Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15195

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15185 and CA264_15190 are separated by 121 nucleotidesCA264_15190 and CA264_15195 overlap by 11 nucleotidesCA264_15195 and CA264_15200 are separated by 45 nucleotides CA264_15185: CA264_15185 - hypothetical protein, at 3,558,358 to 3,559,194 _15185 CA264_15190: CA264_15190 - hypothetical protein, at 3,559,316 to 3,559,573 _15190 CA264_15195: CA264_15195 - phosphate ABC transporter substrate-binding protein, PhoT family, at 3,559,563 to 3,560,504 _15195 CA264_15200: CA264_15200 - hypothetical protein, at 3,560,550 to 3,562,193 _15200 Position (kb) 3559 3560 3561Strain fitness (log2 ratio) -2 -1 0 1at 3558.571 kb on + strand, within CA264_15185at 3558.571 kb on + strand, within CA264_15185at 3558.571 kb on + strand, within CA264_15185at 3558.571 kb on + strand, within CA264_15185at 3558.572 kb on - strand, within CA264_15185at 3558.572 kb on - strand, within CA264_15185at 3558.590 kb on - strand, within CA264_15185at 3558.606 kb on + strand, within CA264_15185at 3558.892 kb on + strand, within CA264_15185at 3558.892 kb on + strand, within CA264_15185at 3558.892 kb on + strand, within CA264_15185at 3558.893 kb on - strand, within CA264_15185at 3559.198 kb on + strandat 3559.198 kb on + strandat 3559.321 kb on + strandat 3559.322 kb on - strandat 3559.322 kb on - strandat 3559.461 kb on + strand, within CA264_15190at 3559.478 kb on + strand, within CA264_15190at 3559.479 kb on - strand, within CA264_15190at 3559.500 kb on + strand, within CA264_15190at 3559.505 kb on + strand, within CA264_15190at 3559.506 kb on - strand, within CA264_15190at 3559.533 kb on - strand, within CA264_15190at 3559.533 kb on - strand, within CA264_15190at 3559.562 kb on + strandat 3559.563 kb on - strandat 3559.613 kb on - strandat 3559.735 kb on - strand, within CA264_15195at 3559.916 kb on + strand, within CA264_15195at 3560.102 kb on + strand, within CA264_15195at 3560.102 kb on + strand, within CA264_15195at 3560.103 kb on - strand, within CA264_15195at 3560.103 kb on - strand, within CA264_15195at 3560.103 kb on - strand, within CA264_15195at 3560.103 kb on - strand, within CA264_15195at 3560.129 kb on + strand, within CA264_15195at 3560.154 kb on + strand, within CA264_15195at 3560.155 kb on - strand, within CA264_15195at 3560.320 kb on - strand, within CA264_15195at 3560.358 kb on + strand, within CA264_15195at 3560.359 kb on - strand, within CA264_15195at 3560.409 kb on + strand, within CA264_15195at 3560.410 kb on - strandat 3560.508 kb on + strandat 3560.515 kb on + strandat 3560.568 kb on + strandat 3560.676 kb on - strandat 3560.679 kb on + strandat 3560.679 kb on + strandat 3560.680 kb on - strandat 3560.680 kb on - strandat 3560.682 kb on - strandat 3560.697 kb on - strandat 3560.739 kb on - strand, within CA264_15200at 3560.926 kb on + strand, within CA264_15200at 3560.949 kb on + strand, within CA264_15200at 3561.050 kb on - strand, within CA264_15200at 3561.135 kb on + strand, within CA264_15200at 3561.147 kb on + strand, within CA264_15200at 3561.169 kb on - strand, within CA264_15200at 3561.270 kb on + strand, within CA264_15200at 3561.271 kb on - strand, within CA264_15200at 3561.274 kb on - strand, within CA264_15200at 3561.323 kb on - strand, within CA264_15200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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3,558,571 + CA264_15185 0.25 +0.2
3,558,571 + CA264_15185 0.25 -0.9
3,558,571 + CA264_15185 0.25 -0.7
3,558,571 + CA264_15185 0.25 -0.6
3,558,572 - CA264_15185 0.26 -0.5
3,558,572 - CA264_15185 0.26 -1.3
3,558,590 - CA264_15185 0.28 +0.0
3,558,606 + CA264_15185 0.30 -0.0
3,558,892 + CA264_15185 0.64 +1.6
3,558,892 + CA264_15185 0.64 +0.4
3,558,892 + CA264_15185 0.64 -0.0
3,558,893 - CA264_15185 0.64 -1.3
3,559,198 + -0.8
3,559,198 + +0.4
3,559,321 + +0.6
3,559,322 - -0.3
3,559,322 - +1.0
3,559,461 + CA264_15190 0.56 +0.0
3,559,478 + CA264_15190 0.63 +0.4
3,559,479 - CA264_15190 0.63 +0.1
3,559,500 + CA264_15190 0.71 -1.6
3,559,505 + CA264_15190 0.73 -0.6
3,559,506 - CA264_15190 0.74 -0.1
3,559,533 - CA264_15190 0.84 +0.7
3,559,533 - CA264_15190 0.84 -1.8
3,559,562 + +0.5
3,559,563 - +0.1
3,559,613 - -0.2
3,559,735 - CA264_15195 0.18 +0.1
3,559,916 + CA264_15195 0.37 -1.8
3,560,102 + CA264_15195 0.57 -0.4
3,560,102 + CA264_15195 0.57 -0.4
3,560,103 - CA264_15195 0.57 +1.0
3,560,103 - CA264_15195 0.57 +1.0
3,560,103 - CA264_15195 0.57 -1.0
3,560,103 - CA264_15195 0.57 -0.6
3,560,129 + CA264_15195 0.60 -0.4
3,560,154 + CA264_15195 0.63 -0.0
3,560,155 - CA264_15195 0.63 +0.2
3,560,320 - CA264_15195 0.80 -1.6
3,560,358 + CA264_15195 0.84 +0.6
3,560,359 - CA264_15195 0.85 -0.3
3,560,409 + CA264_15195 0.90 -0.0
3,560,410 - -0.6
3,560,508 + +0.3
3,560,515 + -0.5
3,560,568 + -1.6
3,560,676 - -0.3
3,560,679 + -0.5
3,560,679 + +0.0
3,560,680 - +0.4
3,560,680 - -0.9
3,560,682 - -0.0
3,560,697 - -0.9
3,560,739 - CA264_15200 0.11 -0.4
3,560,926 + CA264_15200 0.23 +0.1
3,560,949 + CA264_15200 0.24 +1.0
3,561,050 - CA264_15200 0.30 -0.4
3,561,135 + CA264_15200 0.36 -0.8
3,561,147 + CA264_15200 0.36 -2.2
3,561,169 - CA264_15200 0.38 -0.8
3,561,270 + CA264_15200 0.44 -0.4
3,561,271 - CA264_15200 0.44 -0.8
3,561,274 - CA264_15200 0.44 +0.3
3,561,323 - CA264_15200 0.47 -1.4

Or see this region's nucleotide sequence