Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1937

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1935 and PfGW456L13_1936 overlap by 16 nucleotidesPfGW456L13_1936 and PfGW456L13_1937 are separated by 204 nucleotidesPfGW456L13_1937 and PfGW456L13_1938 are separated by 90 nucleotidesPfGW456L13_1938 and PfGW456L13_1939 are separated by 124 nucleotides PfGW456L13_1935 - RNA polymerase sigma-70 factor, ECF subfamily, at 2,126,263 to 2,127,072 _1935 PfGW456L13_1936 - RNA polymerase sigma-70 factor, ECF subfamily, at 2,127,057 to 2,127,497 _1936 PfGW456L13_1937 - LysR-family transcriptional regulator STM3020, at 2,127,702 to 2,128,556 _1937 PfGW456L13_1938 - FIG00961830: hypothetical protein, at 2,128,647 to 2,129,081 _1938 PfGW456L13_1939 - dTDP-6-deoxy-L-hexose 3-O-methyltransferase, at 2,129,206 to 2,129,928 _1939 Position (kb) 2127 2128 2129Strain fitness (log2 ratio) -2 -1 0 1 2at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.820 kb on - strand, within PfGW456L13_1935at 2126.820 kb on - strand, within PfGW456L13_1935at 2126.820 kb on - strand, within PfGW456L13_1935at 2126.820 kb on - strand, within PfGW456L13_1935at 2126.820 kb on - strand, within PfGW456L13_1935at 2126.833 kb on + strand, within PfGW456L13_1935at 2126.833 kb on + strand, within PfGW456L13_1935at 2126.833 kb on + strand, within PfGW456L13_1935at 2126.833 kb on + strand, within PfGW456L13_1935at 2126.834 kb on - strand, within PfGW456L13_1935at 2126.834 kb on - strand, within PfGW456L13_1935at 2126.834 kb on - strand, within PfGW456L13_1935at 2127.129 kb on + strand, within PfGW456L13_1936at 2127.213 kb on + strand, within PfGW456L13_1936at 2127.214 kb on - strand, within PfGW456L13_1936at 2127.349 kb on - strand, within PfGW456L13_1936at 2127.553 kb on + strandat 2127.553 kb on + strandat 2127.553 kb on + strandat 2127.553 kb on + strandat 2127.554 kb on - strandat 2127.554 kb on - strandat 2127.554 kb on - strandat 2127.560 kb on + strandat 2127.560 kb on + strandat 2127.653 kb on - strandat 2127.821 kb on + strand, within PfGW456L13_1937at 2127.822 kb on - strand, within PfGW456L13_1937at 2127.822 kb on - strand, within PfGW456L13_1937at 2127.905 kb on - strand, within PfGW456L13_1937at 2127.994 kb on - strand, within PfGW456L13_1937at 2127.994 kb on - strand, within PfGW456L13_1937at 2128.252 kb on + strand, within PfGW456L13_1937at 2128.252 kb on + strand, within PfGW456L13_1937at 2128.252 kb on + strandat 2128.252 kb on + strand, within PfGW456L13_1937at 2128.252 kb on + strand, within PfGW456L13_1937at 2128.252 kb on + strand, within PfGW456L13_1937at 2128.253 kb on - strand, within PfGW456L13_1937at 2128.253 kb on - strand, within PfGW456L13_1937at 2128.253 kb on - strand, within PfGW456L13_1937at 2128.253 kb on - strand, within PfGW456L13_1937at 2128.257 kb on - strand, within PfGW456L13_1937at 2128.580 kb on + strandat 2128.667 kb on + strandat 2128.667 kb on + strandat 2128.676 kb on + strandat 2128.721 kb on + strand, within PfGW456L13_1938at 2128.826 kb on + strand, within PfGW456L13_1938at 2128.826 kb on + strand, within PfGW456L13_1938at 2128.827 kb on - strand, within PfGW456L13_1938at 2128.827 kb on - strand, within PfGW456L13_1938at 2128.827 kb on - strand, within PfGW456L13_1938at 2128.827 kb on - strand, within PfGW456L13_1938at 2128.827 kb on - strand, within PfGW456L13_1938at 2129.011 kb on - strand, within PfGW456L13_1938at 2129.011 kb on - strand, within PfGW456L13_1938at 2129.011 kb on - strand, within PfGW456L13_1938at 2129.011 kb on - strand, within PfGW456L13_1938at 2129.016 kb on + strand, within PfGW456L13_1938at 2129.016 kb on + strand, within PfGW456L13_1938at 2129.016 kb on + strand, within PfGW456L13_1938at 2129.016 kb on + strand, within PfGW456L13_1938at 2129.016 kb on + strand, within PfGW456L13_1938at 2129.016 kb on + strand, within PfGW456L13_1938at 2129.016 kb on + strand, within PfGW456L13_1938at 2129.017 kb on - strand, within PfGW456L13_1938at 2129.017 kb on - strand, within PfGW456L13_1938at 2129.017 kb on - strand, within PfGW456L13_1938at 2129.017 kb on - strand, within PfGW456L13_1938at 2129.017 kb on - strand, within PfGW456L13_1938at 2129.022 kb on + strand, within PfGW456L13_1938at 2129.023 kb on - strand, within PfGW456L13_1938at 2129.034 kb on + strand, within PfGW456L13_1938at 2129.034 kb on + strandat 2129.034 kb on + strand, within PfGW456L13_1938at 2129.034 kb on + strand, within PfGW456L13_1938at 2129.034 kb on + strand, within PfGW456L13_1938at 2129.035 kb on - strand, within PfGW456L13_1938at 2129.035 kb on - strand, within PfGW456L13_1938at 2129.035 kb on - strand, within PfGW456L13_1938at 2129.035 kb on - strand, within PfGW456L13_1938at 2129.035 kb on - strand, within PfGW456L13_1938at 2129.035 kb on - strand, within PfGW456L13_1938at 2129.035 kb on - strand, within PfGW456L13_1938at 2129.035 kb on - strand, within PfGW456L13_1938at 2129.220 kb on - strandat 2129.311 kb on - strand, within PfGW456L13_1939at 2129.357 kb on + strand, within PfGW456L13_1939at 2129.357 kb on + strand, within PfGW456L13_1939at 2129.357 kb on + strand, within PfGW456L13_1939at 2129.357 kb on + strand, within PfGW456L13_1939at 2129.357 kb on + strand, within PfGW456L13_1939at 2129.357 kb on + strand, within PfGW456L13_1939at 2129.357 kb on + strand, within PfGW456L13_1939at 2129.358 kb on - strand, within PfGW456L13_1939at 2129.358 kb on - strand, within PfGW456L13_1939at 2129.358 kb on - strand, within PfGW456L13_1939at 2129.358 kb on - strand, within PfGW456L13_1939at 2129.358 kb on - strand, within PfGW456L13_1939at 2129.397 kb on - strand, within PfGW456L13_1939

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,126,819 + PfGW456L13_1935 0.69 +0.4
2,126,819 + PfGW456L13_1935 0.69 +1.2
2,126,819 + PfGW456L13_1935 0.69 -0.7
2,126,819 + PfGW456L13_1935 0.69 +1.2
2,126,819 + PfGW456L13_1935 0.69 -1.3
2,126,819 + PfGW456L13_1935 0.69 -1.2
2,126,819 + PfGW456L13_1935 0.69 -0.4
2,126,819 + PfGW456L13_1935 0.69 +2.0
2,126,820 - PfGW456L13_1935 0.69 -2.3
2,126,820 - PfGW456L13_1935 0.69 -1.1
2,126,820 - PfGW456L13_1935 0.69 +1.0
2,126,820 - PfGW456L13_1935 0.69 -1.0
2,126,820 - PfGW456L13_1935 0.69 +0.3
2,126,833 + PfGW456L13_1935 0.70 +0.1
2,126,833 + PfGW456L13_1935 0.70 +1.4
2,126,833 + PfGW456L13_1935 0.70 +0.2
2,126,833 + PfGW456L13_1935 0.70 -0.6
2,126,834 - PfGW456L13_1935 0.70 -0.2
2,126,834 - PfGW456L13_1935 0.70 +1.2
2,126,834 - PfGW456L13_1935 0.70 -0.3
2,127,129 + PfGW456L13_1936 0.16 +0.6
2,127,213 + PfGW456L13_1936 0.35 +2.4
2,127,214 - PfGW456L13_1936 0.36 +0.8
2,127,349 - PfGW456L13_1936 0.66 -0.1
2,127,553 + +1.5
2,127,553 + +0.1
2,127,553 + -1.5
2,127,553 + -0.1
2,127,554 - +0.8
2,127,554 - -0.4
2,127,554 - +1.1
2,127,560 + +0.2
2,127,560 + -1.6
2,127,653 - -2.1
2,127,821 + PfGW456L13_1937 0.14 -1.8
2,127,822 - PfGW456L13_1937 0.14 +1.5
2,127,822 - PfGW456L13_1937 0.14 +0.4
2,127,905 - PfGW456L13_1937 0.24 +0.4
2,127,994 - PfGW456L13_1937 0.34 -0.6
2,127,994 - PfGW456L13_1937 0.34 +0.4
2,128,252 + PfGW456L13_1937 0.64 +1.8
2,128,252 + PfGW456L13_1937 0.64 -1.9
2,128,252 + +0.2
2,128,252 + PfGW456L13_1937 0.64 +1.4
2,128,252 + PfGW456L13_1937 0.64 +0.8
2,128,252 + PfGW456L13_1937 0.64 +0.2
2,128,253 - PfGW456L13_1937 0.64 +0.9
2,128,253 - PfGW456L13_1937 0.64 -1.1
2,128,253 - PfGW456L13_1937 0.64 +0.7
2,128,253 - PfGW456L13_1937 0.64 -1.9
2,128,257 - PfGW456L13_1937 0.65 +1.0
2,128,580 + +0.7
2,128,667 + -0.5
2,128,667 + -1.1
2,128,676 + +0.7
2,128,721 + PfGW456L13_1938 0.17 -2.6
2,128,826 + PfGW456L13_1938 0.41 -2.4
2,128,826 + PfGW456L13_1938 0.41 +0.8
2,128,827 - PfGW456L13_1938 0.41 -2.0
2,128,827 - PfGW456L13_1938 0.41 +0.6
2,128,827 - PfGW456L13_1938 0.41 +0.1
2,128,827 - PfGW456L13_1938 0.41 -1.6
2,128,827 - PfGW456L13_1938 0.41 +1.3
2,129,011 - PfGW456L13_1938 0.84 +1.0
2,129,011 - PfGW456L13_1938 0.84 +1.8
2,129,011 - PfGW456L13_1938 0.84 -0.5
2,129,011 - PfGW456L13_1938 0.84 +1.2
2,129,016 + PfGW456L13_1938 0.85 -0.5
2,129,016 + PfGW456L13_1938 0.85 -1.0
2,129,016 + PfGW456L13_1938 0.85 -1.2
2,129,016 + PfGW456L13_1938 0.85 -0.8
2,129,016 + PfGW456L13_1938 0.85 +0.8
2,129,016 + PfGW456L13_1938 0.85 -1.7
2,129,016 + PfGW456L13_1938 0.85 -0.6
2,129,017 - PfGW456L13_1938 0.85 +0.3
2,129,017 - PfGW456L13_1938 0.85 +0.8
2,129,017 - PfGW456L13_1938 0.85 -0.7
2,129,017 - PfGW456L13_1938 0.85 +0.3
2,129,017 - PfGW456L13_1938 0.85 -0.3
2,129,022 + PfGW456L13_1938 0.86 -0.7
2,129,023 - PfGW456L13_1938 0.86 -0.2
2,129,034 + PfGW456L13_1938 0.89 -1.1
2,129,034 + +1.8
2,129,034 + PfGW456L13_1938 0.89 +1.6
2,129,034 + PfGW456L13_1938 0.89 +0.2
2,129,034 + PfGW456L13_1938 0.89 +0.8
2,129,035 - PfGW456L13_1938 0.89 -1.9
2,129,035 - PfGW456L13_1938 0.89 -0.5
2,129,035 - PfGW456L13_1938 0.89 -0.7
2,129,035 - PfGW456L13_1938 0.89 -1.1
2,129,035 - PfGW456L13_1938 0.89 +0.6
2,129,035 - PfGW456L13_1938 0.89 +2.2
2,129,035 - PfGW456L13_1938 0.89 +0.4
2,129,035 - PfGW456L13_1938 0.89 +0.3
2,129,220 - +0.5
2,129,311 - PfGW456L13_1939 0.15 -0.4
2,129,357 + PfGW456L13_1939 0.21 +0.8
2,129,357 + PfGW456L13_1939 0.21 +0.0
2,129,357 + PfGW456L13_1939 0.21 +0.2
2,129,357 + PfGW456L13_1939 0.21 -2.6
2,129,357 + PfGW456L13_1939 0.21 +0.1
2,129,357 + PfGW456L13_1939 0.21 -0.2
2,129,357 + PfGW456L13_1939 0.21 +0.2
2,129,358 - PfGW456L13_1939 0.21 +0.3
2,129,358 - PfGW456L13_1939 0.21 +1.8
2,129,358 - PfGW456L13_1939 0.21 -1.5
2,129,358 - PfGW456L13_1939 0.21 +0.6
2,129,358 - PfGW456L13_1939 0.21 +0.8
2,129,397 - PfGW456L13_1939 0.26 -1.1

Or see this region's nucleotide sequence