Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20775 and CA264_20780 are separated by 532 nucleotides CA264_20780 and CA264_20785 are separated by 243 nucleotides CA264_20785 and CA264_20790 are separated by 46 nucleotides
CA264_20775: CA264_20775 - hypothetical protein, at 15,851 to 16,450
_20775
CA264_20780: CA264_20780 - alpha-glucan family phosphorylase, at 16,983 to 18,638
_20780
CA264_20785: CA264_20785 - hypothetical protein, at 18,882 to 19,229
_20785
CA264_20790: CA264_20790 - glyceraldehyde-3-phosphate dehydrogenase, at 19,276 to 20,313
_20790
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 15.983 kb on - strand, within CA264_20775 at 16.066 kb on + strand, within CA264_20775 at 16.066 kb on + strand, within CA264_20775 at 16.067 kb on - strand, within CA264_20775 at 16.087 kb on + strand, within CA264_20775 at 16.088 kb on - strand, within CA264_20775 at 16.088 kb on - strand, within CA264_20775 at 16.088 kb on - strand, within CA264_20775 at 16.144 kb on + strand, within CA264_20775 at 16.144 kb on + strand, within CA264_20775 at 16.145 kb on - strand, within CA264_20775 at 16.145 kb on - strand, within CA264_20775 at 16.207 kb on + strand, within CA264_20775 at 16.207 kb on + strand, within CA264_20775 at 16.208 kb on - strand, within CA264_20775 at 16.312 kb on + strand, within CA264_20775 at 16.312 kb on + strand, within CA264_20775 at 16.312 kb on + strand, within CA264_20775 at 16.313 kb on - strand, within CA264_20775 at 16.313 kb on - strand, within CA264_20775 at 16.365 kb on - strand, within CA264_20775 at 16.367 kb on - strand, within CA264_20775 at 16.396 kb on + strand at 16.397 kb on - strand at 16.430 kb on + strand at 16.431 kb on - strand at 16.453 kb on + strand at 16.453 kb on + strand at 16.462 kb on + strand at 16.525 kb on + strand at 16.526 kb on - strand at 16.526 kb on - strand at 16.548 kb on + strand at 16.549 kb on - strand at 16.552 kb on + strand at 16.553 kb on - strand at 16.553 kb on - strand at 16.553 kb on - strand at 16.557 kb on - strand at 16.592 kb on + strand at 16.641 kb on - strand at 16.670 kb on + strand at 16.670 kb on + strand at 16.670 kb on + strand at 16.686 kb on + strand at 16.686 kb on + strand at 16.697 kb on + strand at 16.698 kb on - strand at 16.734 kb on + strand at 16.734 kb on + strand at 16.735 kb on - strand at 16.735 kb on - strand at 16.735 kb on - strand at 16.735 kb on - strand at 16.741 kb on - strand at 16.745 kb on + strand at 16.763 kb on - strand at 16.767 kb on + strand at 16.767 kb on + strand at 16.767 kb on + strand at 16.858 kb on + strand at 16.868 kb on - strand at 16.868 kb on - strand at 16.883 kb on + strand at 16.951 kb on + strand at 16.951 kb on + strand at 16.951 kb on + strand at 16.951 kb on + strand at 16.954 kb on + strand at 16.992 kb on - strand at 16.993 kb on + strand at 16.994 kb on - strand at 16.994 kb on - strand at 16.994 kb on - strand at 17.006 kb on - strand at 17.008 kb on + strand at 17.008 kb on + strand at 17.008 kb on + strand at 17.008 kb on + strand at 17.009 kb on - strand at 17.098 kb on + strand at 17.130 kb on - strand at 17.289 kb on - strand, within CA264_20780 at 17.327 kb on + strand, within CA264_20780 at 17.331 kb on + strand, within CA264_20780 at 17.386 kb on - strand, within CA264_20780 at 17.408 kb on - strand, within CA264_20780 at 17.424 kb on + strand, within CA264_20780 at 17.424 kb on + strand, within CA264_20780 at 17.455 kb on + strand, within CA264_20780 at 17.455 kb on + strand, within CA264_20780 at 17.456 kb on - strand, within CA264_20780 at 17.487 kb on + strand, within CA264_20780 at 17.488 kb on - strand, within CA264_20780 at 17.515 kb on - strand, within CA264_20780 at 17.519 kb on + strand, within CA264_20780 at 17.520 kb on - strand, within CA264_20780 at 17.567 kb on - strand, within CA264_20780 at 17.589 kb on + strand, within CA264_20780 at 17.710 kb on + strand, within CA264_20780 at 17.711 kb on - strand, within CA264_20780 at 17.716 kb on + strand, within CA264_20780 at 17.716 kb on + strand, within CA264_20780 at 17.716 kb on + strand, within CA264_20780 at 17.717 kb on - strand, within CA264_20780 at 17.717 kb on - strand, within CA264_20780 at 17.717 kb on - strand, within CA264_20780 at 17.717 kb on - strand, within CA264_20780 at 17.717 kb on - strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.720 kb on + strand, within CA264_20780 at 17.721 kb on - strand, within CA264_20780 at 17.721 kb on - strand, within CA264_20780 at 17.721 kb on - strand, within CA264_20780 at 17.722 kb on + strand, within CA264_20780 at 17.723 kb on - strand, within CA264_20780 at 17.723 kb on - strand, within CA264_20780 at 17.743 kb on + strand, within CA264_20780 at 17.743 kb on + strand, within CA264_20780 at 17.764 kb on + strand, within CA264_20780 at 17.764 kb on + strand, within CA264_20780 at 17.765 kb on - strand, within CA264_20780 at 17.765 kb on - strand, within CA264_20780 at 17.768 kb on + strand, within CA264_20780 at 17.769 kb on - strand, within CA264_20780 at 17.769 kb on - strand, within CA264_20780 at 17.769 kb on - strand, within CA264_20780 at 17.769 kb on - strand, within CA264_20780 at 17.800 kb on - strand, within CA264_20780 at 17.812 kb on - strand, within CA264_20780 at 17.826 kb on - strand, within CA264_20780 at 17.885 kb on + strand, within CA264_20780 at 17.895 kb on + strand, within CA264_20780 at 17.895 kb on + strand, within CA264_20780 at 18.012 kb on + strand, within CA264_20780 at 18.046 kb on + strand, within CA264_20780 at 18.050 kb on + strand, within CA264_20780 at 18.050 kb on + strand, within CA264_20780 at 18.100 kb on + strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.101 kb on - strand, within CA264_20780 at 18.102 kb on + strand, within CA264_20780 at 18.102 kb on + strand, within CA264_20780 at 18.103 kb on - strand, within CA264_20780 at 18.103 kb on - strand, within CA264_20780 at 18.137 kb on + strand, within CA264_20780 at 18.138 kb on - strand, within CA264_20780 at 18.156 kb on + strand, within CA264_20780 at 18.156 kb on + strand, within CA264_20780 at 18.157 kb on - strand, within CA264_20780 at 18.157 kb on - strand, within CA264_20780 at 18.162 kb on - strand, within CA264_20780 at 18.196 kb on + strand, within CA264_20780 at 18.197 kb on - strand, within CA264_20780 at 18.226 kb on + strand, within CA264_20780 at 18.227 kb on - strand, within CA264_20780 at 18.253 kb on - strand, within CA264_20780 at 18.295 kb on + strand, within CA264_20780 at 18.296 kb on - strand, within CA264_20780 at 18.298 kb on + strand, within CA264_20780 at 18.299 kb on - strand, within CA264_20780 at 18.328 kb on - strand, within CA264_20780 at 18.371 kb on - strand, within CA264_20780 at 18.372 kb on + strand, within CA264_20780 at 18.373 kb on - strand, within CA264_20780 at 18.373 kb on - strand, within CA264_20780 at 18.398 kb on + strand, within CA264_20780 at 18.398 kb on + strand, within CA264_20780 at 18.399 kb on - strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.413 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.427 kb on + strand, within CA264_20780 at 18.428 kb on - strand, within CA264_20780 at 18.428 kb on - strand, within CA264_20780 at 18.446 kb on - strand, within CA264_20780 at 18.527 kb on + strand at 18.529 kb on + strand at 18.529 kb on + strand at 18.530 kb on - strand at 18.557 kb on - strand at 18.571 kb on + strand at 18.571 kb on + strand at 18.572 kb on - strand at 18.589 kb on + strand at 18.590 kb on - strand at 18.601 kb on + strand at 18.602 kb on - strand at 18.607 kb on + strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.615 kb on + strand at 18.616 kb on - strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.638 kb on + strand at 18.639 kb on - strand at 18.639 kb on - strand at 18.642 kb on + strand at 18.643 kb on - strand at 18.647 kb on + strand at 18.710 kb on + strand at 18.732 kb on + strand at 18.759 kb on - strand at 18.823 kb on + strand at 18.825 kb on + strand at 18.825 kb on + strand at 18.826 kb on - strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.863 kb on + strand at 18.864 kb on - strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.900 kb on + strand at 18.901 kb on - strand at 18.901 kb on - strand at 18.912 kb on + strand at 18.913 kb on - strand at 18.955 kb on - strand, within CA264_20785 at 18.973 kb on + strand, within CA264_20785 at 18.974 kb on - strand, within CA264_20785 at 19.051 kb on + strand, within CA264_20785 at 19.051 kb on + strand, within CA264_20785 at 19.162 kb on + strand, within CA264_20785 at 19.163 kb on - strand, within CA264_20785 at 19.164 kb on + strand, within CA264_20785 at 19.165 kb on - strand, within CA264_20785 at 19.165 kb on - strand, within CA264_20785 at 19.166 kb on + strand, within CA264_20785 at 19.166 kb on + strand, within CA264_20785 at 19.218 kb on - strand at 19.241 kb on + strand at 19.246 kb on + strand at 19.246 kb on + strand at 19.247 kb on - strand at 19.247 kb on - strand at 19.247 kb on - strand at 19.282 kb on + strand at 19.283 kb on - strand at 19.421 kb on + strand, within CA264_20790 at 19.421 kb on + strand, within CA264_20790 at 19.422 kb on - strand, within CA264_20790 at 19.441 kb on + strand, within CA264_20790 at 19.475 kb on + strand, within CA264_20790 at 19.475 kb on + strand, within CA264_20790 at 19.476 kb on - strand, within CA264_20790 at 19.476 kb on - strand, within CA264_20790 at 19.519 kb on + strand, within CA264_20790
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 15,983 - CA264_20775 0.22 -0.4 16,066 + CA264_20775 0.36 -0.5 16,066 + CA264_20775 0.36 +0.3 16,067 - CA264_20775 0.36 -0.4 16,087 + CA264_20775 0.39 +0.2 16,088 - CA264_20775 0.40 -0.1 16,088 - CA264_20775 0.40 +0.6 16,088 - CA264_20775 0.40 +0.5 16,144 + CA264_20775 0.49 +0.3 16,144 + CA264_20775 0.49 +3.3 16,145 - CA264_20775 0.49 -2.7 16,145 - CA264_20775 0.49 +0.2 16,207 + CA264_20775 0.59 +0.2 16,207 + CA264_20775 0.59 +0.5 16,208 - CA264_20775 0.59 +0.5 16,312 + CA264_20775 0.77 -0.6 16,312 + CA264_20775 0.77 +0.7 16,312 + CA264_20775 0.77 +0.6 16,313 - CA264_20775 0.77 -0.4 16,313 - CA264_20775 0.77 -1.0 16,365 - CA264_20775 0.86 -0.1 16,367 - CA264_20775 0.86 -0.4 16,396 + +0.0 16,397 - +0.3 16,430 + +1.2 16,431 - +0.9 16,453 + -0.3 16,453 + -0.1 16,462 + +0.2 16,525 + -0.0 16,526 - +0.7 16,526 - +0.2 16,548 + -0.3 16,549 - +0.8 16,552 + -0.0 16,553 - +0.3 16,553 - +0.6 16,553 - +1.1 16,557 - +0.2 16,592 + -1.3 16,641 - -1.0 16,670 + -0.1 16,670 + -0.2 16,670 + -1.3 16,686 + -0.2 16,686 + -0.5 16,697 + -1.5 16,698 - -1.3 16,734 + -0.6 16,734 + -0.1 16,735 - +1.1 16,735 - +0.7 16,735 - -0.6 16,735 - -0.8 16,741 - -0.5 16,745 + -0.1 16,763 - +0.6 16,767 + +0.1 16,767 + +0.2 16,767 + +3.5 16,858 + -1.0 16,868 - -1.7 16,868 - -0.2 16,883 + -0.4 16,951 + +0.3 16,951 + -1.9 16,951 + +0.5 16,951 + -0.2 16,954 + -0.0 16,992 - +1.0 16,993 + +0.5 16,994 - -0.7 16,994 - +1.5 16,994 - +0.6 17,006 - +0.2 17,008 + -0.3 17,008 + +0.7 17,008 + +0.0 17,008 + -0.2 17,009 - +0.5 17,098 + +0.4 17,130 - -0.0 17,289 - CA264_20780 0.18 -0.1 17,327 + CA264_20780 0.21 -0.3 17,331 + CA264_20780 0.21 -2.4 17,386 - CA264_20780 0.24 -0.3 17,408 - CA264_20780 0.26 +0.1 17,424 + CA264_20780 0.27 -0.7 17,424 + CA264_20780 0.27 -0.1 17,455 + CA264_20780 0.29 +0.7 17,455 + CA264_20780 0.29 +0.7 17,456 - CA264_20780 0.29 -0.3 17,487 + CA264_20780 0.30 -0.6 17,488 - CA264_20780 0.30 +0.3 17,515 - CA264_20780 0.32 -1.1 17,519 + CA264_20780 0.32 +0.1 17,520 - CA264_20780 0.32 -1.3 17,567 - CA264_20780 0.35 +0.7 17,589 + CA264_20780 0.37 +0.0 17,710 + CA264_20780 0.44 +1.3 17,711 - CA264_20780 0.44 -0.3 17,716 + CA264_20780 0.44 +0.1 17,716 + CA264_20780 0.44 -0.9 17,716 + CA264_20780 0.44 +0.3 17,717 - CA264_20780 0.44 +0.5 17,717 - CA264_20780 0.44 +0.2 17,717 - CA264_20780 0.44 +0.7 17,717 - CA264_20780 0.44 +1.4 17,717 - CA264_20780 0.44 +0.1 17,720 + CA264_20780 0.45 +0.4 17,720 + CA264_20780 0.45 -2.4 17,720 + CA264_20780 0.45 -0.1 17,720 + CA264_20780 0.45 +0.4 17,720 + CA264_20780 0.45 +0.6 17,720 + CA264_20780 0.45 +0.3 17,720 + CA264_20780 0.45 +0.4 17,721 - CA264_20780 0.45 +0.2 17,721 - CA264_20780 0.45 -0.3 17,721 - CA264_20780 0.45 +0.5 17,722 + CA264_20780 0.45 +0.6 17,723 - CA264_20780 0.45 +0.4 17,723 - CA264_20780 0.45 +0.4 17,743 + CA264_20780 0.46 -0.6 17,743 + CA264_20780 0.46 +0.5 17,764 + CA264_20780 0.47 -0.3 17,764 + CA264_20780 0.47 +0.1 17,765 - CA264_20780 0.47 -0.9 17,765 - CA264_20780 0.47 -0.1 17,768 + CA264_20780 0.47 +0.6 17,769 - CA264_20780 0.47 -2.3 17,769 - CA264_20780 0.47 -0.5 17,769 - CA264_20780 0.47 -2.1 17,769 - CA264_20780 0.47 +1.1 17,800 - CA264_20780 0.49 -0.0 17,812 - CA264_20780 0.50 +0.5 17,826 - CA264_20780 0.51 +0.6 17,885 + CA264_20780 0.54 +0.1 17,895 + CA264_20780 0.55 -1.3 17,895 + CA264_20780 0.55 -0.9 18,012 + CA264_20780 0.62 -0.1 18,046 + CA264_20780 0.64 -0.7 18,050 + CA264_20780 0.64 -0.1 18,050 + CA264_20780 0.64 +0.7 18,100 + CA264_20780 0.67 +0.1 18,101 - CA264_20780 0.68 -1.1 18,101 - CA264_20780 0.68 -0.7 18,101 - CA264_20780 0.68 +1.1 18,101 - CA264_20780 0.68 +0.1 18,102 + CA264_20780 0.68 -0.4 18,102 + CA264_20780 0.68 +0.1 18,103 - CA264_20780 0.68 +0.3 18,103 - CA264_20780 0.68 -0.9 18,137 + CA264_20780 0.70 +0.0 18,138 - CA264_20780 0.70 -0.5 18,156 + CA264_20780 0.71 +0.2 18,156 + CA264_20780 0.71 +2.1 18,157 - CA264_20780 0.71 +1.3 18,157 - CA264_20780 0.71 +0.4 18,162 - CA264_20780 0.71 +0.4 18,196 + CA264_20780 0.73 -0.1 18,197 - CA264_20780 0.73 -0.6 18,226 + CA264_20780 0.75 -1.6 18,227 - CA264_20780 0.75 -1.0 18,253 - CA264_20780 0.77 -0.3 18,295 + CA264_20780 0.79 +0.1 18,296 - CA264_20780 0.79 +0.5 18,298 + CA264_20780 0.79 +0.0 18,299 - CA264_20780 0.79 -0.2 18,328 - CA264_20780 0.81 -0.6 18,371 - CA264_20780 0.84 -0.2 18,372 + CA264_20780 0.84 +1.4 18,373 - CA264_20780 0.84 +0.1 18,373 - CA264_20780 0.84 -1.3 18,398 + CA264_20780 0.85 +0.2 18,398 + CA264_20780 0.85 +0.3 18,399 - CA264_20780 0.86 -0.1 18,413 + CA264_20780 0.86 -1.3 18,413 + CA264_20780 0.86 -0.7 18,413 + CA264_20780 0.86 -0.1 18,413 + CA264_20780 0.86 +0.1 18,427 + CA264_20780 0.87 -0.0 18,427 + CA264_20780 0.87 -0.3 18,427 + CA264_20780 0.87 -0.4 18,428 - CA264_20780 0.87 +1.0 18,428 - CA264_20780 0.87 -0.1 18,446 - CA264_20780 0.88 +0.4 18,527 + -1.6 18,529 + -0.3 18,529 + +1.1 18,530 - -0.2 18,557 - -1.1 18,571 + +0.1 18,571 + +0.4 18,572 - -1.6 18,589 + -1.6 18,590 - +2.0 18,601 + +0.3 18,602 - +0.2 18,607 + +0.5 18,608 - -0.6 18,608 - +0.2 18,608 - +0.6 18,608 - -0.1 18,615 + +0.3 18,616 - +0.7 18,638 + +0.1 18,638 + +0.6 18,638 + -0.7 18,638 + +0.2 18,639 - -0.2 18,639 - -0.0 18,642 + +0.6 18,643 - -0.1 18,647 + +0.5 18,710 + -1.7 18,732 + -0.5 18,759 - +0.2 18,823 + -0.1 18,825 + -0.1 18,825 + -1.7 18,826 - +0.4 18,863 + +0.2 18,863 + +1.7 18,863 + -0.3 18,863 + -0.9 18,864 - -0.0 18,900 + +0.0 18,900 + -0.9 18,900 + +0.6 18,900 + +0.0 18,901 - +0.1 18,901 - +0.4 18,912 + -0.5 18,913 - +0.3 18,955 - CA264_20785 0.21 +0.1 18,973 + CA264_20785 0.26 +1.0 18,974 - CA264_20785 0.26 +0.2 19,051 + CA264_20785 0.49 +0.1 19,051 + CA264_20785 0.49 -0.1 19,162 + CA264_20785 0.80 +0.7 19,163 - CA264_20785 0.81 -0.6 19,164 + CA264_20785 0.81 +0.5 19,165 - CA264_20785 0.81 -0.6 19,165 - CA264_20785 0.81 +0.1 19,166 + CA264_20785 0.82 -0.1 19,166 + CA264_20785 0.82 -0.2 19,218 - +0.0 19,241 + +0.4 19,246 + +1.3 19,246 + +1.1 19,247 - -1.1 19,247 - +0.5 19,247 - +1.1 19,282 + +0.5 19,283 - +0.7 19,421 + CA264_20790 0.14 -0.8 19,421 + CA264_20790 0.14 +1.8 19,422 - CA264_20790 0.14 +0.6 19,441 + CA264_20790 0.16 +1.1 19,475 + CA264_20790 0.19 +0.5 19,475 + CA264_20790 0.19 +0.0 19,476 - CA264_20790 0.19 +0.1 19,476 - CA264_20790 0.19 +1.0 19,519 + CA264_20790 0.23 -0.3
Or see this region's nucleotide sequence