Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02425

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02420 and CA264_02425 are separated by 75 nucleotidesCA264_02425 and CA264_02430 are separated by 237 nucleotides CA264_02420: CA264_02420 - 8-amino-7-oxononanoate synthase, at 563,541 to 564,671 _02420 CA264_02425: CA264_02425 - biotin synthase BioB, at 564,747 to 565,748 _02425 CA264_02430: CA264_02430 - glucoamylase, at 565,986 to 567,818 _02430 Position (kb) 564 565 566Strain fitness (log2 ratio) -2 -1 0 1 2at 563.791 kb on + strand, within CA264_02420at 563.792 kb on - strand, within CA264_02420at 563.796 kb on + strand, within CA264_02420at 563.796 kb on + strand, within CA264_02420at 563.797 kb on - strand, within CA264_02420at 563.797 kb on - strand, within CA264_02420at 563.847 kb on + strand, within CA264_02420at 563.852 kb on + strand, within CA264_02420at 563.852 kb on + strand, within CA264_02420at 563.853 kb on - strand, within CA264_02420at 563.854 kb on + strand, within CA264_02420at 563.855 kb on - strand, within CA264_02420at 563.900 kb on + strand, within CA264_02420at 563.901 kb on - strand, within CA264_02420at 563.902 kb on + strand, within CA264_02420at 563.921 kb on - strand, within CA264_02420at 563.992 kb on + strand, within CA264_02420at 563.993 kb on - strand, within CA264_02420at 564.183 kb on + strand, within CA264_02420at 564.187 kb on + strand, within CA264_02420at 564.187 kb on + strand, within CA264_02420at 564.187 kb on + strand, within CA264_02420at 564.188 kb on - strand, within CA264_02420at 564.188 kb on - strand, within CA264_02420at 564.188 kb on - strand, within CA264_02420at 564.188 kb on - strand, within CA264_02420at 564.188 kb on - strand, within CA264_02420at 564.189 kb on + strand, within CA264_02420at 564.189 kb on + strand, within CA264_02420at 564.370 kb on + strand, within CA264_02420at 564.459 kb on + strand, within CA264_02420at 564.498 kb on - strand, within CA264_02420at 564.499 kb on + strand, within CA264_02420at 564.499 kb on + strand, within CA264_02420at 564.500 kb on - strand, within CA264_02420at 564.560 kb on - strandat 564.665 kb on + strandat 564.665 kb on + strandat 564.665 kb on + strandat 564.665 kb on + strandat 564.671 kb on + strandat 564.671 kb on + strandat 564.712 kb on + strandat 564.712 kb on + strandat 564.728 kb on - strandat 564.745 kb on - strandat 564.748 kb on + strandat 564.748 kb on + strandat 564.749 kb on - strandat 564.788 kb on + strandat 564.789 kb on - strandat 564.789 kb on - strandat 565.094 kb on + strand, within CA264_02425at 565.095 kb on + strand, within CA264_02425at 565.095 kb on - strand, within CA264_02425at 565.098 kb on + strand, within CA264_02425at 565.098 kb on + strand, within CA264_02425at 565.103 kb on + strand, within CA264_02425at 565.103 kb on + strand, within CA264_02425at 565.119 kb on - strand, within CA264_02425at 565.119 kb on - strand, within CA264_02425at 565.151 kb on + strand, within CA264_02425at 565.172 kb on + strand, within CA264_02425at 565.203 kb on - strand, within CA264_02425at 565.216 kb on + strand, within CA264_02425at 565.216 kb on + strand, within CA264_02425at 565.232 kb on + strand, within CA264_02425at 565.232 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.338 kb on - strand, within CA264_02425at 565.508 kb on + strand, within CA264_02425at 565.527 kb on - strand, within CA264_02425at 565.527 kb on - strand, within CA264_02425at 565.583 kb on + strand, within CA264_02425at 565.599 kb on - strand, within CA264_02425at 565.599 kb on - strand, within CA264_02425at 565.602 kb on + strand, within CA264_02425at 565.603 kb on - strand, within CA264_02425at 565.638 kb on + strand, within CA264_02425at 565.639 kb on - strand, within CA264_02425at 565.751 kb on + strandat 565.775 kb on + strandat 565.788 kb on + strandat 565.835 kb on + strandat 565.987 kb on + strandat 565.987 kb on + strandat 565.988 kb on - strandat 566.031 kb on + strandat 566.031 kb on + strandat 566.218 kb on + strand, within CA264_02430at 566.339 kb on + strand, within CA264_02430at 566.468 kb on - strand, within CA264_02430at 566.479 kb on + strand, within CA264_02430at 566.480 kb on - strand, within CA264_02430at 566.546 kb on + strand, within CA264_02430at 566.729 kb on - strand, within CA264_02430

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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563,791 + CA264_02420 0.22 +1.6
563,792 - CA264_02420 0.22 +0.3
563,796 + CA264_02420 0.23 -0.1
563,796 + CA264_02420 0.23 +0.2
563,797 - CA264_02420 0.23 -0.5
563,797 - CA264_02420 0.23 -1.3
563,847 + CA264_02420 0.27 +0.6
563,852 + CA264_02420 0.27 -0.6
563,852 + CA264_02420 0.27 +0.2
563,853 - CA264_02420 0.28 +1.8
563,854 + CA264_02420 0.28 +0.2
563,855 - CA264_02420 0.28 -0.4
563,900 + CA264_02420 0.32 +0.0
563,901 - CA264_02420 0.32 +0.6
563,902 + CA264_02420 0.32 +0.3
563,921 - CA264_02420 0.34 +0.4
563,992 + CA264_02420 0.40 +0.3
563,993 - CA264_02420 0.40 +0.9
564,183 + CA264_02420 0.57 +0.6
564,187 + CA264_02420 0.57 -0.5
564,187 + CA264_02420 0.57 -0.5
564,187 + CA264_02420 0.57 +0.1
564,188 - CA264_02420 0.57 -0.6
564,188 - CA264_02420 0.57 +0.2
564,188 - CA264_02420 0.57 +0.0
564,188 - CA264_02420 0.57 -0.5
564,188 - CA264_02420 0.57 +0.5
564,189 + CA264_02420 0.57 +0.3
564,189 + CA264_02420 0.57 -0.3
564,370 + CA264_02420 0.73 +1.3
564,459 + CA264_02420 0.81 -0.1
564,498 - CA264_02420 0.85 -0.2
564,499 + CA264_02420 0.85 -1.0
564,499 + CA264_02420 0.85 -0.4
564,500 - CA264_02420 0.85 +0.7
564,560 - -0.4
564,665 + -1.2
564,665 + +0.6
564,665 + -0.1
564,665 + +0.1
564,671 + +0.2
564,671 + -0.2
564,712 + +0.8
564,712 + +0.4
564,728 - -0.1
564,745 - -1.9
564,748 + +0.5
564,748 + -0.7
564,749 - -0.1
564,788 + +0.4
564,789 - -0.7
564,789 - -0.2
565,094 + CA264_02425 0.35 +0.2
565,095 + CA264_02425 0.35 -1.2
565,095 - CA264_02425 0.35 -0.9
565,098 + CA264_02425 0.35 -0.7
565,098 + CA264_02425 0.35 -0.7
565,103 + CA264_02425 0.36 +1.8
565,103 + CA264_02425 0.36 +0.6
565,119 - CA264_02425 0.37 -1.2
565,119 - CA264_02425 0.37 +0.0
565,151 + CA264_02425 0.40 +0.4
565,172 + CA264_02425 0.42 -0.1
565,203 - CA264_02425 0.46 +0.6
565,216 + CA264_02425 0.47 +0.0
565,216 + CA264_02425 0.47 -1.7
565,232 + CA264_02425 0.48 +2.3
565,232 + CA264_02425 0.48 -0.1
565,243 + CA264_02425 0.50 -0.2
565,243 + CA264_02425 0.50 +0.1
565,243 + CA264_02425 0.50 +0.4
565,243 + CA264_02425 0.50 +0.8
565,243 + CA264_02425 0.50 -0.7
565,338 - CA264_02425 0.59 +0.4
565,508 + CA264_02425 0.76 -0.3
565,527 - CA264_02425 0.78 +0.5
565,527 - CA264_02425 0.78 +0.2
565,583 + CA264_02425 0.83 +1.6
565,599 - CA264_02425 0.85 +0.3
565,599 - CA264_02425 0.85 -2.7
565,602 + CA264_02425 0.85 +0.8
565,603 - CA264_02425 0.85 -0.3
565,638 + CA264_02425 0.89 -0.2
565,639 - CA264_02425 0.89 -0.2
565,751 + -2.1
565,775 + -1.5
565,788 + -0.5
565,835 + -0.4
565,987 + +0.1
565,987 + +0.3
565,988 - +0.3
566,031 + +0.6
566,031 + +0.3
566,218 + CA264_02430 0.13 +0.1
566,339 + CA264_02430 0.19 -1.3
566,468 - CA264_02430 0.26 -1.9
566,479 + CA264_02430 0.27 -0.6
566,480 - CA264_02430 0.27 -1.3
566,546 + CA264_02430 0.31 -0.6
566,729 - CA264_02430 0.41 +0.4

Or see this region's nucleotide sequence