Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19510

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19505 and CA264_19510 are separated by 97 nucleotidesCA264_19510 and CA264_19515 are separated by 6 nucleotides CA264_19505: CA264_19505 - Fe-S protein assembly chaperone HscA, at 4,505,986 to 4,507,851 _19505 CA264_19510: CA264_19510 - hypothetical protein, at 4,507,949 to 4,508,299 _19510 CA264_19515: CA264_19515 - malate dehydrogenase, at 4,508,306 to 4,509,373 _19515 Position (kb) 4507 4508 4509Strain fitness (log2 ratio) -1 0 1at 4507.881 kb on + strandat 4507.891 kb on - strandat 4507.893 kb on - strandat 4507.911 kb on - strandat 4507.911 kb on - strandat 4507.913 kb on + strandat 4507.913 kb on + strandat 4507.914 kb on - strandat 4507.914 kb on - strandat 4507.914 kb on - strandat 4507.936 kb on + strandat 4507.941 kb on - strandat 4507.941 kb on - strandat 4507.941 kb on - strandat 4507.987 kb on + strand, within CA264_19510at 4507.999 kb on - strand, within CA264_19510at 4508.008 kb on + strand, within CA264_19510at 4508.008 kb on + strand, within CA264_19510at 4508.063 kb on + strand, within CA264_19510at 4508.083 kb on - strand, within CA264_19510at 4508.088 kb on + strand, within CA264_19510at 4508.089 kb on - strand, within CA264_19510at 4508.112 kb on + strand, within CA264_19510at 4508.207 kb on + strand, within CA264_19510at 4508.208 kb on - strand, within CA264_19510at 4508.210 kb on + strand, within CA264_19510at 4508.252 kb on + strand, within CA264_19510at 4508.252 kb on + strand, within CA264_19510at 4508.252 kb on + strand, within CA264_19510at 4508.253 kb on - strand, within CA264_19510at 4508.253 kb on - strand, within CA264_19510

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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4,507,881 + -0.3
4,507,891 - +0.8
4,507,893 - -0.5
4,507,911 - -0.2
4,507,911 - +0.2
4,507,913 + +0.8
4,507,913 + -0.1
4,507,914 - -0.2
4,507,914 - -1.3
4,507,914 - +0.2
4,507,936 + -1.0
4,507,941 - -1.7
4,507,941 - -0.6
4,507,941 - -0.9
4,507,987 + CA264_19510 0.11 -0.2
4,507,999 - CA264_19510 0.14 -0.1
4,508,008 + CA264_19510 0.17 -0.7
4,508,008 + CA264_19510 0.17 +0.1
4,508,063 + CA264_19510 0.32 -0.1
4,508,083 - CA264_19510 0.38 -0.3
4,508,088 + CA264_19510 0.40 -0.6
4,508,089 - CA264_19510 0.40 -0.2
4,508,112 + CA264_19510 0.46 -0.8
4,508,207 + CA264_19510 0.74 +0.5
4,508,208 - CA264_19510 0.74 +0.1
4,508,210 + CA264_19510 0.74 -1.2
4,508,252 + CA264_19510 0.86 -0.6
4,508,252 + CA264_19510 0.86 -0.3
4,508,252 + CA264_19510 0.86 -0.1
4,508,253 - CA264_19510 0.87 +1.3
4,508,253 - CA264_19510 0.87 -0.4

Or see this region's nucleotide sequence