Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07905

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07895 and CA264_07900 are separated by 372 nucleotidesCA264_07900 and CA264_07905 are separated by 155 nucleotidesCA264_07905 and CA264_07910 are separated by 127 nucleotides CA264_07895: CA264_07895 - hypothetical protein, at 1,826,722 to 1,827,294 _07895 CA264_07900: CA264_07900 - hypothetical protein, at 1,827,667 to 1,828,047 _07900 CA264_07905: CA264_07905 - tRNA-specific adenosine deaminase, at 1,828,203 to 1,828,688 _07905 CA264_07910: CA264_07910 - HAMP domain-containing histidine kinase, at 1,828,816 to 1,830,330 _07910 Position (kb) 1828 1829Strain fitness (log2 ratio) -2 -1 0 1 2at 1827.295 kb on + strandat 1827.295 kb on + strandat 1827.330 kb on + strandat 1827.331 kb on - strandat 1827.350 kb on + strandat 1827.363 kb on - strandat 1827.389 kb on - strandat 1827.422 kb on - strandat 1827.448 kb on - strandat 1827.480 kb on + strandat 1827.503 kb on + strandat 1827.513 kb on - strandat 1827.529 kb on - strandat 1827.546 kb on + strandat 1827.546 kb on + strandat 1827.547 kb on - strandat 1827.552 kb on + strandat 1827.553 kb on - strandat 1827.553 kb on - strandat 1827.557 kb on - strandat 1827.606 kb on - strandat 1827.647 kb on + strandat 1827.647 kb on + strandat 1827.647 kb on + strandat 1827.647 kb on + strandat 1827.648 kb on - strandat 1827.649 kb on + strandat 1827.650 kb on - strandat 1827.693 kb on - strandat 1827.693 kb on - strandat 1827.739 kb on - strand, within CA264_07900at 1827.772 kb on - strand, within CA264_07900at 1827.780 kb on + strand, within CA264_07900at 1827.780 kb on + strand, within CA264_07900at 1827.781 kb on - strand, within CA264_07900at 1827.781 kb on - strand, within CA264_07900at 1827.781 kb on - strand, within CA264_07900at 1827.781 kb on - strand, within CA264_07900at 1828.061 kb on - strandat 1828.128 kb on + strandat 1828.150 kb on + strandat 1828.155 kb on - strandat 1828.161 kb on + strandat 1828.306 kb on + strand, within CA264_07905at 1828.307 kb on - strand, within CA264_07905at 1828.328 kb on - strand, within CA264_07905at 1828.446 kb on + strand, within CA264_07905at 1828.447 kb on - strand, within CA264_07905at 1828.488 kb on + strand, within CA264_07905at 1828.488 kb on + strand, within CA264_07905at 1828.510 kb on + strand, within CA264_07905at 1828.510 kb on + strand, within CA264_07905at 1828.510 kb on + strand, within CA264_07905at 1828.511 kb on - strand, within CA264_07905at 1828.511 kb on - strand, within CA264_07905at 1828.511 kb on - strand, within CA264_07905at 1828.512 kb on + strand, within CA264_07905at 1828.512 kb on + strand, within CA264_07905at 1828.512 kb on + strand, within CA264_07905at 1828.513 kb on - strand, within CA264_07905at 1828.516 kb on - strand, within CA264_07905at 1828.566 kb on - strand, within CA264_07905at 1828.621 kb on + strand, within CA264_07905at 1828.708 kb on + strandat 1828.709 kb on - strandat 1828.734 kb on - strandat 1828.815 kb on + strandat 1828.815 kb on + strandat 1828.815 kb on + strandat 1828.838 kb on - strandat 1828.862 kb on + strandat 1828.891 kb on - strandat 1828.908 kb on - strandat 1828.908 kb on - strandat 1828.923 kb on + strandat 1828.949 kb on + strandat 1828.949 kb on + strandat 1829.050 kb on + strand, within CA264_07910at 1829.051 kb on - strand, within CA264_07910at 1829.069 kb on - strand, within CA264_07910at 1829.233 kb on + strand, within CA264_07910at 1829.249 kb on + strand, within CA264_07910at 1829.249 kb on + strand, within CA264_07910at 1829.250 kb on - strand, within CA264_07910at 1829.294 kb on + strand, within CA264_07910at 1829.306 kb on + strand, within CA264_07910at 1829.307 kb on - strand, within CA264_07910at 1829.332 kb on + strand, within CA264_07910at 1829.391 kb on - strand, within CA264_07910at 1829.391 kb on - strand, within CA264_07910at 1829.523 kb on + strand, within CA264_07910at 1829.615 kb on + strand, within CA264_07910at 1829.615 kb on + strand, within CA264_07910at 1829.616 kb on - strand, within CA264_07910at 1829.650 kb on + strand, within CA264_07910at 1829.650 kb on + strand, within CA264_07910at 1829.651 kb on - strand, within CA264_07910

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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1,827,295 + +0.0
1,827,295 + -0.8
1,827,330 + +0.1
1,827,331 - +1.2
1,827,350 + +0.9
1,827,363 - +0.2
1,827,389 - -0.5
1,827,422 - -0.7
1,827,448 - -0.4
1,827,480 + -1.3
1,827,503 + -0.1
1,827,513 - -0.8
1,827,529 - +1.2
1,827,546 + -0.2
1,827,546 + +0.1
1,827,547 - +0.2
1,827,552 + -1.3
1,827,553 - -0.1
1,827,553 - +0.3
1,827,557 - +1.3
1,827,606 - -0.3
1,827,647 + +1.1
1,827,647 + +0.4
1,827,647 + -0.4
1,827,647 + +0.4
1,827,648 - -0.7
1,827,649 + -0.4
1,827,650 - +0.2
1,827,693 - +0.2
1,827,693 - +0.7
1,827,739 - CA264_07900 0.19 +1.3
1,827,772 - CA264_07900 0.28 +0.6
1,827,780 + CA264_07900 0.30 -0.6
1,827,780 + CA264_07900 0.30 -1.1
1,827,781 - CA264_07900 0.30 -0.3
1,827,781 - CA264_07900 0.30 +1.7
1,827,781 - CA264_07900 0.30 -0.5
1,827,781 - CA264_07900 0.30 -1.1
1,828,061 - +0.1
1,828,128 + -0.6
1,828,150 + +0.2
1,828,155 - -1.6
1,828,161 + -0.5
1,828,306 + CA264_07905 0.21 +0.5
1,828,307 - CA264_07905 0.21 +2.3
1,828,328 - CA264_07905 0.26 +0.2
1,828,446 + CA264_07905 0.50 +0.1
1,828,447 - CA264_07905 0.50 -0.1
1,828,488 + CA264_07905 0.59 +2.7
1,828,488 + CA264_07905 0.59 -0.6
1,828,510 + CA264_07905 0.63 -0.1
1,828,510 + CA264_07905 0.63 +0.5
1,828,510 + CA264_07905 0.63 +0.7
1,828,511 - CA264_07905 0.63 -0.1
1,828,511 - CA264_07905 0.63 +1.1
1,828,511 - CA264_07905 0.63 -0.0
1,828,512 + CA264_07905 0.64 +0.3
1,828,512 + CA264_07905 0.64 -0.1
1,828,512 + CA264_07905 0.64 +0.5
1,828,513 - CA264_07905 0.64 +0.7
1,828,516 - CA264_07905 0.64 -0.0
1,828,566 - CA264_07905 0.75 -0.1
1,828,621 + CA264_07905 0.86 +2.2
1,828,708 + +0.2
1,828,709 - +0.0
1,828,734 - -0.3
1,828,815 + +2.7
1,828,815 + -0.3
1,828,815 + -0.1
1,828,838 - +0.1
1,828,862 + +0.0
1,828,891 - +0.9
1,828,908 - +0.2
1,828,908 - +0.1
1,828,923 + -0.0
1,828,949 + +0.2
1,828,949 + -0.3
1,829,050 + CA264_07910 0.15 -0.1
1,829,051 - CA264_07910 0.16 -0.5
1,829,069 - CA264_07910 0.17 +0.4
1,829,233 + CA264_07910 0.28 +0.0
1,829,249 + CA264_07910 0.29 -0.6
1,829,249 + CA264_07910 0.29 +2.4
1,829,250 - CA264_07910 0.29 -0.3
1,829,294 + CA264_07910 0.32 +0.0
1,829,306 + CA264_07910 0.32 +0.1
1,829,307 - CA264_07910 0.32 +0.7
1,829,332 + CA264_07910 0.34 +0.3
1,829,391 - CA264_07910 0.38 -1.8
1,829,391 - CA264_07910 0.38 +1.2
1,829,523 + CA264_07910 0.47 -0.1
1,829,615 + CA264_07910 0.53 -0.0
1,829,615 + CA264_07910 0.53 +0.3
1,829,616 - CA264_07910 0.53 -0.6
1,829,650 + CA264_07910 0.55 -0.3
1,829,650 + CA264_07910 0.55 -0.0
1,829,651 - CA264_07910 0.55 +0.5

Or see this region's nucleotide sequence