Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4080

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4079 and PfGW456L13_4080 are separated by 222 nucleotidesPfGW456L13_4080 and PfGW456L13_4081 are separated by 212 nucleotides PfGW456L13_4079 - FIG00954563: hypothetical protein, at 4,578,459 to 4,579,625 _4079 PfGW456L13_4080 - DNA ligase (EC 6.5.1.2), at 4,579,848 to 4,582,205 _4080 PfGW456L13_4081 - Cell division protein ZipA, at 4,582,418 to 4,583,272 _4081 Position (kb) 4579 4580 4581 4582 4583Strain fitness (log2 ratio) -2 -1 0 1at 4578.892 kb on + strand, within PfGW456L13_4079at 4578.892 kb on + strand, within PfGW456L13_4079at 4578.892 kb on + strand, within PfGW456L13_4079at 4578.892 kb on + strand, within PfGW456L13_4079at 4578.892 kb on + strand, within PfGW456L13_4079at 4578.893 kb on - strand, within PfGW456L13_4079at 4578.893 kb on - strand, within PfGW456L13_4079at 4578.893 kb on - strand, within PfGW456L13_4079at 4578.893 kb on - strand, within PfGW456L13_4079at 4578.893 kb on - strand, within PfGW456L13_4079at 4578.893 kb on - strandat 4578.967 kb on + strand, within PfGW456L13_4079at 4578.968 kb on - strand, within PfGW456L13_4079at 4578.968 kb on - strand, within PfGW456L13_4079at 4578.968 kb on - strand, within PfGW456L13_4079at 4578.968 kb on - strand, within PfGW456L13_4079at 4578.968 kb on - strand, within PfGW456L13_4079at 4578.970 kb on + strand, within PfGW456L13_4079at 4578.970 kb on + strand, within PfGW456L13_4079at 4578.971 kb on - strand, within PfGW456L13_4079at 4578.971 kb on - strand, within PfGW456L13_4079at 4578.971 kb on - strand, within PfGW456L13_4079at 4579.188 kb on + strand, within PfGW456L13_4079at 4579.189 kb on - strand, within PfGW456L13_4079at 4579.346 kb on + strand, within PfGW456L13_4079at 4579.346 kb on + strand, within PfGW456L13_4079at 4579.347 kb on - strand, within PfGW456L13_4079at 4579.621 kb on + strandat 4579.621 kb on + strandat 4579.621 kb on + strandat 4579.622 kb on - strandat 4579.655 kb on + strandat 4579.655 kb on + strandat 4579.655 kb on + strandat 4579.655 kb on + strandat 4579.655 kb on + strandat 4579.655 kb on + strandat 4579.656 kb on - strandat 4579.656 kb on - strandat 4579.656 kb on - strandat 4579.656 kb on - strandat 4579.796 kb on - strandat 4579.796 kb on - strandat 4579.849 kb on + strandat 4582.255 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,578,892 + PfGW456L13_4079 0.37 +0.5
4,578,892 + PfGW456L13_4079 0.37 -1.2
4,578,892 + PfGW456L13_4079 0.37 +0.7
4,578,892 + PfGW456L13_4079 0.37 -0.3
4,578,892 + PfGW456L13_4079 0.37 -0.2
4,578,893 - PfGW456L13_4079 0.37 -0.3
4,578,893 - PfGW456L13_4079 0.37 -0.0
4,578,893 - PfGW456L13_4079 0.37 +1.1
4,578,893 - PfGW456L13_4079 0.37 -0.0
4,578,893 - PfGW456L13_4079 0.37 -0.4
4,578,893 - +0.6
4,578,967 + PfGW456L13_4079 0.44 +1.2
4,578,968 - PfGW456L13_4079 0.44 -0.6
4,578,968 - PfGW456L13_4079 0.44 -0.0
4,578,968 - PfGW456L13_4079 0.44 -0.6
4,578,968 - PfGW456L13_4079 0.44 -0.2
4,578,968 - PfGW456L13_4079 0.44 -0.0
4,578,970 + PfGW456L13_4079 0.44 -0.8
4,578,970 + PfGW456L13_4079 0.44 +0.2
4,578,971 - PfGW456L13_4079 0.44 +0.7
4,578,971 - PfGW456L13_4079 0.44 -0.6
4,578,971 - PfGW456L13_4079 0.44 +0.4
4,579,188 + PfGW456L13_4079 0.62 +0.3
4,579,189 - PfGW456L13_4079 0.63 -0.6
4,579,346 + PfGW456L13_4079 0.76 -2.1
4,579,346 + PfGW456L13_4079 0.76 -0.5
4,579,347 - PfGW456L13_4079 0.76 -1.1
4,579,621 + +1.2
4,579,621 + +0.9
4,579,621 + -0.6
4,579,622 - +0.7
4,579,655 + +1.3
4,579,655 + -1.5
4,579,655 + +0.9
4,579,655 + -0.3
4,579,655 + +0.7
4,579,655 + +0.6
4,579,656 - -1.6
4,579,656 - -0.9
4,579,656 - -1.3
4,579,656 - +0.4
4,579,796 - -0.4
4,579,796 - +1.1
4,579,849 + -0.0
4,582,255 + -0.6

Or see this region's nucleotide sequence