Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21025

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21020 and CA264_21025 are separated by 1 nucleotidesCA264_21025 and CA264_21030 are separated by 35 nucleotidesCA264_21030 and CA264_21035 are separated by 104 nucleotides CA264_21020: CA264_21020 - conjugative transposon protein TraM, at 65,177 to 66,355 _21020 CA264_21025: CA264_21025 - conjugative transposon protein TraN, at 66,357 to 67,145 _21025 CA264_21030: CA264_21030 - hypothetical protein, at 67,181 to 67,600 _21030 CA264_21035: CA264_21035 - mobilization protein, at 67,705 to 69,672 _21035 Position (kb) 66 67 68Strain fitness (log2 ratio) -1 0 1 2at 65.374 kb on + strand, within CA264_21020at 65.402 kb on - strand, within CA264_21020at 65.407 kb on + strand, within CA264_21020at 65.417 kb on + strand, within CA264_21020at 65.417 kb on + strand, within CA264_21020at 65.557 kb on + strand, within CA264_21020at 65.601 kb on - strand, within CA264_21020at 65.666 kb on + strand, within CA264_21020at 65.667 kb on - strand, within CA264_21020at 65.834 kb on - strand, within CA264_21020at 65.893 kb on + strand, within CA264_21020at 65.894 kb on - strand, within CA264_21020at 65.894 kb on - strand, within CA264_21020at 65.894 kb on - strand, within CA264_21020at 65.960 kb on + strand, within CA264_21020at 65.960 kb on + strand, within CA264_21020at 65.960 kb on + strand, within CA264_21020at 65.960 kb on + strand, within CA264_21020at 65.961 kb on - strand, within CA264_21020at 65.961 kb on - strand, within CA264_21020at 65.961 kb on - strand, within CA264_21020at 65.961 kb on - strand, within CA264_21020at 65.979 kb on + strand, within CA264_21020at 65.993 kb on + strand, within CA264_21020at 65.999 kb on + strand, within CA264_21020at 66.019 kb on + strand, within CA264_21020at 66.019 kb on + strand, within CA264_21020at 66.019 kb on + strand, within CA264_21020at 66.052 kb on + strand, within CA264_21020at 66.052 kb on + strand, within CA264_21020at 66.052 kb on + strand, within CA264_21020at 66.060 kb on - strand, within CA264_21020at 66.091 kb on + strand, within CA264_21020at 66.096 kb on - strand, within CA264_21020at 66.122 kb on + strand, within CA264_21020at 66.122 kb on + strand, within CA264_21020at 66.122 kb on + strand, within CA264_21020at 66.123 kb on - strand, within CA264_21020at 66.234 kb on - strand, within CA264_21020at 66.234 kb on - strand, within CA264_21020at 66.234 kb on - strand, within CA264_21020at 66.304 kb on + strandat 66.329 kb on + strandat 66.329 kb on + strandat 66.330 kb on - strandat 66.340 kb on + strandat 66.343 kb on + strandat 66.354 kb on - strandat 66.367 kb on + strandat 66.376 kb on + strandat 66.376 kb on + strandat 66.376 kb on + strandat 66.377 kb on - strandat 66.378 kb on + strandat 66.379 kb on - strandat 66.431 kb on - strandat 66.431 kb on - strandat 66.431 kb on - strandat 66.431 kb on - strandat 66.481 kb on + strand, within CA264_21025at 66.486 kb on + strand, within CA264_21025at 66.486 kb on + strand, within CA264_21025at 66.487 kb on - strand, within CA264_21025at 66.487 kb on - strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.490 kb on + strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.491 kb on - strand, within CA264_21025at 66.494 kb on + strand, within CA264_21025at 66.495 kb on - strand, within CA264_21025at 66.523 kb on + strand, within CA264_21025at 66.524 kb on - strand, within CA264_21025at 66.524 kb on - strand, within CA264_21025at 66.579 kb on - strand, within CA264_21025at 66.582 kb on - strand, within CA264_21025at 66.582 kb on - strand, within CA264_21025at 66.615 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.617 kb on + strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.618 kb on - strand, within CA264_21025at 66.627 kb on + strand, within CA264_21025at 66.663 kb on - strand, within CA264_21025at 66.664 kb on + strand, within CA264_21025at 66.665 kb on - strand, within CA264_21025at 66.771 kb on - strand, within CA264_21025at 66.771 kb on - strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.819 kb on + strand, within CA264_21025at 66.820 kb on - strand, within CA264_21025at 66.820 kb on - strand, within CA264_21025at 66.822 kb on - strand, within CA264_21025at 66.851 kb on - strand, within CA264_21025at 66.857 kb on + strand, within CA264_21025at 66.881 kb on + strand, within CA264_21025at 67.114 kb on - strandat 67.141 kb on + strandat 67.142 kb on - strandat 67.176 kb on + strandat 67.181 kb on - strandat 67.209 kb on - strandat 67.293 kb on - strand, within CA264_21030at 67.322 kb on + strand, within CA264_21030at 67.325 kb on - strand, within CA264_21030at 67.371 kb on - strand, within CA264_21030at 67.455 kb on + strand, within CA264_21030at 67.456 kb on - strand, within CA264_21030at 67.456 kb on - strand, within CA264_21030at 67.539 kb on + strand, within CA264_21030at 67.540 kb on - strand, within CA264_21030at 67.540 kb on - strand, within CA264_21030at 67.668 kb on + strandat 67.668 kb on + strandat 67.668 kb on + strandat 67.676 kb on - strandat 67.695 kb on - strandat 67.704 kb on + strandat 67.755 kb on + strandat 67.756 kb on - strandat 67.768 kb on - strandat 67.781 kb on + strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.782 kb on - strandat 67.798 kb on - strandat 67.812 kb on + strandat 67.812 kb on + strandat 67.813 kb on - strandat 67.816 kb on + strandat 67.816 kb on + strandat 67.817 kb on - strandat 67.845 kb on - strandat 67.845 kb on - strandat 67.861 kb on + strandat 67.861 kb on + strandat 67.874 kb on - strandat 67.874 kb on - strandat 67.874 kb on - strandat 67.874 kb on - strandat 67.965 kb on + strand, within CA264_21035at 68.077 kb on + strand, within CA264_21035at 68.077 kb on + strand, within CA264_21035at 68.077 kb on + strand, within CA264_21035at 68.117 kb on + strand, within CA264_21035at 68.118 kb on - strand, within CA264_21035at 68.118 kb on - strand, within CA264_21035at 68.142 kb on + strand, within CA264_21035at 68.143 kb on - strand, within CA264_21035at 68.144 kb on + strand, within CA264_21035at 68.145 kb on - strand, within CA264_21035

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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65,374 + CA264_21020 0.17 -0.4
65,402 - CA264_21020 0.19 +0.7
65,407 + CA264_21020 0.20 -0.3
65,417 + CA264_21020 0.20 +0.4
65,417 + CA264_21020 0.20 -1.3
65,557 + CA264_21020 0.32 +0.1
65,601 - CA264_21020 0.36 -0.3
65,666 + CA264_21020 0.41 +0.0
65,667 - CA264_21020 0.42 +0.7
65,834 - CA264_21020 0.56 -1.1
65,893 + CA264_21020 0.61 +2.3
65,894 - CA264_21020 0.61 -0.1
65,894 - CA264_21020 0.61 +0.4
65,894 - CA264_21020 0.61 +1.5
65,960 + CA264_21020 0.66 -0.3
65,960 + CA264_21020 0.66 +0.7
65,960 + CA264_21020 0.66 +1.0
65,960 + CA264_21020 0.66 +1.1
65,961 - CA264_21020 0.66 +0.3
65,961 - CA264_21020 0.66 -0.3
65,961 - CA264_21020 0.66 +0.1
65,961 - CA264_21020 0.66 -1.3
65,979 + CA264_21020 0.68 +0.7
65,993 + CA264_21020 0.69 +0.0
65,999 + CA264_21020 0.70 +1.0
66,019 + CA264_21020 0.71 +0.3
66,019 + CA264_21020 0.71 -0.1
66,019 + CA264_21020 0.71 +1.2
66,052 + CA264_21020 0.74 -0.3
66,052 + CA264_21020 0.74 -1.3
66,052 + CA264_21020 0.74 -1.1
66,060 - CA264_21020 0.75 +0.6
66,091 + CA264_21020 0.78 -0.1
66,096 - CA264_21020 0.78 +0.5
66,122 + CA264_21020 0.80 +0.5
66,122 + CA264_21020 0.80 -1.1
66,122 + CA264_21020 0.80 +2.1
66,123 - CA264_21020 0.80 -0.1
66,234 - CA264_21020 0.90 -0.6
66,234 - CA264_21020 0.90 -0.3
66,234 - CA264_21020 0.90 +1.4
66,304 + +0.0
66,329 + -0.1
66,329 + -0.2
66,330 - -1.4
66,340 + -1.6
66,343 + +0.1
66,354 - -1.2
66,367 + +0.3
66,376 + +0.2
66,376 + -0.6
66,376 + +0.2
66,377 - +0.7
66,378 + +0.4
66,379 - -0.1
66,431 - -0.2
66,431 - -0.1
66,431 - -0.0
66,431 - -0.2
66,481 + CA264_21025 0.16 -0.5
66,486 + CA264_21025 0.16 +1.1
66,486 + CA264_21025 0.16 -0.7
66,487 - CA264_21025 0.16 -0.6
66,487 - CA264_21025 0.16 -1.1
66,490 + CA264_21025 0.17 +0.9
66,490 + CA264_21025 0.17 -0.1
66,490 + CA264_21025 0.17 +1.0
66,490 + CA264_21025 0.17 -0.7
66,490 + CA264_21025 0.17 +0.1
66,491 - CA264_21025 0.17 -0.1
66,491 - CA264_21025 0.17 +0.5
66,491 - CA264_21025 0.17 -0.2
66,491 - CA264_21025 0.17 +0.6
66,491 - CA264_21025 0.17 -0.4
66,494 + CA264_21025 0.17 +0.6
66,495 - CA264_21025 0.17 +1.1
66,523 + CA264_21025 0.21 -0.0
66,524 - CA264_21025 0.21 +0.4
66,524 - CA264_21025 0.21 +0.2
66,579 - CA264_21025 0.28 -1.2
66,582 - CA264_21025 0.29 +0.1
66,582 - CA264_21025 0.29 +0.7
66,615 + CA264_21025 0.33 +0.0
66,617 + CA264_21025 0.33 +0.4
66,617 + CA264_21025 0.33 +0.5
66,617 + CA264_21025 0.33 -0.6
66,617 + CA264_21025 0.33 +1.0
66,618 - CA264_21025 0.33 -0.3
66,618 - CA264_21025 0.33 -1.4
66,618 - CA264_21025 0.33 +0.0
66,618 - CA264_21025 0.33 +0.0
66,627 + CA264_21025 0.34 -0.2
66,663 - CA264_21025 0.39 +0.4
66,664 + CA264_21025 0.39 +0.5
66,665 - CA264_21025 0.39 +0.6
66,771 - CA264_21025 0.52 +0.1
66,771 - CA264_21025 0.52 -0.6
66,819 + CA264_21025 0.59 +0.1
66,819 + CA264_21025 0.59 -0.3
66,819 + CA264_21025 0.59 +0.2
66,819 + CA264_21025 0.59 -0.0
66,820 - CA264_21025 0.59 -1.6
66,820 - CA264_21025 0.59 +0.9
66,822 - CA264_21025 0.59 +0.1
66,851 - CA264_21025 0.63 +0.5
66,857 + CA264_21025 0.63 +1.6
66,881 + CA264_21025 0.66 +0.2
67,114 - +2.0
67,141 + -0.3
67,142 - +0.3
67,176 + -0.3
67,181 - -0.1
67,209 - +0.4
67,293 - CA264_21030 0.27 +0.2
67,322 + CA264_21030 0.34 -0.1
67,325 - CA264_21030 0.34 +0.3
67,371 - CA264_21030 0.45 +0.4
67,455 + CA264_21030 0.65 -0.7
67,456 - CA264_21030 0.65 +1.1
67,456 - CA264_21030 0.65 -0.2
67,539 + CA264_21030 0.85 +1.1
67,540 - CA264_21030 0.85 -0.4
67,540 - CA264_21030 0.85 -0.3
67,668 + -0.7
67,668 + +0.4
67,668 + +0.3
67,676 - +0.1
67,695 - -0.1
67,704 + +0.5
67,755 + +0.4
67,756 - -0.0
67,768 - +1.0
67,781 + +0.7
67,782 - -0.3
67,782 - +0.1
67,782 - -0.5
67,782 - +0.7
67,782 - -1.1
67,798 - +0.3
67,812 + -0.3
67,812 + +0.1
67,813 - -0.0
67,816 + +0.1
67,816 + +0.1
67,817 - -0.2
67,845 - +0.6
67,845 - +0.9
67,861 + +0.7
67,861 + -0.3
67,874 - +0.1
67,874 - +0.1
67,874 - -0.3
67,874 - -0.4
67,965 + CA264_21035 0.13 +0.4
68,077 + CA264_21035 0.19 +0.1
68,077 + CA264_21035 0.19 +0.8
68,077 + CA264_21035 0.19 +0.5
68,117 + CA264_21035 0.21 -0.1
68,118 - CA264_21035 0.21 +0.3
68,118 - CA264_21035 0.21 -0.6
68,142 + CA264_21035 0.22 -0.7
68,143 - CA264_21035 0.22 -1.1
68,144 + CA264_21035 0.22 +1.7
68,145 - CA264_21035 0.22 -0.4

Or see this region's nucleotide sequence