Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4994

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4992 and PfGW456L13_4993 are separated by 9 nucleotidesPfGW456L13_4993 and PfGW456L13_4994 overlap by 21 nucleotidesPfGW456L13_4994 and PfGW456L13_4995 are separated by 21 nucleotidesPfGW456L13_4995 and PfGW456L13_4996 overlap by 4 nucleotides PfGW456L13_4992 - Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25), at 5,570,744 to 5,572,642 _4992 PfGW456L13_4993 - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4), at 5,572,652 to 5,573,569 _4993 PfGW456L13_4994 - hypothetical protein, at 5,573,549 to 5,573,767 _4994 PfGW456L13_4995 - Mobile element protein, at 5,573,789 to 5,574,094 _4995 PfGW456L13_4996 - Mobile element protein, at 5,574,091 to 5,574,927 _4996 Position (kb) 5573 5574Strain fitness (log2 ratio) -2 -1 0 1 2at 5572.579 kb on + strandat 5572.579 kb on + strandat 5572.579 kb on + strandat 5572.579 kb on + strandat 5572.580 kb on - strandat 5572.599 kb on + strandat 5572.653 kb on + strandat 5572.660 kb on - strandat 5572.660 kb on - strandat 5572.660 kb on - strandat 5572.947 kb on + strand, within PfGW456L13_4993at 5572.947 kb on + strand, within PfGW456L13_4993at 5572.948 kb on - strand, within PfGW456L13_4993at 5572.948 kb on - strand, within PfGW456L13_4993at 5572.977 kb on + strand, within PfGW456L13_4993at 5572.977 kb on + strand, within PfGW456L13_4993at 5572.977 kb on + strand, within PfGW456L13_4993at 5572.977 kb on + strand, within PfGW456L13_4993at 5572.977 kb on + strand, within PfGW456L13_4993at 5572.978 kb on - strand, within PfGW456L13_4993at 5572.978 kb on - strand, within PfGW456L13_4993at 5572.978 kb on - strand, within PfGW456L13_4993at 5572.978 kb on - strand, within PfGW456L13_4993at 5572.978 kb on - strand, within PfGW456L13_4993at 5572.978 kb on - strand, within PfGW456L13_4993at 5572.978 kb on - strand, within PfGW456L13_4993at 5572.978 kb on - strand, within PfGW456L13_4993at 5572.978 kb on - strand, within PfGW456L13_4993at 5572.983 kb on + strand, within PfGW456L13_4993at 5572.983 kb on + strand, within PfGW456L13_4993at 5572.983 kb on + strand, within PfGW456L13_4993at 5572.983 kb on + strand, within PfGW456L13_4993at 5572.983 kb on + strand, within PfGW456L13_4993at 5572.984 kb on - strand, within PfGW456L13_4993at 5572.984 kb on - strand, within PfGW456L13_4993at 5572.984 kb on - strand, within PfGW456L13_4993at 5572.984 kb on - strand, within PfGW456L13_4993at 5572.984 kb on - strand, within PfGW456L13_4993at 5572.984 kb on - strand, within PfGW456L13_4993at 5572.984 kb on - strand, within PfGW456L13_4993at 5572.984 kb on - strand, within PfGW456L13_4993at 5573.061 kb on + strandat 5573.127 kb on + strand, within PfGW456L13_4993at 5573.127 kb on + strand, within PfGW456L13_4993at 5573.127 kb on + strand, within PfGW456L13_4993at 5573.196 kb on + strand, within PfGW456L13_4993at 5573.196 kb on + strand, within PfGW456L13_4993at 5573.196 kb on + strand, within PfGW456L13_4993at 5573.196 kb on + strand, within PfGW456L13_4993at 5573.197 kb on - strand, within PfGW456L13_4993at 5573.197 kb on - strand, within PfGW456L13_4993at 5573.197 kb on - strand, within PfGW456L13_4993at 5573.197 kb on - strand, within PfGW456L13_4993at 5573.197 kb on - strand, within PfGW456L13_4993at 5573.197 kb on - strand, within PfGW456L13_4993at 5573.197 kb on - strand, within PfGW456L13_4993at 5573.355 kb on + strand, within PfGW456L13_4993at 5573.355 kb on + strand, within PfGW456L13_4993at 5573.355 kb on + strand, within PfGW456L13_4993at 5573.355 kb on + strand, within PfGW456L13_4993at 5573.356 kb on - strand, within PfGW456L13_4993at 5573.356 kb on - strand, within PfGW456L13_4993at 5573.356 kb on - strand, within PfGW456L13_4993at 5573.356 kb on - strand, within PfGW456L13_4993at 5573.356 kb on - strand, within PfGW456L13_4993at 5573.462 kb on - strand, within PfGW456L13_4993at 5573.472 kb on + strand, within PfGW456L13_4993at 5573.472 kb on + strand, within PfGW456L13_4993at 5573.472 kb on + strand, within PfGW456L13_4993at 5573.473 kb on - strand, within PfGW456L13_4993at 5573.591 kb on + strand, within PfGW456L13_4994at 5573.591 kb on + strand, within PfGW456L13_4994at 5573.592 kb on - strand, within PfGW456L13_4994at 5573.628 kb on + strand, within PfGW456L13_4994at 5573.628 kb on + strand, within PfGW456L13_4994at 5573.628 kb on + strand, within PfGW456L13_4994at 5573.628 kb on + strand, within PfGW456L13_4994at 5573.628 kb on + strand, within PfGW456L13_4994at 5573.628 kb on + strand, within PfGW456L13_4994at 5573.629 kb on - strand, within PfGW456L13_4994at 5573.629 kb on - strand, within PfGW456L13_4994at 5573.629 kb on - strand, within PfGW456L13_4994at 5573.629 kb on - strand, within PfGW456L13_4994at 5573.629 kb on - strand, within PfGW456L13_4994at 5573.646 kb on + strand, within PfGW456L13_4994at 5573.647 kb on - strand, within PfGW456L13_4994at 5573.647 kb on - strand, within PfGW456L13_4994at 5573.647 kb on - strand, within PfGW456L13_4994at 5573.677 kb on + strand, within PfGW456L13_4994at 5573.678 kb on - strand, within PfGW456L13_4994at 5573.678 kb on - strand, within PfGW456L13_4994at 5573.678 kb on - strand, within PfGW456L13_4994at 5573.684 kb on - strand, within PfGW456L13_4994at 5573.713 kb on - strand, within PfGW456L13_4994at 5573.738 kb on - strand, within PfGW456L13_4994at 5573.738 kb on - strand, within PfGW456L13_4994

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,572,579 + -0.3
5,572,579 + -0.8
5,572,579 + +0.7
5,572,579 + +1.3
5,572,580 - -0.5
5,572,599 + +0.6
5,572,653 + +0.3
5,572,660 - -1.3
5,572,660 - -0.2
5,572,660 - -0.7
5,572,947 + PfGW456L13_4993 0.32 -0.4
5,572,947 + PfGW456L13_4993 0.32 +0.7
5,572,948 - PfGW456L13_4993 0.32 -1.1
5,572,948 - PfGW456L13_4993 0.32 +1.1
5,572,977 + PfGW456L13_4993 0.35 +0.3
5,572,977 + PfGW456L13_4993 0.35 -0.3
5,572,977 + PfGW456L13_4993 0.35 -0.0
5,572,977 + PfGW456L13_4993 0.35 +0.6
5,572,977 + PfGW456L13_4993 0.35 +0.4
5,572,978 - PfGW456L13_4993 0.36 -0.1
5,572,978 - PfGW456L13_4993 0.36 +0.6
5,572,978 - PfGW456L13_4993 0.36 -0.6
5,572,978 - PfGW456L13_4993 0.36 +0.5
5,572,978 - PfGW456L13_4993 0.36 -0.5
5,572,978 - PfGW456L13_4993 0.36 -0.7
5,572,978 - PfGW456L13_4993 0.36 +0.1
5,572,978 - PfGW456L13_4993 0.36 +0.3
5,572,978 - PfGW456L13_4993 0.36 -2.4
5,572,983 + PfGW456L13_4993 0.36 -0.3
5,572,983 + PfGW456L13_4993 0.36 -0.9
5,572,983 + PfGW456L13_4993 0.36 -0.4
5,572,983 + PfGW456L13_4993 0.36 -0.6
5,572,983 + PfGW456L13_4993 0.36 +0.0
5,572,984 - PfGW456L13_4993 0.36 -0.5
5,572,984 - PfGW456L13_4993 0.36 +1.3
5,572,984 - PfGW456L13_4993 0.36 -0.0
5,572,984 - PfGW456L13_4993 0.36 +0.5
5,572,984 - PfGW456L13_4993 0.36 -1.2
5,572,984 - PfGW456L13_4993 0.36 -0.8
5,572,984 - PfGW456L13_4993 0.36 +0.2
5,572,984 - PfGW456L13_4993 0.36 -0.1
5,573,061 + +0.3
5,573,127 + PfGW456L13_4993 0.52 -1.6
5,573,127 + PfGW456L13_4993 0.52 -0.1
5,573,127 + PfGW456L13_4993 0.52 +0.4
5,573,196 + PfGW456L13_4993 0.59 -1.6
5,573,196 + PfGW456L13_4993 0.59 +1.6
5,573,196 + PfGW456L13_4993 0.59 +0.9
5,573,196 + PfGW456L13_4993 0.59 +0.6
5,573,197 - PfGW456L13_4993 0.59 +1.0
5,573,197 - PfGW456L13_4993 0.59 -1.0
5,573,197 - PfGW456L13_4993 0.59 -0.4
5,573,197 - PfGW456L13_4993 0.59 +0.8
5,573,197 - PfGW456L13_4993 0.59 -0.8
5,573,197 - PfGW456L13_4993 0.59 +1.4
5,573,197 - PfGW456L13_4993 0.59 -0.6
5,573,355 + PfGW456L13_4993 0.77 -0.1
5,573,355 + PfGW456L13_4993 0.77 -0.3
5,573,355 + PfGW456L13_4993 0.77 +2.1
5,573,355 + PfGW456L13_4993 0.77 +0.4
5,573,356 - PfGW456L13_4993 0.77 -0.7
5,573,356 - PfGW456L13_4993 0.77 +0.3
5,573,356 - PfGW456L13_4993 0.77 -1.3
5,573,356 - PfGW456L13_4993 0.77 +0.9
5,573,356 - PfGW456L13_4993 0.77 -1.0
5,573,462 - PfGW456L13_4993 0.88 -0.2
5,573,472 + PfGW456L13_4993 0.89 +0.2
5,573,472 + PfGW456L13_4993 0.89 +0.4
5,573,472 + PfGW456L13_4993 0.89 -0.0
5,573,473 - PfGW456L13_4993 0.89 -0.7
5,573,591 + PfGW456L13_4994 0.19 +0.6
5,573,591 + PfGW456L13_4994 0.19 -0.6
5,573,592 - PfGW456L13_4994 0.20 +0.9
5,573,628 + PfGW456L13_4994 0.36 +1.2
5,573,628 + PfGW456L13_4994 0.36 -2.2
5,573,628 + PfGW456L13_4994 0.36 +0.1
5,573,628 + PfGW456L13_4994 0.36 -1.0
5,573,628 + PfGW456L13_4994 0.36 -0.2
5,573,628 + PfGW456L13_4994 0.36 -1.7
5,573,629 - PfGW456L13_4994 0.37 +0.6
5,573,629 - PfGW456L13_4994 0.37 -0.6
5,573,629 - PfGW456L13_4994 0.37 -1.2
5,573,629 - PfGW456L13_4994 0.37 +0.1
5,573,629 - PfGW456L13_4994 0.37 -0.2
5,573,646 + PfGW456L13_4994 0.44 +1.0
5,573,647 - PfGW456L13_4994 0.45 +0.3
5,573,647 - PfGW456L13_4994 0.45 -0.2
5,573,647 - PfGW456L13_4994 0.45 -1.0
5,573,677 + PfGW456L13_4994 0.58 +2.2
5,573,678 - PfGW456L13_4994 0.59 -0.3
5,573,678 - PfGW456L13_4994 0.59 -0.1
5,573,678 - PfGW456L13_4994 0.59 -2.3
5,573,684 - PfGW456L13_4994 0.62 -0.4
5,573,713 - PfGW456L13_4994 0.75 -0.3
5,573,738 - PfGW456L13_4994 0.86 -1.2
5,573,738 - PfGW456L13_4994 0.86 -0.3

Or see this region's nucleotide sequence