Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3967

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3965 and PfGW456L13_3966 are separated by 55 nucleotidesPfGW456L13_3966 and PfGW456L13_3967 are separated by 113 nucleotidesPfGW456L13_3967 and PfGW456L13_3968 are separated by 549 nucleotidesPfGW456L13_3968 and PfGW456L13_3969 are separated by 32 nucleotides PfGW456L13_3965 - hypothetical protein, at 4,448,798 to 4,449,103 _3965 PfGW456L13_3966 - N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118), at 4,449,159 to 4,449,989 _3966 PfGW456L13_3967 - Exodeoxyribonuclease III (EC 3.1.11.2), at 4,450,103 to 4,450,897 _3967 PfGW456L13_3968 - hypothetical protein, at 4,451,447 to 4,451,575 _3968 PfGW456L13_3969 - FIG312471: hypothetical protein, at 4,451,608 to 4,453,014 _3969 Position (kb) 4450 4451Strain fitness (log2 ratio) -2 -1 0 1 2at 4449.406 kb on + strand, within PfGW456L13_3966at 4449.407 kb on - strand, within PfGW456L13_3966at 4449.460 kb on + strand, within PfGW456L13_3966at 4449.460 kb on + strand, within PfGW456L13_3966at 4449.460 kb on + strand, within PfGW456L13_3966at 4449.460 kb on + strand, within PfGW456L13_3966at 4449.460 kb on + strand, within PfGW456L13_3966at 4449.461 kb on - strand, within PfGW456L13_3966at 4449.461 kb on - strand, within PfGW456L13_3966at 4449.461 kb on - strand, within PfGW456L13_3966at 4449.461 kb on - strand, within PfGW456L13_3966at 4449.461 kb on - strand, within PfGW456L13_3966at 4449.461 kb on - strand, within PfGW456L13_3966at 4449.461 kb on - strand, within PfGW456L13_3966at 4449.461 kb on - strand, within PfGW456L13_3966at 4449.500 kb on + strand, within PfGW456L13_3966at 4449.501 kb on - strand, within PfGW456L13_3966at 4449.501 kb on - strand, within PfGW456L13_3966at 4449.529 kb on + strand, within PfGW456L13_3966at 4449.619 kb on + strand, within PfGW456L13_3966at 4449.620 kb on - strand, within PfGW456L13_3966at 4449.620 kb on - strand, within PfGW456L13_3966at 4449.620 kb on - strand, within PfGW456L13_3966at 4449.620 kb on - strand, within PfGW456L13_3966at 4449.738 kb on + strand, within PfGW456L13_3966at 4449.769 kb on + strand, within PfGW456L13_3966at 4449.769 kb on + strand, within PfGW456L13_3966at 4449.769 kb on + strand, within PfGW456L13_3966at 4449.770 kb on - strand, within PfGW456L13_3966at 4449.770 kb on - strand, within PfGW456L13_3966at 4449.810 kb on + strand, within PfGW456L13_3966at 4449.811 kb on - strand, within PfGW456L13_3966at 4449.811 kb on - strand, within PfGW456L13_3966at 4449.811 kb on - strand, within PfGW456L13_3966at 4449.811 kb on - strand, within PfGW456L13_3966at 4449.846 kb on + strand, within PfGW456L13_3966at 4449.846 kb on + strand, within PfGW456L13_3966at 4449.881 kb on + strand, within PfGW456L13_3966at 4449.955 kb on + strandat 4449.955 kb on + strandat 4449.956 kb on - strandat 4449.956 kb on - strandat 4450.038 kb on + strandat 4450.039 kb on - strandat 4450.039 kb on - strandat 4450.042 kb on + strandat 4450.042 kb on + strandat 4450.042 kb on + strandat 4450.042 kb on + strandat 4450.042 kb on + strandat 4450.042 kb on + strandat 4450.042 kb on + strandat 4450.043 kb on - strandat 4450.043 kb on - strandat 4450.043 kb on - strandat 4450.043 kb on - strandat 4450.043 kb on - strandat 4450.043 kb on - strandat 4450.043 kb on - strandat 4450.043 kb on - strandat 4450.043 kb on - strandat 4450.043 kb on - strandat 4450.043 kb on - strandat 4450.045 kb on - strandat 4450.203 kb on + strand, within PfGW456L13_3967at 4450.204 kb on - strand, within PfGW456L13_3967at 4450.278 kb on + strand, within PfGW456L13_3967at 4450.279 kb on - strand, within PfGW456L13_3967at 4450.279 kb on - strand, within PfGW456L13_3967at 4450.279 kb on - strand, within PfGW456L13_3967at 4450.293 kb on + strand, within PfGW456L13_3967at 4450.293 kb on + strand, within PfGW456L13_3967at 4450.293 kb on + strand, within PfGW456L13_3967at 4450.294 kb on - strand, within PfGW456L13_3967at 4450.294 kb on - strand, within PfGW456L13_3967at 4450.416 kb on + strand, within PfGW456L13_3967at 4450.416 kb on + strand, within PfGW456L13_3967at 4450.416 kb on + strand, within PfGW456L13_3967at 4450.416 kb on + strand, within PfGW456L13_3967at 4450.416 kb on + strand, within PfGW456L13_3967at 4450.416 kb on + strand, within PfGW456L13_3967at 4450.417 kb on - strand, within PfGW456L13_3967at 4450.417 kb on - strand, within PfGW456L13_3967at 4450.417 kb on - strand, within PfGW456L13_3967at 4450.417 kb on - strand, within PfGW456L13_3967at 4450.417 kb on - strand, within PfGW456L13_3967at 4450.417 kb on - strand, within PfGW456L13_3967at 4450.417 kb on - strand, within PfGW456L13_3967at 4450.446 kb on + strand, within PfGW456L13_3967at 4450.447 kb on - strand, within PfGW456L13_3967at 4450.447 kb on - strand, within PfGW456L13_3967at 4450.447 kb on - strand, within PfGW456L13_3967at 4450.447 kb on - strand, within PfGW456L13_3967at 4450.447 kb on - strand, within PfGW456L13_3967at 4450.504 kb on + strand, within PfGW456L13_3967at 4450.504 kb on + strand, within PfGW456L13_3967at 4450.530 kb on + strand, within PfGW456L13_3967at 4450.530 kb on + strandat 4450.531 kb on - strand, within PfGW456L13_3967at 4450.572 kb on + strand, within PfGW456L13_3967at 4450.572 kb on + strand, within PfGW456L13_3967at 4450.573 kb on - strand, within PfGW456L13_3967at 4450.573 kb on - strand, within PfGW456L13_3967at 4450.573 kb on - strand, within PfGW456L13_3967at 4450.621 kb on + strand, within PfGW456L13_3967at 4451.009 kb on - strandat 4451.211 kb on + strandat 4451.211 kb on + strandat 4451.211 kb on + strandat 4451.545 kb on + strand, within PfGW456L13_3968at 4451.595 kb on - strandat 4451.609 kb on + strandat 4451.669 kb on + strandat 4451.670 kb on - strandat 4451.670 kb on - strandat 4451.756 kb on + strand, within PfGW456L13_3969at 4451.802 kb on + strand, within PfGW456L13_3969at 4451.803 kb on - strand, within PfGW456L13_3969at 4451.855 kb on + strand, within PfGW456L13_3969at 4451.856 kb on - strand, within PfGW456L13_3969

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,449,406 + PfGW456L13_3966 0.30 -2.2
4,449,407 - PfGW456L13_3966 0.30 +0.9
4,449,460 + PfGW456L13_3966 0.36 -1.4
4,449,460 + PfGW456L13_3966 0.36 +0.3
4,449,460 + PfGW456L13_3966 0.36 -1.4
4,449,460 + PfGW456L13_3966 0.36 -0.2
4,449,460 + PfGW456L13_3966 0.36 +0.2
4,449,461 - PfGW456L13_3966 0.36 -0.3
4,449,461 - PfGW456L13_3966 0.36 +0.6
4,449,461 - PfGW456L13_3966 0.36 -0.8
4,449,461 - PfGW456L13_3966 0.36 +1.9
4,449,461 - PfGW456L13_3966 0.36 -1.7
4,449,461 - PfGW456L13_3966 0.36 -0.4
4,449,461 - PfGW456L13_3966 0.36 +0.0
4,449,461 - PfGW456L13_3966 0.36 +0.6
4,449,500 + PfGW456L13_3966 0.41 -0.8
4,449,501 - PfGW456L13_3966 0.41 +2.0
4,449,501 - PfGW456L13_3966 0.41 -0.4
4,449,529 + PfGW456L13_3966 0.45 -1.4
4,449,619 + PfGW456L13_3966 0.55 -1.4
4,449,620 - PfGW456L13_3966 0.55 -0.2
4,449,620 - PfGW456L13_3966 0.55 -0.7
4,449,620 - PfGW456L13_3966 0.55 -1.9
4,449,620 - PfGW456L13_3966 0.55 -0.7
4,449,738 + PfGW456L13_3966 0.70 -0.7
4,449,769 + PfGW456L13_3966 0.73 +0.5
4,449,769 + PfGW456L13_3966 0.73 -1.5
4,449,769 + PfGW456L13_3966 0.73 -0.4
4,449,770 - PfGW456L13_3966 0.74 -1.4
4,449,770 - PfGW456L13_3966 0.74 +0.3
4,449,810 + PfGW456L13_3966 0.78 -1.2
4,449,811 - PfGW456L13_3966 0.78 -0.4
4,449,811 - PfGW456L13_3966 0.78 -1.2
4,449,811 - PfGW456L13_3966 0.78 +0.7
4,449,811 - PfGW456L13_3966 0.78 -1.1
4,449,846 + PfGW456L13_3966 0.83 +0.5
4,449,846 + PfGW456L13_3966 0.83 +0.5
4,449,881 + PfGW456L13_3966 0.87 -0.4
4,449,955 + -1.3
4,449,955 + +0.9
4,449,956 - +0.3
4,449,956 - -0.3
4,450,038 + +0.9
4,450,039 - +1.3
4,450,039 - +1.4
4,450,042 + -1.3
4,450,042 + -0.9
4,450,042 + -0.7
4,450,042 + +0.0
4,450,042 + +0.9
4,450,042 + -0.3
4,450,042 + +0.8
4,450,043 - +1.4
4,450,043 - +1.1
4,450,043 - -1.2
4,450,043 - +0.8
4,450,043 - -0.6
4,450,043 - -0.4
4,450,043 - -0.9
4,450,043 - -0.4
4,450,043 - -2.2
4,450,043 - -0.3
4,450,043 - -0.5
4,450,045 - +0.5
4,450,203 + PfGW456L13_3967 0.13 -0.2
4,450,204 - PfGW456L13_3967 0.13 -2.4
4,450,278 + PfGW456L13_3967 0.22 +0.2
4,450,279 - PfGW456L13_3967 0.22 -1.1
4,450,279 - PfGW456L13_3967 0.22 +0.8
4,450,279 - PfGW456L13_3967 0.22 -1.2
4,450,293 + PfGW456L13_3967 0.24 +0.8
4,450,293 + PfGW456L13_3967 0.24 -1.4
4,450,293 + PfGW456L13_3967 0.24 -1.2
4,450,294 - PfGW456L13_3967 0.24 +1.2
4,450,294 - PfGW456L13_3967 0.24 -0.1
4,450,416 + PfGW456L13_3967 0.39 -0.4
4,450,416 + PfGW456L13_3967 0.39 +0.9
4,450,416 + PfGW456L13_3967 0.39 +0.4
4,450,416 + PfGW456L13_3967 0.39 +0.3
4,450,416 + PfGW456L13_3967 0.39 +0.4
4,450,416 + PfGW456L13_3967 0.39 -1.1
4,450,417 - PfGW456L13_3967 0.39 -0.2
4,450,417 - PfGW456L13_3967 0.39 -0.9
4,450,417 - PfGW456L13_3967 0.39 -0.7
4,450,417 - PfGW456L13_3967 0.39 +0.0
4,450,417 - PfGW456L13_3967 0.39 -1.6
4,450,417 - PfGW456L13_3967 0.39 -1.4
4,450,417 - PfGW456L13_3967 0.39 -0.5
4,450,446 + PfGW456L13_3967 0.43 -1.1
4,450,447 - PfGW456L13_3967 0.43 -1.3
4,450,447 - PfGW456L13_3967 0.43 -1.1
4,450,447 - PfGW456L13_3967 0.43 -0.1
4,450,447 - PfGW456L13_3967 0.43 -1.9
4,450,447 - PfGW456L13_3967 0.43 -0.7
4,450,504 + PfGW456L13_3967 0.50 +0.9
4,450,504 + PfGW456L13_3967 0.50 +0.6
4,450,530 + PfGW456L13_3967 0.54 -0.1
4,450,530 + +1.2
4,450,531 - PfGW456L13_3967 0.54 -1.8
4,450,572 + PfGW456L13_3967 0.59 +0.4
4,450,572 + PfGW456L13_3967 0.59 -0.1
4,450,573 - PfGW456L13_3967 0.59 +0.3
4,450,573 - PfGW456L13_3967 0.59 -1.2
4,450,573 - PfGW456L13_3967 0.59 +1.4
4,450,621 + PfGW456L13_3967 0.65 -0.3
4,451,009 - -1.7
4,451,211 + -1.4
4,451,211 + -0.7
4,451,211 + -0.3
4,451,545 + PfGW456L13_3968 0.76 -1.3
4,451,595 - +0.3
4,451,609 + -0.8
4,451,669 + -0.5
4,451,670 - -1.3
4,451,670 - +0.5
4,451,756 + PfGW456L13_3969 0.11 +1.7
4,451,802 + PfGW456L13_3969 0.14 +0.8
4,451,803 - PfGW456L13_3969 0.14 -0.8
4,451,855 + PfGW456L13_3969 0.18 +1.7
4,451,856 - PfGW456L13_3969 0.18 +0.7

Or see this region's nucleotide sequence