Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1935 and PfGW456L13_1936 overlap by 16 nucleotides PfGW456L13_1936 and PfGW456L13_1937 are separated by 204 nucleotides PfGW456L13_1937 and PfGW456L13_1938 are separated by 90 nucleotides PfGW456L13_1938 and PfGW456L13_1939 are separated by 124 nucleotides
PfGW456L13_1935 - RNA polymerase sigma-70 factor, ECF subfamily, at 2,126,263 to 2,127,072
_1935
PfGW456L13_1936 - RNA polymerase sigma-70 factor, ECF subfamily, at 2,127,057 to 2,127,497
_1936
PfGW456L13_1937 - LysR-family transcriptional regulator STM3020, at 2,127,702 to 2,128,556
_1937
PfGW456L13_1938 - FIG00961830: hypothetical protein, at 2,128,647 to 2,129,081
_1938
PfGW456L13_1939 - dTDP-6-deoxy-L-hexose 3-O-methyltransferase, at 2,129,206 to 2,129,928
_1939
Position (kb)
2127
2128
2129 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.820 kb on - strand, within PfGW456L13_1935 at 2126.820 kb on - strand, within PfGW456L13_1935 at 2126.820 kb on - strand, within PfGW456L13_1935 at 2126.820 kb on - strand, within PfGW456L13_1935 at 2126.820 kb on - strand, within PfGW456L13_1935 at 2126.833 kb on + strand, within PfGW456L13_1935 at 2126.833 kb on + strand, within PfGW456L13_1935 at 2126.833 kb on + strand, within PfGW456L13_1935 at 2126.833 kb on + strand, within PfGW456L13_1935 at 2126.834 kb on - strand, within PfGW456L13_1935 at 2126.834 kb on - strand, within PfGW456L13_1935 at 2126.834 kb on - strand, within PfGW456L13_1935 at 2127.129 kb on + strand, within PfGW456L13_1936 at 2127.213 kb on + strand, within PfGW456L13_1936 at 2127.214 kb on - strand, within PfGW456L13_1936 at 2127.349 kb on - strand, within PfGW456L13_1936 at 2127.553 kb on + strand at 2127.553 kb on + strand at 2127.553 kb on + strand at 2127.553 kb on + strand at 2127.554 kb on - strand at 2127.554 kb on - strand at 2127.554 kb on - strand at 2127.560 kb on + strand at 2127.560 kb on + strand at 2127.653 kb on - strand at 2127.821 kb on + strand, within PfGW456L13_1937 at 2127.822 kb on - strand, within PfGW456L13_1937 at 2127.822 kb on - strand, within PfGW456L13_1937 at 2127.905 kb on - strand, within PfGW456L13_1937 at 2127.994 kb on - strand, within PfGW456L13_1937 at 2127.994 kb on - strand, within PfGW456L13_1937 at 2128.252 kb on + strand, within PfGW456L13_1937 at 2128.252 kb on + strand, within PfGW456L13_1937 at 2128.252 kb on + strand at 2128.252 kb on + strand, within PfGW456L13_1937 at 2128.252 kb on + strand, within PfGW456L13_1937 at 2128.252 kb on + strand, within PfGW456L13_1937 at 2128.253 kb on - strand, within PfGW456L13_1937 at 2128.253 kb on - strand, within PfGW456L13_1937 at 2128.253 kb on - strand, within PfGW456L13_1937 at 2128.253 kb on - strand, within PfGW456L13_1937 at 2128.257 kb on - strand, within PfGW456L13_1937 at 2128.580 kb on + strand at 2128.667 kb on + strand at 2128.667 kb on + strand at 2128.676 kb on + strand at 2128.721 kb on + strand, within PfGW456L13_1938 at 2128.826 kb on + strand, within PfGW456L13_1938 at 2128.826 kb on + strand, within PfGW456L13_1938 at 2128.827 kb on - strand, within PfGW456L13_1938 at 2128.827 kb on - strand, within PfGW456L13_1938 at 2128.827 kb on - strand, within PfGW456L13_1938 at 2128.827 kb on - strand, within PfGW456L13_1938 at 2128.827 kb on - strand, within PfGW456L13_1938 at 2129.011 kb on - strand, within PfGW456L13_1938 at 2129.011 kb on - strand, within PfGW456L13_1938 at 2129.011 kb on - strand, within PfGW456L13_1938 at 2129.011 kb on - strand, within PfGW456L13_1938 at 2129.016 kb on + strand, within PfGW456L13_1938 at 2129.016 kb on + strand, within PfGW456L13_1938 at 2129.016 kb on + strand, within PfGW456L13_1938 at 2129.016 kb on + strand, within PfGW456L13_1938 at 2129.016 kb on + strand, within PfGW456L13_1938 at 2129.016 kb on + strand, within PfGW456L13_1938 at 2129.016 kb on + strand, within PfGW456L13_1938 at 2129.017 kb on - strand, within PfGW456L13_1938 at 2129.017 kb on - strand, within PfGW456L13_1938 at 2129.017 kb on - strand, within PfGW456L13_1938 at 2129.017 kb on - strand, within PfGW456L13_1938 at 2129.017 kb on - strand, within PfGW456L13_1938 at 2129.022 kb on + strand, within PfGW456L13_1938 at 2129.023 kb on - strand, within PfGW456L13_1938 at 2129.034 kb on + strand, within PfGW456L13_1938 at 2129.034 kb on + strand at 2129.034 kb on + strand, within PfGW456L13_1938 at 2129.034 kb on + strand, within PfGW456L13_1938 at 2129.034 kb on + strand, within PfGW456L13_1938 at 2129.035 kb on - strand, within PfGW456L13_1938 at 2129.035 kb on - strand, within PfGW456L13_1938 at 2129.035 kb on - strand, within PfGW456L13_1938 at 2129.035 kb on - strand, within PfGW456L13_1938 at 2129.035 kb on - strand, within PfGW456L13_1938 at 2129.035 kb on - strand, within PfGW456L13_1938 at 2129.035 kb on - strand, within PfGW456L13_1938 at 2129.035 kb on - strand, within PfGW456L13_1938 at 2129.220 kb on - strand at 2129.311 kb on - strand, within PfGW456L13_1939 at 2129.357 kb on + strand, within PfGW456L13_1939 at 2129.357 kb on + strand, within PfGW456L13_1939 at 2129.357 kb on + strand, within PfGW456L13_1939 at 2129.357 kb on + strand, within PfGW456L13_1939 at 2129.357 kb on + strand, within PfGW456L13_1939 at 2129.357 kb on + strand, within PfGW456L13_1939 at 2129.357 kb on + strand, within PfGW456L13_1939 at 2129.358 kb on - strand, within PfGW456L13_1939 at 2129.358 kb on - strand, within PfGW456L13_1939 at 2129.358 kb on - strand, within PfGW456L13_1939 at 2129.358 kb on - strand, within PfGW456L13_1939 at 2129.358 kb on - strand, within PfGW456L13_1939 at 2129.397 kb on - strand, within PfGW456L13_1939
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,126,819 + PfGW456L13_1935 0.69 +0.4 2,126,819 + PfGW456L13_1935 0.69 +1.2 2,126,819 + PfGW456L13_1935 0.69 -0.7 2,126,819 + PfGW456L13_1935 0.69 +1.2 2,126,819 + PfGW456L13_1935 0.69 -1.3 2,126,819 + PfGW456L13_1935 0.69 -1.2 2,126,819 + PfGW456L13_1935 0.69 -0.4 2,126,819 + PfGW456L13_1935 0.69 +2.0 2,126,820 - PfGW456L13_1935 0.69 -2.3 2,126,820 - PfGW456L13_1935 0.69 -1.1 2,126,820 - PfGW456L13_1935 0.69 +1.0 2,126,820 - PfGW456L13_1935 0.69 -1.0 2,126,820 - PfGW456L13_1935 0.69 +0.3 2,126,833 + PfGW456L13_1935 0.70 +0.1 2,126,833 + PfGW456L13_1935 0.70 +1.4 2,126,833 + PfGW456L13_1935 0.70 +0.2 2,126,833 + PfGW456L13_1935 0.70 -0.6 2,126,834 - PfGW456L13_1935 0.70 -0.2 2,126,834 - PfGW456L13_1935 0.70 +1.2 2,126,834 - PfGW456L13_1935 0.70 -0.3 2,127,129 + PfGW456L13_1936 0.16 +0.6 2,127,213 + PfGW456L13_1936 0.35 +2.4 2,127,214 - PfGW456L13_1936 0.36 +0.8 2,127,349 - PfGW456L13_1936 0.66 -0.1 2,127,553 + +1.5 2,127,553 + +0.1 2,127,553 + -1.5 2,127,553 + -0.1 2,127,554 - +0.8 2,127,554 - -0.4 2,127,554 - +1.1 2,127,560 + +0.2 2,127,560 + -1.6 2,127,653 - -2.1 2,127,821 + PfGW456L13_1937 0.14 -1.8 2,127,822 - PfGW456L13_1937 0.14 +1.5 2,127,822 - PfGW456L13_1937 0.14 +0.4 2,127,905 - PfGW456L13_1937 0.24 +0.4 2,127,994 - PfGW456L13_1937 0.34 -0.6 2,127,994 - PfGW456L13_1937 0.34 +0.4 2,128,252 + PfGW456L13_1937 0.64 +1.8 2,128,252 + PfGW456L13_1937 0.64 -1.9 2,128,252 + +0.2 2,128,252 + PfGW456L13_1937 0.64 +1.4 2,128,252 + PfGW456L13_1937 0.64 +0.8 2,128,252 + PfGW456L13_1937 0.64 +0.2 2,128,253 - PfGW456L13_1937 0.64 +0.9 2,128,253 - PfGW456L13_1937 0.64 -1.1 2,128,253 - PfGW456L13_1937 0.64 +0.7 2,128,253 - PfGW456L13_1937 0.64 -1.9 2,128,257 - PfGW456L13_1937 0.65 +1.0 2,128,580 + +0.7 2,128,667 + -0.5 2,128,667 + -1.1 2,128,676 + +0.7 2,128,721 + PfGW456L13_1938 0.17 -2.6 2,128,826 + PfGW456L13_1938 0.41 -2.4 2,128,826 + PfGW456L13_1938 0.41 +0.8 2,128,827 - PfGW456L13_1938 0.41 -2.0 2,128,827 - PfGW456L13_1938 0.41 +0.6 2,128,827 - PfGW456L13_1938 0.41 +0.1 2,128,827 - PfGW456L13_1938 0.41 -1.6 2,128,827 - PfGW456L13_1938 0.41 +1.3 2,129,011 - PfGW456L13_1938 0.84 +1.0 2,129,011 - PfGW456L13_1938 0.84 +1.8 2,129,011 - PfGW456L13_1938 0.84 -0.5 2,129,011 - PfGW456L13_1938 0.84 +1.2 2,129,016 + PfGW456L13_1938 0.85 -0.5 2,129,016 + PfGW456L13_1938 0.85 -1.0 2,129,016 + PfGW456L13_1938 0.85 -1.2 2,129,016 + PfGW456L13_1938 0.85 -0.8 2,129,016 + PfGW456L13_1938 0.85 +0.8 2,129,016 + PfGW456L13_1938 0.85 -1.7 2,129,016 + PfGW456L13_1938 0.85 -0.6 2,129,017 - PfGW456L13_1938 0.85 +0.3 2,129,017 - PfGW456L13_1938 0.85 +0.8 2,129,017 - PfGW456L13_1938 0.85 -0.7 2,129,017 - PfGW456L13_1938 0.85 +0.3 2,129,017 - PfGW456L13_1938 0.85 -0.3 2,129,022 + PfGW456L13_1938 0.86 -0.7 2,129,023 - PfGW456L13_1938 0.86 -0.2 2,129,034 + PfGW456L13_1938 0.89 -1.1 2,129,034 + +1.8 2,129,034 + PfGW456L13_1938 0.89 +1.6 2,129,034 + PfGW456L13_1938 0.89 +0.2 2,129,034 + PfGW456L13_1938 0.89 +0.8 2,129,035 - PfGW456L13_1938 0.89 -1.9 2,129,035 - PfGW456L13_1938 0.89 -0.5 2,129,035 - PfGW456L13_1938 0.89 -0.7 2,129,035 - PfGW456L13_1938 0.89 -1.1 2,129,035 - PfGW456L13_1938 0.89 +0.6 2,129,035 - PfGW456L13_1938 0.89 +2.2 2,129,035 - PfGW456L13_1938 0.89 +0.4 2,129,035 - PfGW456L13_1938 0.89 +0.3 2,129,220 - +0.5 2,129,311 - PfGW456L13_1939 0.15 -0.4 2,129,357 + PfGW456L13_1939 0.21 +0.8 2,129,357 + PfGW456L13_1939 0.21 +0.0 2,129,357 + PfGW456L13_1939 0.21 +0.2 2,129,357 + PfGW456L13_1939 0.21 -2.6 2,129,357 + PfGW456L13_1939 0.21 +0.1 2,129,357 + PfGW456L13_1939 0.21 -0.2 2,129,357 + PfGW456L13_1939 0.21 +0.2 2,129,358 - PfGW456L13_1939 0.21 +0.3 2,129,358 - PfGW456L13_1939 0.21 +1.8 2,129,358 - PfGW456L13_1939 0.21 -1.5 2,129,358 - PfGW456L13_1939 0.21 +0.6 2,129,358 - PfGW456L13_1939 0.21 +0.8 2,129,397 - PfGW456L13_1939 0.26 -1.1
Or see this region's nucleotide sequence