0.62 -0.4
420,530 - Echvi_0396 0.62 -0.6
420,530 - Echvi_0396 0.62 -3.8
420,534 - Echvi_0396 0.63 -1.3
420,534 - Echvi_0396 0.63 -0.7
420,535 + Echvi_0396 0.63 -0.1
420,536 - Echvi_0396 0.63 -1.7
420,573 + Echvi_0396 0.67 -1.8
420,573 + Echvi_0396 0.67 -2.7
420,574 - Echvi_0396 0.67 -1.5
420,574 - Echvi_0396 0.67 -1.4
420,574 - Echvi_0396 0.67 +0.9
420,574 - Echvi_0396 0.67 -0.9
420,604 + Echvi_0396 0.70 -0.9
420,621 + Echvi_0396 0.71 -2.8
420,622 - Echvi_0396 0.71 -1.7
420,630 - Echvi_0396 0.72 -2.4
420,630 - Echvi_0396 0.72 -0.9
420,641 + Echvi_0396 0.73 -2.2
420,645 + Echvi_0396 0.73 -0.5
420,650 + Echvi_0396 0.74 +0.5
420,668 + Echvi_0396 0.76 -1.9
420,690 + Echvi_0396 0.78 -1.5
420,691 - Echvi_0396 0.78 -1.5
420,691 - Echvi_0396 0.78 -0.9
420,693 + Echvi_0396 0.78 -2.6
420,719 + Echvi_0396 0.81 -2.1
420,742 + Echvi_0396 0.83 -0.4
420,743 - Echvi_0396 0.83 -1.3
420,743 - Echvi_0396 0.83 -1.2
420,744 + Echvi_0396 0.83 -1.3
420,744 + Echvi_0396 0.83 -1.7
420,744 + Echvi_0396 0.83 -1.3
420,770 + Echvi_0396 0.85 -2.3
420,774 + Echvi_0396 0.86 -1.8
420,775 - Echvi_0396 0.86 -1.4
420,775 - Echvi_0396 0.86 -2.4
420,775 - Echvi_0396 0.86 -1.5
420,775 - Echvi_0396 0.86 -1.7
420,775 - Echvi_0396 0.86 -2.3
420,776 + Echvi_0396 0.86 +0.2
420,776 + Echvi_0396 0.86 -2.0
420,776 + Echvi_0396 0.86 -1.3
420,777 - Echvi_0396 0.86 -2.3
420,777 - Echvi_0396 0.86 -3.2
420,777 - Echvi_0396 0.86 -0.4
420,824 + -1.5
420,842 - -3.4
420,863 + +0.9
420,863 + -1.1
420,874 - -0.9
420,874 - -1.4
420,943 - +4.4
420,949 + +0.3
421,060 + +0.5
421,072 + +1.0
421,207 - +5.8
421,245 + -0.4
421,246 - +5.9
421,275 - Echvi_0397 0.12 +5.6
421,322 - Echvi_0397 0.15 +5.4
421,485 + Echvi_0397 0.27 +0.5
421,557 + Echvi_0397 0.33 -0.5
421,561 + Echvi_0397 0.33 +0.9
421,583 + Echvi_0397 0.35 -0.4
421,583 + Echvi_0397 0.35 -0.5
421,584 - Echvi_0397 0.35 +5.4
421,593 + Echvi_0397 0.35 -1.9
421,594 - Echvi_0397 0.35 +5.4
421,608 - Echvi_0397 0.36 +5.1
421,668 + Echvi_0397 0.41 -2.5
421,668 + Echvi_0397 0.41 -0.4
421,668 + Echvi_0397 0.41 -2.1
421,669 - Echvi_0397 0.41 +5.4
421,669 - Echvi_0397 0.41 +4.1
421,691 - Echvi_0397 0.42 +5.8
421,736 + Echvi_0397 0.46 -1.1
421,772 - Echvi_0397 0.48 +6.1
421,772 - Echvi_0397 0.48 +5.5
421,772 - Echvi_0397 0.48 +5.9
421,772 - Echvi_0397 0.48 +5.4
421,838 + Echvi_0397 0.53 +2.3
421,901 + Echvi_0397 0.58 +1.3
421,901 + Echvi_0397 0.58 -0.2

Or see this region's nucleotide sequence