Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19070

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19060 and CA264_19065 are separated by 6 nucleotidesCA264_19065 and CA264_19070 are separated by 160 nucleotidesCA264_19070 and CA264_19075 are separated by 4 nucleotidesCA264_19075 and CA264_19080 overlap by 65 nucleotides CA264_19060: CA264_19060 - hypothetical protein, at 4,429,689 to 4,431,086 _19060 CA264_19065: CA264_19065 - phosphosulfolactate synthase, at 4,431,093 to 4,431,866 _19065 CA264_19070: CA264_19070 - DUF368 domain-containing protein, at 4,432,027 to 4,432,926 _19070 CA264_19075: CA264_19075 - shikimate dehydrogenase, at 4,432,931 to 4,433,671 _19075 CA264_19080: CA264_19080 - hypothetical protein, at 4,433,607 to 4,434,173 _19080 Position (kb) 4432 4433Strain fitness (log2 ratio) -2 -1 0 1at 4431.896 kb on - strandat 4431.896 kb on - strandat 4431.963 kb on - strandat 4432.923 kb on - strandat 4432.930 kb on + strandat 4432.930 kb on + strandat 4432.931 kb on - strandat 4433.700 kb on + strand, within CA264_19080at 4433.729 kb on + strand, within CA264_19080at 4433.729 kb on + strand, within CA264_19080at 4433.730 kb on - strand, within CA264_19080at 4433.737 kb on + strand, within CA264_19080at 4433.752 kb on - strand, within CA264_19080at 4433.752 kb on - strand, within CA264_19080at 4433.752 kb on - strand, within CA264_19080at 4433.788 kb on + strand, within CA264_19080at 4433.788 kb on + strand, within CA264_19080at 4433.789 kb on - strand, within CA264_19080at 4433.795 kb on + strand, within CA264_19080at 4433.832 kb on + strand, within CA264_19080at 4433.833 kb on - strand, within CA264_19080at 4433.841 kb on + strand, within CA264_19080

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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4,431,896 - -0.2
4,431,896 - -0.1
4,431,963 - +1.2
4,432,923 - -2.0
4,432,930 + -0.0
4,432,930 + -1.2
4,432,931 - +0.9
4,433,700 + CA264_19080 0.16 -0.6
4,433,729 + CA264_19080 0.22 -0.5
4,433,729 + CA264_19080 0.22 -0.5
4,433,730 - CA264_19080 0.22 +0.1
4,433,737 + CA264_19080 0.23 -0.1
4,433,752 - CA264_19080 0.26 -1.3
4,433,752 - CA264_19080 0.26 -0.4
4,433,752 - CA264_19080 0.26 -0.4
4,433,788 + CA264_19080 0.32 -0.4
4,433,788 + CA264_19080 0.32 -0.3
4,433,789 - CA264_19080 0.32 +1.4
4,433,795 + CA264_19080 0.33 +0.1
4,433,832 + CA264_19080 0.40 -0.6
4,433,833 - CA264_19080 0.40 -0.0
4,433,841 + CA264_19080 0.41 -1.3

Or see this region's nucleotide sequence