Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0334 and Echvi_0335 are separated by 2 nucleotides Echvi_0335 and Echvi_0336 are separated by 156 nucleotides Echvi_0336 and Echvi_0337 are separated by 141 nucleotides
Echvi_0334: Echvi_0334 - hypothetical protein, at 351,720 to 357,350
_0334
Echvi_0335: Echvi_0335 - Uncharacterized protein conserved in bacteria, at 357,353 to 358,105
_0335
Echvi_0336: Echvi_0336 - rare lipoprotein A, at 358,262 to 358,624
_0336
Echvi_0337: Echvi_0337 - 3-phosphoglycerate kinase, at 358,766 to 359,965
_0337
Position (kb) 358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 357.280 kb on + strand at 357.284 kb on + strand at 357.284 kb on + strand at 357.284 kb on + strand at 357.285 kb on - strand at 357.285 kb on - strand at 357.285 kb on - strand at 357.285 kb on - strand at 357.285 kb on - strand at 357.333 kb on - strand at 357.340 kb on + strand at 357.340 kb on + strand at 357.340 kb on + strand at 357.343 kb on + strand at 357.348 kb on + strand at 357.349 kb on - strand at 357.352 kb on + strand at 357.394 kb on + strand at 357.395 kb on - strand at 357.395 kb on - strand at 357.397 kb on + strand at 357.398 kb on - strand at 357.511 kb on + strand, within Echvi_0335 at 357.512 kb on - strand, within Echvi_0335 at 357.515 kb on - strand, within Echvi_0335 at 357.539 kb on + strand, within Echvi_0335 at 357.636 kb on - strand, within Echvi_0335 at 357.729 kb on - strand, within Echvi_0335 at 357.941 kb on + strand, within Echvi_0335 at 357.993 kb on - strand, within Echvi_0335 at 357.993 kb on - strand, within Echvi_0335 at 357.994 kb on + strand, within Echvi_0335 at 357.994 kb on + strand, within Echvi_0335 at 357.995 kb on - strand, within Echvi_0335 at 358.036 kb on - strand at 358.036 kb on - strand at 358.036 kb on - strand at 358.169 kb on + strand at 358.193 kb on + strand at 358.204 kb on + strand at 358.222 kb on + strand at 358.222 kb on + strand at 358.222 kb on + strand at 358.260 kb on - strand at 358.262 kb on - strand at 358.275 kb on + strand at 358.276 kb on - strand at 358.276 kb on - strand at 358.368 kb on - strand, within Echvi_0336 at 358.615 kb on - strand at 358.615 kb on - strand at 358.620 kb on - strand at 358.727 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 357,280 + -0.0 357,284 + +1.3 357,284 + +0.2 357,284 + +0.8 357,285 - -0.9 357,285 - +0.7 357,285 - -0.5 357,285 - +0.3 357,285 - +0.8 357,333 - +0.2 357,340 + -0.4 357,340 + +0.3 357,340 + -0.2 357,343 + -0.7 357,348 + -1.8 357,349 - +1.5 357,352 + -0.4 357,394 + +0.1 357,395 - -2.6 357,395 - +0.6 357,397 + +2.1 357,398 - -0.3 357,511 + Echvi_0335 0.21 +0.3 357,512 - Echvi_0335 0.21 -1.2 357,515 - Echvi_0335 0.22 -1.2 357,539 + Echvi_0335 0.25 -2.2 357,636 - Echvi_0335 0.38 +1.7 357,729 - Echvi_0335 0.50 -0.4 357,941 + Echvi_0335 0.78 -0.1 357,993 - Echvi_0335 0.85 -0.4 357,993 - Echvi_0335 0.85 -0.1 357,994 + Echvi_0335 0.85 -0.7 357,994 + Echvi_0335 0.85 -0.5 357,995 - Echvi_0335 0.85 +1.1 358,036 - +0.4 358,036 - +0.2 358,036 - -0.5 358,169 + -2.4 358,193 + +0.4 358,204 + +0.6 358,222 + -1.4 358,222 + +0.3 358,222 + +0.4 358,260 - -0.7 358,262 - +0.2 358,275 + -1.2 358,276 - -0.2 358,276 - -0.1 358,368 - Echvi_0336 0.29 -0.4 358,615 - +0.2 358,615 - -0.7 358,620 - +1.3 358,727 + -2.0
Or see this region's nucleotide sequence