Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15205 and CA264_15210 are separated by 76 nucleotides CA264_15210 and CA264_15215 are separated by 29 nucleotides CA264_15215 and CA264_15220 are separated by 17 nucleotides
CA264_15205: CA264_15205 - RNA pseudouridine synthase, at 3,562,298 to 3,563,332
_15205
CA264_15210: CA264_15210 - outer membrane chaperone Skp, at 3,563,409 to 3,564,017
_15210
CA264_15215: CA264_15215 - hypothetical protein, at 3,564,047 to 3,564,712
_15215
CA264_15220: CA264_15220 - outer membrane protein assembly factor BamA, at 3,564,730 to 3,567,228
_15220
Position (kb)
3564
3565 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3563.121 kb on - strand, within CA264_15205 at 3563.186 kb on + strand, within CA264_15205 at 3563.186 kb on + strand, within CA264_15205 at 3563.187 kb on - strand, within CA264_15205 at 3563.372 kb on + strand at 3563.411 kb on - strand at 3563.411 kb on - strand at 3564.030 kb on + strand at 3564.031 kb on - strand at 3564.034 kb on - strand at 3564.036 kb on + strand at 3564.036 kb on + strand at 3564.037 kb on - strand at 3564.038 kb on + strand at 3564.039 kb on - strand at 3564.040 kb on + strand at 3564.187 kb on + strand, within CA264_15215 at 3564.258 kb on + strand, within CA264_15215 at 3564.286 kb on - strand, within CA264_15215 at 3564.326 kb on + strand, within CA264_15215 at 3564.339 kb on - strand, within CA264_15215 at 3564.396 kb on + strand, within CA264_15215 at 3564.418 kb on - strand, within CA264_15215 at 3564.570 kb on + strand, within CA264_15215 at 3564.600 kb on + strand, within CA264_15215 at 3564.614 kb on - strand, within CA264_15215 at 3564.614 kb on - strand, within CA264_15215 at 3564.614 kb on - strand, within CA264_15215 at 3564.715 kb on + strand at 3564.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 3,563,121 - CA264_15205 0.80 +0.6 3,563,186 + CA264_15205 0.86 -0.6 3,563,186 + CA264_15205 0.86 -0.0 3,563,187 - CA264_15205 0.86 +2.0 3,563,372 + -0.0 3,563,411 - -0.0 3,563,411 - +0.1 3,564,030 + -0.6 3,564,031 - +1.0 3,564,034 - -0.2 3,564,036 + -0.0 3,564,036 + -0.6 3,564,037 - -0.1 3,564,038 + -0.0 3,564,039 - -0.1 3,564,040 + -0.6 3,564,187 + CA264_15215 0.21 -1.4 3,564,258 + CA264_15215 0.32 -1.6 3,564,286 - CA264_15215 0.36 -1.1 3,564,326 + CA264_15215 0.42 -1.3 3,564,339 - CA264_15215 0.44 -2.5 3,564,396 + CA264_15215 0.52 -1.6 3,564,418 - CA264_15215 0.56 -1.8 3,564,570 + CA264_15215 0.79 -1.7 3,564,600 + CA264_15215 0.83 -0.6 3,564,614 - CA264_15215 0.85 -1.4 3,564,614 - CA264_15215 0.85 -0.0 3,564,614 - CA264_15215 0.85 -0.9 3,564,715 + -1.9 3,564,732 - -0.2
Or see this region's nucleotide sequence