Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_78

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_77 and PfGW456L13_78 are separated by 156 nucleotidesPfGW456L13_78 and PfGW456L13_79 overlap by 4 nucleotidesPfGW456L13_79 and PfGW456L13_80 overlap by 4 nucleotides PfGW456L13_77 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 87,862 to 89,241 _77 PfGW456L13_78 - ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component, at 89,398 to 90,186 _78 PfGW456L13_79 - ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component, at 90,183 to 91,142 _79 PfGW456L13_80 - ABC transporter (iron.B12.siderophore.hemin) , permease component, at 91,139 to 92,149 _80 Position (kb) 89 90 91Strain fitness (log2 ratio) -1 0 1 2at 88.409 kb on + strand, within PfGW456L13_77at 88.409 kb on + strand, within PfGW456L13_77at 88.514 kb on - strand, within PfGW456L13_77at 88.514 kb on - strand, within PfGW456L13_77at 88.514 kb on - strand, within PfGW456L13_77at 88.727 kb on + strand, within PfGW456L13_77at 88.728 kb on - strand, within PfGW456L13_77at 88.728 kb on - strand, within PfGW456L13_77at 88.728 kb on - strand, within PfGW456L13_77at 88.728 kb on - strand, within PfGW456L13_77at 88.765 kb on + strand, within PfGW456L13_77at 88.861 kb on + strand, within PfGW456L13_77at 88.861 kb on + strand, within PfGW456L13_77at 88.862 kb on - strand, within PfGW456L13_77at 88.886 kb on + strand, within PfGW456L13_77at 88.886 kb on + strand, within PfGW456L13_77at 88.886 kb on + strand, within PfGW456L13_77at 88.887 kb on - strand, within PfGW456L13_77at 88.982 kb on + strand, within PfGW456L13_77at 88.983 kb on - strand, within PfGW456L13_77at 89.274 kb on + strandat 89.274 kb on + strandat 89.274 kb on + strandat 89.275 kb on - strandat 89.335 kb on + strandat 89.336 kb on - strandat 89.336 kb on - strandat 90.034 kb on + strand, within PfGW456L13_78at 90.034 kb on + strand, within PfGW456L13_78at 90.035 kb on - strand, within PfGW456L13_78at 90.035 kb on - strand, within PfGW456L13_78at 90.055 kb on - strand, within PfGW456L13_78at 90.478 kb on - strand, within PfGW456L13_79at 90.537 kb on + strand, within PfGW456L13_79at 90.538 kb on - strand, within PfGW456L13_79at 90.538 kb on - strand, within PfGW456L13_79at 90.600 kb on + strand, within PfGW456L13_79at 90.600 kb on + strand, within PfGW456L13_79at 90.600 kb on + strand, within PfGW456L13_79at 90.600 kb on + strand, within PfGW456L13_79at 90.601 kb on - strand, within PfGW456L13_79at 90.601 kb on - strand, within PfGW456L13_79at 90.663 kb on + strand, within PfGW456L13_79at 90.663 kb on + strand, within PfGW456L13_79at 90.663 kb on + strand, within PfGW456L13_79at 90.663 kb on + strand, within PfGW456L13_79at 90.664 kb on - strand, within PfGW456L13_79at 90.664 kb on - strand, within PfGW456L13_79at 90.795 kb on + strand, within PfGW456L13_79at 90.839 kb on + strand, within PfGW456L13_79at 91.068 kb on + strandat 91.068 kb on + strandat 91.069 kb on - strandat 91.069 kb on - strandat 91.069 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
88,409 + PfGW456L13_77 0.40 +0.3
88,409 + PfGW456L13_77 0.40 +0.9
88,514 - PfGW456L13_77 0.47 -1.0
88,514 - PfGW456L13_77 0.47 +1.7
88,514 - PfGW456L13_77 0.47 -0.1
88,727 + PfGW456L13_77 0.63 +0.8
88,728 - PfGW456L13_77 0.63 -0.8
88,728 - PfGW456L13_77 0.63 -0.1
88,728 - PfGW456L13_77 0.63 +0.8
88,728 - PfGW456L13_77 0.63 -0.7
88,765 + PfGW456L13_77 0.65 +1.1
88,861 + PfGW456L13_77 0.72 -1.5
88,861 + PfGW456L13_77 0.72 -0.5
88,862 - PfGW456L13_77 0.72 +1.2
88,886 + PfGW456L13_77 0.74 -0.0
88,886 + PfGW456L13_77 0.74 +0.7
88,886 + PfGW456L13_77 0.74 -1.0
88,887 - PfGW456L13_77 0.74 +0.6
88,982 + PfGW456L13_77 0.81 -0.6
88,983 - PfGW456L13_77 0.81 -0.4
89,274 + +1.4
89,274 + -0.5
89,274 + +0.4
89,275 - +0.1
89,335 + +0.5
89,336 - +1.5
89,336 - +0.1
90,034 + PfGW456L13_78 0.81 +0.4
90,034 + PfGW456L13_78 0.81 +1.9
90,035 - PfGW456L13_78 0.81 +0.5
90,035 - PfGW456L13_78 0.81 +0.2
90,055 - PfGW456L13_78 0.83 -0.3
90,478 - PfGW456L13_79 0.31 -0.4
90,537 + PfGW456L13_79 0.37 +0.4
90,538 - PfGW456L13_79 0.37 +0.4
90,538 - PfGW456L13_79 0.37 +1.0
90,600 + PfGW456L13_79 0.43 -0.0
90,600 + PfGW456L13_79 0.43 +0.1
90,600 + PfGW456L13_79 0.43 -0.9
90,600 + PfGW456L13_79 0.43 -1.6
90,601 - PfGW456L13_79 0.44 +0.2
90,601 - PfGW456L13_79 0.44 -1.4
90,663 + PfGW456L13_79 0.50 +0.6
90,663 + PfGW456L13_79 0.50 +0.4
90,663 + PfGW456L13_79 0.50 -0.6
90,663 + PfGW456L13_79 0.50 -0.5
90,664 - PfGW456L13_79 0.50 -0.7
90,664 - PfGW456L13_79 0.50 +0.1
90,795 + PfGW456L13_79 0.64 +1.1
90,839 + PfGW456L13_79 0.68 +0.1
91,068 + -1.7
91,068 + +0.9
91,069 - -0.2
91,069 - -0.9
91,069 - -0.3

Or see this region's nucleotide sequence