Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21440

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21430 and CA264_21435 are separated by 259 nucleotidesCA264_21435 and CA264_21440 are separated by 153 nucleotidesCA264_21440 and CA264_21445 are separated by 21 nucleotides CA264_21430: CA264_21430 - DDE transposase, at 151,502 to 152,329 _21430 CA264_21435: CA264_21435 - hypothetical protein, at 152,589 to 152,876 _21435 CA264_21440: CA264_21440 - metal transporter, at 153,030 to 154,310 _21440 CA264_21445: CA264_21445 - metal transporter, at 154,332 to 156,236 _21445 Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1at 152.094 kb on + strand, within CA264_21430at 152.144 kb on + strand, within CA264_21430at 152.144 kb on + strand, within CA264_21430at 152.150 kb on + strand, within CA264_21430at 152.151 kb on - strand, within CA264_21430at 152.151 kb on - strand, within CA264_21430at 152.184 kb on + strand, within CA264_21430at 152.188 kb on - strand, within CA264_21430at 152.341 kb on - strandat 152.341 kb on - strandat 152.341 kb on - strandat 152.373 kb on - strandat 152.377 kb on - strandat 152.377 kb on - strandat 152.394 kb on - strandat 152.399 kb on + strandat 152.425 kb on + strandat 152.441 kb on + strandat 152.441 kb on + strandat 152.447 kb on + strandat 152.526 kb on - strandat 152.526 kb on - strandat 152.526 kb on - strandat 152.637 kb on - strand, within CA264_21435at 152.693 kb on - strand, within CA264_21435at 153.115 kb on - strandat 153.310 kb on - strand, within CA264_21440at 153.456 kb on - strand, within CA264_21440at 153.619 kb on - strand, within CA264_21440at 153.765 kb on - strand, within CA264_21440at 153.940 kb on - strand, within CA264_21440at 154.011 kb on - strand, within CA264_21440at 154.185 kb on - strandat 154.341 kb on + strandat 154.428 kb on - strandat 154.428 kb on - strandat 154.545 kb on - strand, within CA264_21445at 154.637 kb on + strand, within CA264_21445at 154.638 kb on - strand, within CA264_21445at 154.923 kb on - strand, within CA264_21445at 155.224 kb on - strand, within CA264_21445at 155.308 kb on + strand, within CA264_21445

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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152,094 + CA264_21430 0.71 +0.4
152,144 + CA264_21430 0.78 +0.4
152,144 + CA264_21430 0.78 -0.0
152,150 + CA264_21430 0.78 +0.1
152,151 - CA264_21430 0.78 -2.3
152,151 - CA264_21430 0.78 -0.1
152,184 + CA264_21430 0.82 +0.4
152,188 - CA264_21430 0.83 -2.1
152,341 - -0.7
152,341 - +0.2
152,341 - -0.0
152,373 - -1.1
152,377 - -0.2
152,377 - -0.3
152,394 - -0.6
152,399 + -0.2
152,425 + +0.7
152,441 + -0.6
152,441 + +1.6
152,447 + -1.0
152,526 - -0.4
152,526 - +0.9
152,526 - +0.3
152,637 - CA264_21435 0.17 +0.4
152,693 - CA264_21435 0.36 -0.4
153,115 - +0.1
153,310 - CA264_21440 0.22 -0.2
153,456 - CA264_21440 0.33 +0.2
153,619 - CA264_21440 0.46 +1.1
153,765 - CA264_21440 0.57 -0.4
153,940 - CA264_21440 0.71 -0.3
154,011 - CA264_21440 0.77 +0.6
154,185 - -1.6
154,341 + -0.6
154,428 - +0.4
154,428 - -0.5
154,545 - CA264_21445 0.11 +0.9
154,637 + CA264_21445 0.16 +0.7
154,638 - CA264_21445 0.16 -0.3
154,923 - CA264_21445 0.31 -0.5
155,224 - CA264_21445 0.47 -0.1
155,308 + CA264_21445 0.51 +0.7

Or see this region's nucleotide sequence