Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13600 and CA264_13605 are separated by 311 nucleotides CA264_13605 and CA264_13610 are separated by 78 nucleotides
CA264_13600: CA264_13600 - SusC/RagA family TonB-linked outer membrane protein, at 3,177,137 to 3,180,277
_13600
CA264_13605: CA264_13605 - hypothetical protein, at 3,180,589 to 3,181,413
_13605
CA264_13610: CA264_13610 - sodium:proton antiporter, at 3,181,492 to 3,182,739
_13610
Position (kb)
3180
3181
3182 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3179.708 kb on + strand, within CA264_13600 at 3179.772 kb on - strand, within CA264_13600 at 3179.775 kb on - strand, within CA264_13600 at 3179.775 kb on - strand, within CA264_13600 at 3179.775 kb on - strand, within CA264_13600 at 3179.852 kb on + strand, within CA264_13600 at 3179.936 kb on - strand, within CA264_13600 at 3179.999 kb on + strand at 3180.000 kb on - strand at 3180.005 kb on - strand at 3180.088 kb on + strand at 3180.088 kb on + strand at 3180.088 kb on + strand at 3180.093 kb on + strand at 3180.094 kb on - strand at 3180.094 kb on - strand at 3180.122 kb on + strand at 3180.122 kb on + strand at 3180.122 kb on + strand at 3180.122 kb on + strand at 3180.123 kb on - strand at 3180.138 kb on - strand at 3180.185 kb on + strand at 3180.237 kb on - strand at 3180.263 kb on + strand at 3180.290 kb on - strand at 3180.690 kb on + strand, within CA264_13605 at 3180.690 kb on + strand, within CA264_13605 at 3180.865 kb on + strand, within CA264_13605 at 3180.865 kb on + strand, within CA264_13605 at 3180.865 kb on + strand, within CA264_13605 at 3180.866 kb on - strand, within CA264_13605 at 3180.866 kb on - strand, within CA264_13605 at 3180.873 kb on + strand, within CA264_13605 at 3181.059 kb on - strand, within CA264_13605 at 3181.078 kb on + strand, within CA264_13605 at 3181.078 kb on + strand, within CA264_13605 at 3181.109 kb on - strand, within CA264_13605 at 3181.149 kb on - strand, within CA264_13605 at 3181.153 kb on + strand, within CA264_13605 at 3181.238 kb on - strand, within CA264_13605 at 3181.239 kb on + strand, within CA264_13605 at 3181.288 kb on - strand, within CA264_13605 at 3181.293 kb on + strand, within CA264_13605 at 3181.412 kb on - strand at 3181.463 kb on + strand at 3181.539 kb on + strand at 3181.539 kb on + strand at 3181.571 kb on - strand at 3181.571 kb on - strand at 3181.604 kb on + strand at 3181.604 kb on + strand at 3181.638 kb on + strand, within CA264_13610 at 3181.674 kb on + strand, within CA264_13610 at 3181.674 kb on + strand, within CA264_13610 at 3181.674 kb on + strand, within CA264_13610 at 3181.675 kb on - strand, within CA264_13610 at 3181.719 kb on - strand, within CA264_13610 at 3181.739 kb on - strand, within CA264_13610 at 3181.742 kb on + strand, within CA264_13610 at 3181.743 kb on - strand, within CA264_13610 at 3181.753 kb on + strand, within CA264_13610 at 3181.754 kb on - strand, within CA264_13610 at 3181.771 kb on - strand, within CA264_13610 at 3181.771 kb on - strand, within CA264_13610 at 3181.771 kb on - strand, within CA264_13610 at 3181.790 kb on + strand, within CA264_13610 at 3181.790 kb on + strand, within CA264_13610 at 3181.791 kb on - strand, within CA264_13610 at 3181.801 kb on - strand, within CA264_13610 at 3181.890 kb on - strand, within CA264_13610 at 3181.939 kb on - strand, within CA264_13610 at 3182.053 kb on + strand, within CA264_13610 at 3182.053 kb on + strand, within CA264_13610 at 3182.196 kb on + strand, within CA264_13610 at 3182.196 kb on + strand, within CA264_13610 at 3182.310 kb on + strand, within CA264_13610 at 3182.320 kb on - strand, within CA264_13610 at 3182.342 kb on + strand, within CA264_13610 at 3182.342 kb on + strand, within CA264_13610 at 3182.342 kb on + strand, within CA264_13610 at 3182.342 kb on + strand, within CA264_13610 at 3182.360 kb on + strand, within CA264_13610 at 3182.382 kb on - strand, within CA264_13610 at 3182.384 kb on + strand, within CA264_13610 at 3182.410 kb on - strand, within CA264_13610
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 3,179,708 + CA264_13600 0.82 -1.0 3,179,772 - CA264_13600 0.84 +1.5 3,179,775 - CA264_13600 0.84 -0.7 3,179,775 - CA264_13600 0.84 -1.0 3,179,775 - CA264_13600 0.84 -1.4 3,179,852 + CA264_13600 0.86 +0.6 3,179,936 - CA264_13600 0.89 +0.9 3,179,999 + -2.4 3,180,000 - -0.3 3,180,005 - +0.9 3,180,088 + -0.8 3,180,088 + +0.0 3,180,088 + +1.5 3,180,093 + -0.7 3,180,094 - +0.2 3,180,094 - +0.3 3,180,122 + -0.4 3,180,122 + +0.9 3,180,122 + +3.2 3,180,122 + +0.2 3,180,123 - -0.0 3,180,138 - +0.1 3,180,185 + +0.1 3,180,237 - -1.6 3,180,263 + -0.3 3,180,290 - +0.9 3,180,690 + CA264_13605 0.12 +1.9 3,180,690 + CA264_13605 0.12 +0.4 3,180,865 + CA264_13605 0.33 -0.9 3,180,865 + CA264_13605 0.33 +0.2 3,180,865 + CA264_13605 0.33 +0.6 3,180,866 - CA264_13605 0.34 -0.7 3,180,866 - CA264_13605 0.34 +0.1 3,180,873 + CA264_13605 0.34 +1.9 3,181,059 - CA264_13605 0.57 -0.4 3,181,078 + CA264_13605 0.59 +0.9 3,181,078 + CA264_13605 0.59 +0.9 3,181,109 - CA264_13605 0.63 +1.6 3,181,149 - CA264_13605 0.68 +1.5 3,181,153 + CA264_13605 0.68 +0.5 3,181,238 - CA264_13605 0.79 +0.3 3,181,239 + CA264_13605 0.79 +0.0 3,181,288 - CA264_13605 0.85 -0.2 3,181,293 + CA264_13605 0.85 -0.2 3,181,412 - -1.1 3,181,463 + -0.4 3,181,539 + -0.7 3,181,539 + +1.5 3,181,571 - -0.6 3,181,571 - -0.1 3,181,604 + +0.7 3,181,604 + -0.0 3,181,638 + CA264_13610 0.12 +0.3 3,181,674 + CA264_13610 0.15 -1.0 3,181,674 + CA264_13610 0.15 +0.3 3,181,674 + CA264_13610 0.15 -0.1 3,181,675 - CA264_13610 0.15 +0.1 3,181,719 - CA264_13610 0.18 +0.3 3,181,739 - CA264_13610 0.20 +0.0 3,181,742 + CA264_13610 0.20 +1.5 3,181,743 - CA264_13610 0.20 -0.8 3,181,753 + CA264_13610 0.21 -1.1 3,181,754 - CA264_13610 0.21 -0.4 3,181,771 - CA264_13610 0.22 -0.1 3,181,771 - CA264_13610 0.22 -0.1 3,181,771 - CA264_13610 0.22 +2.5 3,181,790 + CA264_13610 0.24 +0.5 3,181,790 + CA264_13610 0.24 -0.1 3,181,791 - CA264_13610 0.24 -0.3 3,181,801 - CA264_13610 0.25 -0.1 3,181,890 - CA264_13610 0.32 -0.3 3,181,939 - CA264_13610 0.36 +0.6 3,182,053 + CA264_13610 0.45 +0.2 3,182,053 + CA264_13610 0.45 -0.5 3,182,196 + CA264_13610 0.56 +1.5 3,182,196 + CA264_13610 0.56 +0.1 3,182,310 + CA264_13610 0.66 +1.0 3,182,320 - CA264_13610 0.66 -0.3 3,182,342 + CA264_13610 0.68 -0.3 3,182,342 + CA264_13610 0.68 +0.9 3,182,342 + CA264_13610 0.68 +0.4 3,182,342 + CA264_13610 0.68 -0.5 3,182,360 + CA264_13610 0.70 -1.6 3,182,382 - CA264_13610 0.71 +0.1 3,182,384 + CA264_13610 0.71 +0.6 3,182,410 - CA264_13610 0.74 -0.7
Or see this region's nucleotide sequence