Strain Fitness in Agrobacterium fabrum C58 around Atu1095

Experiment: Xylobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1094 and Atu1095 are separated by 78 nucleotidesAtu1095 and Atu1096 are separated by 351 nucleotidesAtu1096 and Atu1097 are separated by 251 nucleotides Atu1094: Atu1094 - malonyl-CoA:acyl carrier protein transacylase, at 1,083,983 to 1,084,978 Atu1094 Atu1095: Atu1095 - 3-oxoacyl-(acyl carrier protein) reductase, at 1,085,057 to 1,085,794 Atu1095 Atu1096: Atu1096 - acyl carrier protein, at 1,086,146 to 1,086,382 Atu1096 Atu1097: Atu1097 - 3-oxoacyl-(acyl carrier protein) synthase II, at 1,086,634 to 1,087,896 Atu1097 Position (kb) 1085 1086Strain fitness (log2 ratio) -1 0 1at 1085.819 kb on + strandat 1085.899 kb on + strandat 1085.899 kb on + strandat 1085.899 kb on + strandat 1085.906 kb on + strandat 1085.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylobiose (C)
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1,085,819 + +0.2
1,085,899 + +0.3
1,085,899 + +0.8
1,085,899 + -0.4
1,085,906 + +0.4
1,085,912 - -0.1

Or see this region's nucleotide sequence