Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20570

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20565 and CA264_20570 are separated by 217 nucleotidesCA264_20570 and CA264_20575 are separated by 172 nucleotidesCA264_20575 and CA264_20580 are separated by 168 nucleotides CA264_20565: CA264_20565 - hypothetical protein, at 4,736,938 to 4,737,888 _20565 CA264_20570: CA264_20570 - inorganic pyrophosphatase, at 4,738,106 to 4,738,690 _20570 CA264_20575: CA264_20575 - 50S ribosomal protein L19, at 4,738,863 to 4,739,216 _20575 CA264_20580: CA264_20580 - tRNA (guanine(37)-N(1))-methyltransferase, at 4,739,385 to 4,740,065 _20580 Position (kb) 4738 4739Strain fitness (log2 ratio) -2 -1 0 1 2at 4737.108 kb on + strand, within CA264_20565at 4737.108 kb on + strand, within CA264_20565at 4737.109 kb on - strand, within CA264_20565at 4737.109 kb on - strand, within CA264_20565at 4737.128 kb on + strand, within CA264_20565at 4737.179 kb on + strand, within CA264_20565at 4737.180 kb on - strand, within CA264_20565at 4737.180 kb on - strand, within CA264_20565at 4737.197 kb on - strand, within CA264_20565at 4737.199 kb on + strand, within CA264_20565at 4737.218 kb on - strand, within CA264_20565at 4737.265 kb on + strand, within CA264_20565at 4737.265 kb on + strand, within CA264_20565at 4737.265 kb on + strand, within CA264_20565at 4737.289 kb on - strand, within CA264_20565at 4737.296 kb on - strand, within CA264_20565at 4737.409 kb on - strand, within CA264_20565at 4737.409 kb on - strand, within CA264_20565at 4737.440 kb on - strand, within CA264_20565at 4737.440 kb on - strand, within CA264_20565at 4737.467 kb on - strand, within CA264_20565at 4737.480 kb on - strand, within CA264_20565at 4737.511 kb on + strand, within CA264_20565at 4737.548 kb on + strand, within CA264_20565at 4737.574 kb on - strand, within CA264_20565at 4737.588 kb on - strand, within CA264_20565at 4737.631 kb on - strand, within CA264_20565at 4737.631 kb on - strand, within CA264_20565at 4737.637 kb on - strand, within CA264_20565at 4737.654 kb on - strand, within CA264_20565at 4737.833 kb on - strandat 4737.866 kb on - strandat 4737.874 kb on - strandat 4737.874 kb on - strandat 4737.874 kb on - strandat 4737.874 kb on - strandat 4737.920 kb on + strandat 4737.924 kb on + strandat 4737.924 kb on + strandat 4737.924 kb on + strandat 4737.925 kb on - strandat 4737.946 kb on - strandat 4737.946 kb on - strandat 4737.947 kb on + strandat 4737.948 kb on - strandat 4737.954 kb on + strandat 4737.978 kb on + strandat 4737.989 kb on - strandat 4737.993 kb on + strandat 4738.001 kb on + strandat 4738.001 kb on + strandat 4738.001 kb on + strandat 4738.002 kb on - strandat 4738.002 kb on - strandat 4738.045 kb on + strandat 4738.108 kb on - strandat 4738.128 kb on - strandat 4738.468 kb on - strand, within CA264_20570at 4738.540 kb on - strand, within CA264_20570at 4738.606 kb on - strand, within CA264_20570at 4738.606 kb on - strand, within CA264_20570at 4738.700 kb on - strandat 4738.762 kb on - strandat 4739.386 kb on + strandat 4739.527 kb on + strand, within CA264_20580at 4739.528 kb on - strand, within CA264_20580at 4739.663 kb on - strand, within CA264_20580

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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4,737,108 + CA264_20565 0.18 -0.7
4,737,108 + CA264_20565 0.18 -1.0
4,737,109 - CA264_20565 0.18 -0.2
4,737,109 - CA264_20565 0.18 -0.6
4,737,128 + CA264_20565 0.20 +0.5
4,737,179 + CA264_20565 0.25 +0.2
4,737,180 - CA264_20565 0.25 +0.6
4,737,180 - CA264_20565 0.25 -0.4
4,737,197 - CA264_20565 0.27 -1.0
4,737,199 + CA264_20565 0.27 -0.4
4,737,218 - CA264_20565 0.29 -0.5
4,737,265 + CA264_20565 0.34 +1.0
4,737,265 + CA264_20565 0.34 +0.0
4,737,265 + CA264_20565 0.34 -0.6
4,737,289 - CA264_20565 0.37 +2.0
4,737,296 - CA264_20565 0.38 -0.0
4,737,409 - CA264_20565 0.50 +0.4
4,737,409 - CA264_20565 0.50 +0.1
4,737,440 - CA264_20565 0.53 -1.8
4,737,440 - CA264_20565 0.53 -1.6
4,737,467 - CA264_20565 0.56 +0.8
4,737,480 - CA264_20565 0.57 +1.1
4,737,511 + CA264_20565 0.60 +0.5
4,737,548 + CA264_20565 0.64 +0.0
4,737,574 - CA264_20565 0.67 -0.5
4,737,588 - CA264_20565 0.68 +0.4
4,737,631 - CA264_20565 0.73 -0.7
4,737,631 - CA264_20565 0.73 -1.4
4,737,637 - CA264_20565 0.74 +1.0
4,737,654 - CA264_20565 0.75 +1.1
4,737,833 - -0.6
4,737,866 - -0.6
4,737,874 - +0.7
4,737,874 - +1.8
4,737,874 - -0.2
4,737,874 - -0.8
4,737,920 + -0.1
4,737,924 + -1.0
4,737,924 + -0.5
4,737,924 + +1.6
4,737,925 - -1.2
4,737,946 - +0.1
4,737,946 - +0.4
4,737,947 + +0.4
4,737,948 - -0.6
4,737,954 + -0.1
4,737,978 + -0.8
4,737,989 - +0.2
4,737,993 + -0.0
4,738,001 + -0.6
4,738,001 + -0.8
4,738,001 + -1.4
4,738,002 - +0.1
4,738,002 - -1.0
4,738,045 + -0.2
4,738,108 - +0.3
4,738,128 - -2.3
4,738,468 - CA264_20570 0.62 -1.0
4,738,540 - CA264_20570 0.74 -1.0
4,738,606 - CA264_20570 0.85 -0.6
4,738,606 - CA264_20570 0.85 -1.6
4,738,700 - -0.1
4,738,762 - -0.1
4,739,386 + -0.5
4,739,527 + CA264_20580 0.21 -0.6
4,739,528 - CA264_20580 0.21 -0.8
4,739,663 - CA264_20580 0.41 -0.8

Or see this region's nucleotide sequence