Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_992

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_991 and PfGW456L13_992 overlap by 8 nucleotidesPfGW456L13_992 and PfGW456L13_993 are separated by 342 nucleotides PfGW456L13_991 - FIG015287: Zinc protease, at 1,105,730 to 1,107,220 _991 PfGW456L13_992 - FIG015547: peptidase, M16 family, at 1,107,213 to 1,108,568 _992 PfGW456L13_993 - Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1), at 1,108,911 to 1,110,452 _993 Position (kb) 1107 1108 1109Strain fitness (log2 ratio) -2 -1 0 1 2at 1106.269 kb on - strand, within PfGW456L13_991at 1106.490 kb on + strand, within PfGW456L13_991at 1106.490 kb on + strand, within PfGW456L13_991at 1106.490 kb on + strand, within PfGW456L13_991at 1106.571 kb on + strand, within PfGW456L13_991at 1106.586 kb on + strand, within PfGW456L13_991at 1106.586 kb on + strand, within PfGW456L13_991at 1106.586 kb on + strand, within PfGW456L13_991at 1106.586 kb on + strand, within PfGW456L13_991at 1106.586 kb on + strand, within PfGW456L13_991at 1106.586 kb on + strand, within PfGW456L13_991at 1106.586 kb on + strand, within PfGW456L13_991at 1106.587 kb on - strand, within PfGW456L13_991at 1106.587 kb on - strand, within PfGW456L13_991at 1106.587 kb on - strand, within PfGW456L13_991at 1106.587 kb on - strand, within PfGW456L13_991at 1106.587 kb on - strand, within PfGW456L13_991at 1106.641 kb on - strand, within PfGW456L13_991at 1106.765 kb on - strand, within PfGW456L13_991at 1107.144 kb on + strandat 1107.144 kb on + strandat 1107.144 kb on + strandat 1107.145 kb on - strandat 1107.145 kb on - strandat 1107.145 kb on - strandat 1107.145 kb on - strandat 1107.208 kb on + strandat 1107.240 kb on + strandat 1107.240 kb on + strandat 1107.240 kb on + strandat 1107.240 kb on + strandat 1107.240 kb on + strandat 1107.240 kb on + strandat 1107.240 kb on + strandat 1107.240 kb on + strandat 1107.240 kb on + strandat 1107.240 kb on + strandat 1107.240 kb on + strandat 1107.241 kb on - strandat 1107.241 kb on - strandat 1107.241 kb on - strandat 1107.241 kb on - strandat 1107.241 kb on - strandat 1107.241 kb on - strandat 1107.241 kb on - strandat 1107.241 kb on - strandat 1107.274 kb on + strandat 1107.274 kb on + strandat 1107.274 kb on + strandat 1107.274 kb on + strandat 1107.274 kb on + strandat 1107.275 kb on - strandat 1107.588 kb on - strand, within PfGW456L13_992at 1107.589 kb on + strand, within PfGW456L13_992at 1107.589 kb on + strand, within PfGW456L13_992at 1107.589 kb on + strand, within PfGW456L13_992at 1107.590 kb on - strand, within PfGW456L13_992at 1107.598 kb on + strand, within PfGW456L13_992at 1107.871 kb on + strand, within PfGW456L13_992at 1107.872 kb on - strand, within PfGW456L13_992at 1107.946 kb on + strand, within PfGW456L13_992at 1107.946 kb on + strand, within PfGW456L13_992at 1107.946 kb on + strand, within PfGW456L13_992at 1107.946 kb on + strand, within PfGW456L13_992at 1107.946 kb on + strand, within PfGW456L13_992at 1107.947 kb on - strand, within PfGW456L13_992at 1107.947 kb on - strand, within PfGW456L13_992at 1108.016 kb on + strand, within PfGW456L13_992at 1108.017 kb on - strand, within PfGW456L13_992at 1108.066 kb on + strand, within PfGW456L13_992at 1108.226 kb on - strand, within PfGW456L13_992at 1108.226 kb on - strand, within PfGW456L13_992at 1108.226 kb on - strand, within PfGW456L13_992at 1108.228 kb on + strand, within PfGW456L13_992at 1108.228 kb on + strand, within PfGW456L13_992at 1108.229 kb on - strand, within PfGW456L13_992at 1108.229 kb on - strand, within PfGW456L13_992at 1108.361 kb on + strand, within PfGW456L13_992at 1108.362 kb on - strand, within PfGW456L13_992at 1108.364 kb on + strand, within PfGW456L13_992at 1108.378 kb on + strand, within PfGW456L13_992at 1108.378 kb on + strand, within PfGW456L13_992at 1108.396 kb on + strand, within PfGW456L13_992at 1108.397 kb on - strand, within PfGW456L13_992at 1108.604 kb on + strandat 1108.605 kb on - strandat 1108.605 kb on - strandat 1108.633 kb on + strandat 1108.633 kb on + strandat 1108.725 kb on + strandat 1108.856 kb on + strandat 1108.856 kb on + strandat 1108.856 kb on + strandat 1108.856 kb on + strandat 1108.860 kb on + strandat 1108.860 kb on + strandat 1108.860 kb on + strandat 1109.059 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,106,269 - PfGW456L13_991 0.36 +0.3
1,106,490 + PfGW456L13_991 0.51 +0.0
1,106,490 + PfGW456L13_991 0.51 -0.6
1,106,490 + PfGW456L13_991 0.51 +0.4
1,106,571 + PfGW456L13_991 0.56 +0.8
1,106,586 + PfGW456L13_991 0.57 -1.3
1,106,586 + PfGW456L13_991 0.57 -0.1
1,106,586 + PfGW456L13_991 0.57 -1.7
1,106,586 + PfGW456L13_991 0.57 +0.5
1,106,586 + PfGW456L13_991 0.57 +0.6
1,106,586 + PfGW456L13_991 0.57 -0.4
1,106,586 + PfGW456L13_991 0.57 -0.4
1,106,587 - PfGW456L13_991 0.57 +0.0
1,106,587 - PfGW456L13_991 0.57 +0.9
1,106,587 - PfGW456L13_991 0.57 +0.3
1,106,587 - PfGW456L13_991 0.57 +1.5
1,106,587 - PfGW456L13_991 0.57 +1.1
1,106,641 - PfGW456L13_991 0.61 -0.6
1,106,765 - PfGW456L13_991 0.69 -0.4
1,107,144 + +0.9
1,107,144 + -0.9
1,107,144 + +0.4
1,107,145 - -0.5
1,107,145 - -0.8
1,107,145 - +0.5
1,107,145 - -0.7
1,107,208 + +0.3
1,107,240 + -0.6
1,107,240 + -1.0
1,107,240 + +1.1
1,107,240 + +1.1
1,107,240 + -1.2
1,107,240 + -2.6
1,107,240 + -0.2
1,107,240 + +1.6
1,107,240 + +1.1
1,107,240 + -0.7
1,107,240 + -1.1
1,107,241 - -2.0
1,107,241 - +0.9
1,107,241 - -0.7
1,107,241 - +0.5
1,107,241 - +0.8
1,107,241 - +0.4
1,107,241 - -1.5
1,107,241 - -0.5
1,107,274 + +0.1
1,107,274 + +1.8
1,107,274 + +0.3
1,107,274 + +1.6
1,107,274 + +0.9
1,107,275 - +0.7
1,107,588 - PfGW456L13_992 0.28 -0.2
1,107,589 + PfGW456L13_992 0.28 -0.0
1,107,589 + PfGW456L13_992 0.28 +0.2
1,107,589 + PfGW456L13_992 0.28 -2.0
1,107,590 - PfGW456L13_992 0.28 +1.4
1,107,598 + PfGW456L13_992 0.28 -2.3
1,107,871 + PfGW456L13_992 0.49 -0.7
1,107,872 - PfGW456L13_992 0.49 -0.9
1,107,946 + PfGW456L13_992 0.54 -1.2
1,107,946 + PfGW456L13_992 0.54 -1.2
1,107,946 + PfGW456L13_992 0.54 +0.6
1,107,946 + PfGW456L13_992 0.54 +1.0
1,107,946 + PfGW456L13_992 0.54 +0.0
1,107,947 - PfGW456L13_992 0.54 +0.3
1,107,947 - PfGW456L13_992 0.54 +1.2
1,108,016 + PfGW456L13_992 0.59 -0.8
1,108,017 - PfGW456L13_992 0.59 -1.2
1,108,066 + PfGW456L13_992 0.63 -0.5
1,108,226 - PfGW456L13_992 0.75 +0.7
1,108,226 - PfGW456L13_992 0.75 -0.6
1,108,226 - PfGW456L13_992 0.75 -0.6
1,108,228 + PfGW456L13_992 0.75 -1.4
1,108,228 + PfGW456L13_992 0.75 +0.0
1,108,229 - PfGW456L13_992 0.75 +0.0
1,108,229 - PfGW456L13_992 0.75 +0.2
1,108,361 + PfGW456L13_992 0.85 +0.2
1,108,362 - PfGW456L13_992 0.85 -0.4
1,108,364 + PfGW456L13_992 0.85 -0.9
1,108,378 + PfGW456L13_992 0.86 +0.8
1,108,378 + PfGW456L13_992 0.86 +1.6
1,108,396 + PfGW456L13_992 0.87 -0.2
1,108,397 - PfGW456L13_992 0.87 +0.4
1,108,604 + -0.1
1,108,605 - +0.9
1,108,605 - -0.8
1,108,633 + +0.6
1,108,633 + +0.6
1,108,725 + +0.0
1,108,856 + +0.9
1,108,856 + +0.1
1,108,856 + -0.3
1,108,856 + -1.6
1,108,860 + -0.5
1,108,860 + -0.3
1,108,860 + +0.1
1,109,059 + -1.8

Or see this region's nucleotide sequence