Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0402 and Atu0403 overlap by 4 nucleotides Atu0403 and Atu0404 are separated by 55 nucleotides Atu0404 and Atu0405 are separated by 130 nucleotides
Atu0402: Atu0402 - hypothetical protein, at 396,686 to 397,651
Atu0402
Atu0403: Atu0403 - hypothetical protein, at 397,648 to 398,376
Atu0403
Atu0404: Atu0404 - glucose-6-phosphate isomerase, at 398,432 to 400,057
Atu0404
Atu0405: Atu0405 - long-chain-fatty-acid-CoA-ligase, at 400,188 to 401,900
Atu0405
Position (kb) 398
399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 397.446 kb on + strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.561 kb on - strand at 397.585 kb on + strand at 397.593 kb on - strand at 397.619 kb on + strand at 397.676 kb on + strand at 397.694 kb on + strand at 397.712 kb on - strand at 397.732 kb on + strand, within Atu0403 at 397.830 kb on + strand, within Atu0403 at 397.838 kb on - strand, within Atu0403 at 397.979 kb on + strand, within Atu0403 at 397.992 kb on - strand, within Atu0403 at 397.992 kb on - strand, within Atu0403 at 397.997 kb on - strand, within Atu0403 at 398.036 kb on + strand, within Atu0403 at 398.044 kb on + strand, within Atu0403 at 398.083 kb on + strand, within Atu0403 at 398.093 kb on + strand, within Atu0403 at 398.178 kb on + strand, within Atu0403 at 398.186 kb on - strand, within Atu0403 at 398.221 kb on + strand, within Atu0403 at 398.221 kb on + strand, within Atu0403 at 398.229 kb on - strand, within Atu0403 at 398.274 kb on - strand, within Atu0403 at 398.274 kb on - strand, within Atu0403 at 398.274 kb on - strand, within Atu0403 at 398.274 kb on - strand, within Atu0403 at 398.349 kb on + strand at 398.454 kb on + strand at 400.066 kb on - strand at 400.257 kb on - strand at 400.306 kb on + strand at 400.314 kb on - strand at 400.410 kb on - strand, within Atu0405 at 400.412 kb on + strand, within Atu0405 at 400.445 kb on + strand, within Atu0405 at 400.506 kb on + strand, within Atu0405 at 400.572 kb on - strand, within Atu0405 at 400.614 kb on - strand, within Atu0405 at 400.614 kb on - strand, within Atu0405 at 400.614 kb on - strand, within Atu0405 at 400.641 kb on + strand, within Atu0405 at 400.660 kb on + strand, within Atu0405 at 400.709 kb on + strand, within Atu0405 at 400.709 kb on + strand, within Atu0405 at 400.776 kb on - strand, within Atu0405 at 400.779 kb on + strand, within Atu0405 at 400.787 kb on - strand, within Atu0405 at 400.844 kb on + strand, within Atu0405 at 400.844 kb on - strand, within Atu0405 at 400.844 kb on - strand, within Atu0405 at 400.849 kb on - strand, within Atu0405 at 401.015 kb on + strand, within Atu0405 at 401.015 kb on + strand, within Atu0405 at 401.030 kb on + strand, within Atu0405 at 401.030 kb on + strand, within Atu0405
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 397,446 + Atu0402 0.79 +3.4 397,527 - Atu0402 0.87 -0.9 397,527 - Atu0402 0.87 +0.5 397,527 - Atu0402 0.87 -0.4 397,527 - Atu0402 0.87 -0.3 397,561 - -0.3 397,585 + -0.2 397,593 - -0.6 397,619 + -0.9 397,676 + -0.3 397,694 + +0.6 397,712 - -0.1 397,732 + Atu0403 0.12 +0.5 397,830 + Atu0403 0.25 -0.4 397,838 - Atu0403 0.26 -0.0 397,979 + Atu0403 0.45 +0.4 397,992 - Atu0403 0.47 +0.1 397,992 - Atu0403 0.47 +0.0 397,997 - Atu0403 0.48 +1.3 398,036 + Atu0403 0.53 +0.1 398,044 + Atu0403 0.54 -0.6 398,083 + Atu0403 0.60 -0.2 398,093 + Atu0403 0.61 -0.3 398,178 + Atu0403 0.73 +0.2 398,186 - Atu0403 0.74 +1.4 398,221 + Atu0403 0.79 -1.3 398,221 + Atu0403 0.79 -0.1 398,229 - Atu0403 0.80 -0.2 398,274 - Atu0403 0.86 +0.4 398,274 - Atu0403 0.86 +0.2 398,274 - Atu0403 0.86 -0.2 398,274 - Atu0403 0.86 -0.2 398,349 + +0.9 398,454 + -0.7 400,066 - -0.6 400,257 - -2.8 400,306 + -1.4 400,314 - -2.1 400,410 - Atu0405 0.13 -1.2 400,412 + Atu0405 0.13 -1.9 400,445 + Atu0405 0.15 -1.4 400,506 + Atu0405 0.19 -3.0 400,572 - Atu0405 0.22 -1.5 400,614 - Atu0405 0.25 -2.9 400,614 - Atu0405 0.25 -1.4 400,614 - Atu0405 0.25 -1.0 400,641 + Atu0405 0.26 -1.4 400,660 + Atu0405 0.28 -0.2 400,709 + Atu0405 0.30 +0.8 400,709 + Atu0405 0.30 -1.5 400,776 - Atu0405 0.34 -1.0 400,779 + Atu0405 0.35 -2.6 400,787 - Atu0405 0.35 -1.9 400,844 + Atu0405 0.38 -0.8 400,844 - Atu0405 0.38 -3.4 400,844 - Atu0405 0.38 -2.0 400,849 - Atu0405 0.39 -1.3 401,015 + Atu0405 0.48 -1.8 401,015 + Atu0405 0.48 -1.6 401,030 + Atu0405 0.49 -1.6 401,030 + Atu0405 0.49 -0.8
Or see this region's nucleotide sequence