Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02515 and CA264_02520 are separated by 99 nucleotides CA264_02520 and CA264_02525 are separated by 24 nucleotides
CA264_02515: CA264_02515 - nitrite reductase, at 586,848 to 588,941
_02515
CA264_02520: CA264_02520 - uroporphyrinogen-III C-methyltransferase, at 589,041 to 589,877
_02520
CA264_02525: CA264_02525 - siroheme synthase, at 589,902 to 591,431
_02525
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 585.866 kb on + strand at 585.866 kb on + strand at 585.868 kb on + strand at 585.913 kb on - strand at 585.953 kb on - strand at 585.975 kb on + strand at 585.981 kb on + strand at 585.981 kb on + strand at 585.981 kb on + strand at 585.982 kb on - strand at 585.982 kb on - strand at 586.000 kb on - strand at 586.132 kb on - strand at 586.179 kb on + strand at 586.180 kb on - strand at 586.195 kb on - strand at 586.312 kb on + strand at 586.342 kb on + strand at 586.365 kb on - strand at 586.365 kb on - strand at 586.475 kb on + strand at 586.475 kb on + strand at 586.548 kb on - strand at 586.587 kb on - strand at 586.587 kb on - strand at 586.587 kb on - strand at 586.590 kb on - strand at 586.590 kb on - strand at 586.590 kb on - strand at 586.607 kb on + strand at 586.607 kb on + strand at 586.608 kb on - strand at 586.608 kb on - strand at 586.649 kb on + strand at 586.670 kb on + strand at 586.671 kb on - strand at 586.701 kb on - strand at 586.742 kb on - strand at 586.747 kb on + strand at 586.747 kb on + strand at 586.747 kb on + strand at 586.747 kb on + strand at 586.748 kb on - strand at 586.748 kb on - strand at 586.748 kb on - strand at 586.748 kb on - strand at 586.749 kb on + strand at 586.749 kb on + strand at 586.750 kb on - strand at 586.776 kb on - strand at 586.797 kb on + strand at 586.798 kb on - strand at 586.802 kb on + strand at 586.803 kb on - strand at 586.803 kb on - strand at 586.803 kb on - strand at 586.807 kb on + strand at 586.834 kb on + strand at 586.835 kb on - strand at 586.837 kb on - strand at 586.882 kb on + strand at 586.958 kb on + strand at 586.985 kb on - strand at 587.100 kb on - strand, within CA264_02515 at 587.195 kb on + strand, within CA264_02515 at 587.225 kb on - strand, within CA264_02515 at 587.225 kb on - strand, within CA264_02515 at 587.229 kb on - strand, within CA264_02515 at 587.234 kb on - strand, within CA264_02515 at 587.311 kb on - strand, within CA264_02515 at 587.349 kb on - strand, within CA264_02515 at 587.349 kb on - strand, within CA264_02515 at 587.354 kb on + strand, within CA264_02515 at 587.397 kb on + strand, within CA264_02515 at 587.397 kb on + strand, within CA264_02515 at 587.397 kb on + strand, within CA264_02515 at 587.398 kb on - strand, within CA264_02515 at 587.398 kb on - strand, within CA264_02515 at 587.398 kb on - strand, within CA264_02515 at 587.418 kb on - strand, within CA264_02515 at 587.540 kb on + strand, within CA264_02515 at 587.542 kb on + strand, within CA264_02515 at 587.621 kb on + strand, within CA264_02515 at 587.686 kb on + strand, within CA264_02515 at 587.686 kb on + strand, within CA264_02515 at 587.687 kb on - strand, within CA264_02515 at 587.687 kb on - strand, within CA264_02515 at 587.758 kb on + strand, within CA264_02515 at 587.777 kb on + strand, within CA264_02515 at 587.831 kb on + strand, within CA264_02515 at 587.835 kb on + strand, within CA264_02515 at 587.835 kb on + strand, within CA264_02515 at 587.835 kb on + strand, within CA264_02515 at 587.836 kb on - strand, within CA264_02515 at 587.836 kb on - strand, within CA264_02515 at 587.836 kb on - strand, within CA264_02515 at 587.870 kb on + strand, within CA264_02515 at 587.921 kb on - strand, within CA264_02515 at 587.927 kb on + strand, within CA264_02515 at 588.089 kb on + strand, within CA264_02515 at 588.093 kb on - strand, within CA264_02515 at 588.185 kb on + strand, within CA264_02515 at 588.185 kb on + strand, within CA264_02515 at 588.284 kb on - strand, within CA264_02515 at 588.318 kb on - strand, within CA264_02515 at 588.456 kb on + strand, within CA264_02515 at 588.464 kb on - strand, within CA264_02515 at 588.587 kb on - strand, within CA264_02515 at 588.590 kb on + strand, within CA264_02515 at 588.590 kb on + strand, within CA264_02515 at 588.590 kb on + strand, within CA264_02515 at 588.590 kb on + strand, within CA264_02515 at 588.591 kb on - strand, within CA264_02515 at 588.678 kb on + strand, within CA264_02515 at 588.875 kb on - strand at 588.972 kb on - strand at 588.996 kb on + strand at 588.997 kb on - strand at 589.063 kb on + strand at 589.070 kb on + strand at 589.070 kb on + strand at 589.107 kb on + strand at 589.107 kb on + strand at 589.109 kb on + strand at 589.133 kb on - strand, within CA264_02520 at 589.133 kb on - strand, within CA264_02520 at 589.237 kb on + strand, within CA264_02520 at 589.242 kb on + strand, within CA264_02520 at 589.267 kb on + strand, within CA264_02520 at 589.315 kb on + strand, within CA264_02520 at 589.469 kb on + strand, within CA264_02520 at 589.507 kb on + strand, within CA264_02520 at 589.507 kb on + strand, within CA264_02520 at 589.508 kb on - strand, within CA264_02520 at 589.538 kb on + strand, within CA264_02520 at 589.539 kb on - strand, within CA264_02520 at 589.577 kb on - strand, within CA264_02520 at 589.610 kb on - strand, within CA264_02520 at 589.610 kb on - strand, within CA264_02520 at 589.624 kb on + strand, within CA264_02520 at 589.629 kb on - strand, within CA264_02520 at 589.629 kb on - strand, within CA264_02520 at 589.676 kb on + strand, within CA264_02520 at 589.676 kb on + strand, within CA264_02520 at 589.677 kb on - strand, within CA264_02520 at 589.691 kb on - strand, within CA264_02520 at 589.742 kb on + strand, within CA264_02520 at 589.743 kb on - strand, within CA264_02520 at 589.746 kb on - strand, within CA264_02520 at 589.746 kb on - strand, within CA264_02520 at 589.749 kb on - strand, within CA264_02520 at 589.811 kb on + strand at 589.811 kb on + strand at 589.811 kb on + strand at 589.812 kb on - strand at 589.812 kb on - strand at 589.815 kb on + strand at 589.815 kb on + strand at 589.873 kb on + strand at 589.874 kb on - strand at 589.874 kb on - strand at 589.874 kb on - strand at 589.875 kb on + strand at 589.876 kb on - strand at 589.876 kb on - strand at 589.879 kb on + strand at 589.881 kb on + strand at 589.881 kb on + strand at 589.897 kb on + strand at 589.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 585,866 + +0.1 585,866 + +1.8 585,868 + +0.4 585,913 - -0.7 585,953 - +0.6 585,975 + +0.8 585,981 + +0.1 585,981 + +0.4 585,981 + -0.2 585,982 - +0.3 585,982 - -0.4 586,000 - -0.3 586,132 - -0.0 586,179 + +0.4 586,180 - +0.3 586,195 - -0.2 586,312 + +0.5 586,342 + +0.4 586,365 - -0.7 586,365 - -0.2 586,475 + +0.4 586,475 + +2.1 586,548 - -0.7 586,587 - +0.5 586,587 - +1.6 586,587 - -0.4 586,590 - -0.2 586,590 - -0.2 586,590 - +1.6 586,607 + +0.8 586,607 + -0.3 586,608 - +0.0 586,608 - +0.5 586,649 + +0.4 586,670 + -0.6 586,671 - -1.1 586,701 - +0.3 586,742 - +0.8 586,747 + -2.2 586,747 + +0.9 586,747 + +0.7 586,747 + +0.6 586,748 - -1.2 586,748 - -0.2 586,748 - +0.1 586,748 - -0.4 586,749 + +0.5 586,749 + +0.1 586,750 - +0.9 586,776 - +0.5 586,797 + +0.1 586,798 - +1.0 586,802 + -0.0 586,803 - -0.3 586,803 - +0.6 586,803 - -1.2 586,807 + +1.0 586,834 + +0.2 586,835 - +0.5 586,837 - +0.6 586,882 + +0.0 586,958 + -0.7 586,985 - -0.7 587,100 - CA264_02515 0.12 -1.3 587,195 + CA264_02515 0.17 -0.3 587,225 - CA264_02515 0.18 +1.6 587,225 - CA264_02515 0.18 +0.3 587,229 - CA264_02515 0.18 -1.5 587,234 - CA264_02515 0.18 -0.1 587,311 - CA264_02515 0.22 -0.7 587,349 - CA264_02515 0.24 -0.1 587,349 - CA264_02515 0.24 -0.0 587,354 + CA264_02515 0.24 -0.7 587,397 + CA264_02515 0.26 -1.3 587,397 + CA264_02515 0.26 -0.7 587,397 + CA264_02515 0.26 -0.6 587,398 - CA264_02515 0.26 -0.4 587,398 - CA264_02515 0.26 -0.7 587,398 - CA264_02515 0.26 -0.5 587,418 - CA264_02515 0.27 -1.7 587,540 + CA264_02515 0.33 +0.8 587,542 + CA264_02515 0.33 -0.5 587,621 + CA264_02515 0.37 -1.0 587,686 + CA264_02515 0.40 -0.6 587,686 + CA264_02515 0.40 -2.8 587,687 - CA264_02515 0.40 -0.8 587,687 - CA264_02515 0.40 -1.3 587,758 + CA264_02515 0.43 -0.2 587,777 + CA264_02515 0.44 -0.4 587,831 + CA264_02515 0.47 -0.2 587,835 + CA264_02515 0.47 +1.4 587,835 + CA264_02515 0.47 -0.7 587,835 + CA264_02515 0.47 -0.2 587,836 - CA264_02515 0.47 -2.3 587,836 - CA264_02515 0.47 -1.1 587,836 - CA264_02515 0.47 -1.8 587,870 + CA264_02515 0.49 -0.9 587,921 - CA264_02515 0.51 -2.2 587,927 + CA264_02515 0.52 -0.2 588,089 + CA264_02515 0.59 -1.2 588,093 - CA264_02515 0.59 -2.0 588,185 + CA264_02515 0.64 -1.8 588,185 + CA264_02515 0.64 +0.5 588,284 - CA264_02515 0.69 -0.3 588,318 - CA264_02515 0.70 +0.0 588,456 + CA264_02515 0.77 -0.9 588,464 - CA264_02515 0.77 -1.0 588,587 - CA264_02515 0.83 -2.2 588,590 + CA264_02515 0.83 -0.2 588,590 + CA264_02515 0.83 -1.4 588,590 + CA264_02515 0.83 -1.4 588,590 + CA264_02515 0.83 -0.4 588,591 - CA264_02515 0.83 -1.2 588,678 + CA264_02515 0.87 -1.3 588,875 - -0.2 588,972 - +0.0 588,996 + +0.8 588,997 - -0.7 589,063 + -2.8 589,070 + -0.3 589,070 + -1.4 589,107 + -1.5 589,107 + -1.2 589,109 + +0.8 589,133 - CA264_02520 0.11 -2.0 589,133 - CA264_02520 0.11 -0.3 589,237 + CA264_02520 0.23 -0.7 589,242 + CA264_02520 0.24 -1.3 589,267 + CA264_02520 0.27 -0.7 589,315 + CA264_02520 0.33 -1.5 589,469 + CA264_02520 0.51 +1.2 589,507 + CA264_02520 0.56 -0.2 589,507 + CA264_02520 0.56 +0.3 589,508 - CA264_02520 0.56 +0.5 589,538 + CA264_02520 0.59 -0.7 589,539 - CA264_02520 0.59 -1.2 589,577 - CA264_02520 0.64 -1.3 589,610 - CA264_02520 0.68 -1.3 589,610 - CA264_02520 0.68 -0.7 589,624 + CA264_02520 0.70 -0.2 589,629 - CA264_02520 0.70 -1.0 589,629 - CA264_02520 0.70 +0.3 589,676 + CA264_02520 0.76 -1.2 589,676 + CA264_02520 0.76 -0.6 589,677 - CA264_02520 0.76 -1.0 589,691 - CA264_02520 0.78 -0.8 589,742 + CA264_02520 0.84 -0.6 589,743 - CA264_02520 0.84 -1.2 589,746 - CA264_02520 0.84 -0.8 589,746 - CA264_02520 0.84 -0.1 589,749 - CA264_02520 0.85 +0.3 589,811 + +0.3 589,811 + +0.8 589,811 + +0.1 589,812 - +0.0 589,812 - -0.8 589,815 + +0.3 589,815 + +0.2 589,873 + -0.0 589,874 - -0.6 589,874 - +1.0 589,874 - -0.2 589,875 + +1.3 589,876 - +0.1 589,876 - +0.4 589,879 + -0.2 589,881 + -0.5 589,881 + -0.2 589,897 + -0.7 589,926 - -1.1
Or see this region's nucleotide sequence