Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_182

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_180 and PfGW456L13_181 are separated by 88 nucleotidesPfGW456L13_181 and PfGW456L13_182 overlap by 10 nucleotidesPfGW456L13_182 and PfGW456L13_183 are separated by 12 nucleotidesPfGW456L13_183 and PfGW456L13_184 are separated by 86 nucleotidesPfGW456L13_184 and PfGW456L13_185 overlap by 32 nucleotides PfGW456L13_180 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 207,057 to 207,896 _180 PfGW456L13_181 - FIG074102: hypothetical protein, at 207,985 to 208,437 _181 PfGW456L13_182 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 208,428 to 209,045 _182 PfGW456L13_183 - hypothetical protein, at 209,058 to 209,183 _183 PfGW456L13_184 - lipoprotein, putative, at 209,270 to 210,016 _184 PfGW456L13_185 - Predicted hydroxymethylpyrimidine transporter CytX, at 209,985 to 211,277 _185 Position (kb) 208 209 210Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 207.906 kb on + strandat 207.906 kb on + strandat 207.907 kb on - strandat 207.907 kb on - strandat 207.907 kb on - strandat 207.919 kb on + strandat 207.919 kb on + strandat 207.919 kb on + strandat 207.920 kb on - strandat 207.920 kb on - strandat 207.920 kb on - strandat 207.920 kb on - strandat 207.920 kb on - strandat 207.920 kb on - strandat 207.987 kb on - strandat 207.987 kb on - strandat 207.991 kb on + strandat 207.992 kb on - strandat 207.992 kb on - strandat 208.002 kb on - strandat 208.002 kb on - strandat 208.002 kb on - strandat 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.166 kb on + strand, within PfGW456L13_181at 208.166 kb on + strand, within PfGW456L13_181at 208.167 kb on - strand, within PfGW456L13_181at 208.241 kb on + strand, within PfGW456L13_181at 208.241 kb on + strand, within PfGW456L13_181at 208.242 kb on - strand, within PfGW456L13_181at 208.364 kb on + strand, within PfGW456L13_181at 208.364 kb on + strand, within PfGW456L13_181at 208.429 kb on + strandat 208.430 kb on - strandat 208.430 kb on - strandat 208.608 kb on - strand, within PfGW456L13_182at 208.627 kb on + strand, within PfGW456L13_182at 208.627 kb on + strand, within PfGW456L13_182at 208.628 kb on - strand, within PfGW456L13_182at 208.628 kb on - strand, within PfGW456L13_182at 208.669 kb on + strand, within PfGW456L13_182at 208.669 kb on + strand, within PfGW456L13_182at 208.669 kb on + strand, within PfGW456L13_182at 208.670 kb on - strand, within PfGW456L13_182at 208.864 kb on + strand, within PfGW456L13_182at 208.864 kb on + strand, within PfGW456L13_182at 208.864 kb on + strand, within PfGW456L13_182at 208.878 kb on + strand, within PfGW456L13_182at 208.879 kb on - strand, within PfGW456L13_182at 208.879 kb on - strand, within PfGW456L13_182at 208.972 kb on + strand, within PfGW456L13_182at 208.972 kb on + strand, within PfGW456L13_182at 208.973 kb on - strand, within PfGW456L13_182at 208.973 kb on - strand, within PfGW456L13_182at 208.984 kb on + strandat 209.050 kb on - strandat 209.060 kb on - strandat 209.115 kb on + strand, within PfGW456L13_183at 209.186 kb on + strandat 209.186 kb on + strandat 209.187 kb on - strandat 209.187 kb on - strandat 209.190 kb on + strandat 209.190 kb on + strandat 209.190 kb on + strandat 209.190 kb on + strandat 209.348 kb on + strand, within PfGW456L13_184at 209.348 kb on + strand, within PfGW456L13_184at 209.348 kb on + strand, within PfGW456L13_184at 209.349 kb on - strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.592 kb on - strand, within PfGW456L13_184at 209.592 kb on - strand, within PfGW456L13_184at 209.592 kb on - strand, within PfGW456L13_184at 209.592 kb on - strand, within PfGW456L13_184at 209.607 kb on + strand, within PfGW456L13_184at 209.607 kb on + strand, within PfGW456L13_184at 209.607 kb on + strand, within PfGW456L13_184at 209.608 kb on - strand, within PfGW456L13_184at 209.608 kb on - strand, within PfGW456L13_184at 209.608 kb on - strand, within PfGW456L13_184at 209.608 kb on - strand, within PfGW456L13_184at 209.651 kb on + strand, within PfGW456L13_184at 209.651 kb on + strand, within PfGW456L13_184at 209.651 kb on + strand, within PfGW456L13_184at 209.651 kb on + strand, within PfGW456L13_184at 209.651 kb on + strand, within PfGW456L13_184at 209.702 kb on + strand, within PfGW456L13_184at 209.703 kb on - strand, within PfGW456L13_184at 209.703 kb on - strand, within PfGW456L13_184at 209.703 kb on - strand, within PfGW456L13_184at 209.703 kb on - strand, within PfGW456L13_184at 209.703 kb on - strand, within PfGW456L13_184at 209.719 kb on + strand, within PfGW456L13_184at 209.719 kb on + strand, within PfGW456L13_184at 209.719 kb on + strand, within PfGW456L13_184at 209.719 kb on + strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.885 kb on + strand, within PfGW456L13_184at 209.907 kb on - strand, within PfGW456L13_184at 210.011 kb on - strandat 210.033 kb on + strandat 210.033 kb on + strandat 210.033 kb on + strandat 210.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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207,906 + -0.6
207,906 + +0.1
207,907 - -1.3
207,907 - -0.9
207,907 - -0.8
207,919 + +1.0
207,919 + -0.6
207,919 + -0.6
207,920 - -1.1
207,920 - -0.3
207,920 - +0.4
207,920 - +1.7
207,920 - -0.5
207,920 - -1.5
207,987 - +1.1
207,987 - +0.8
207,991 + -1.5
207,992 - +0.9
207,992 - -0.6
208,002 - +1.0
208,002 - -1.1
208,002 - -0.7
208,103 + PfGW456L13_181 0.26 +1.3
208,103 + PfGW456L13_181 0.26 -1.2
208,103 + PfGW456L13_181 0.26 -0.3
208,103 + PfGW456L13_181 0.26 -0.6
208,103 + PfGW456L13_181 0.26 -0.3
208,103 + PfGW456L13_181 0.26 +0.1
208,103 + PfGW456L13_181 0.26 +0.6
208,103 + PfGW456L13_181 0.26 +1.4
208,103 + PfGW456L13_181 0.26 +2.4
208,104 - PfGW456L13_181 0.26 +2.4
208,104 - PfGW456L13_181 0.26 -0.4
208,104 - PfGW456L13_181 0.26 -0.5
208,104 - PfGW456L13_181 0.26 +0.5
208,104 - PfGW456L13_181 0.26 +0.1
208,104 - PfGW456L13_181 0.26 -1.4
208,104 - PfGW456L13_181 0.26 -1.1
208,104 - PfGW456L13_181 0.26 -2.3
208,166 + PfGW456L13_181 0.40 -1.8
208,166 + PfGW456L13_181 0.40 -0.9
208,167 - PfGW456L13_181 0.40 +0.1
208,241 + PfGW456L13_181 0.57 -0.7
208,241 + PfGW456L13_181 0.57 -1.2
208,242 - PfGW456L13_181 0.57 -0.5
208,364 + PfGW456L13_181 0.84 +1.9
208,364 + PfGW456L13_181 0.84 -0.6
208,429 + +0.0
208,430 - +1.4
208,430 - -2.1
208,608 - PfGW456L13_182 0.29 -0.8
208,627 + PfGW456L13_182 0.32 -1.1
208,627 + PfGW456L13_182 0.32 +1.0
208,628 - PfGW456L13_182 0.32 +0.7
208,628 - PfGW456L13_182 0.32 +0.0
208,669 + PfGW456L13_182 0.39 -0.3
208,669 + PfGW456L13_182 0.39 +0.7
208,669 + PfGW456L13_182 0.39 +0.3
208,670 - PfGW456L13_182 0.39 +0.4
208,864 + PfGW456L13_182 0.71 +1.0
208,864 + PfGW456L13_182 0.71 +1.3
208,864 + PfGW456L13_182 0.71 -0.6
208,878 + PfGW456L13_182 0.73 +0.0
208,879 - PfGW456L13_182 0.73 +0.6
208,879 - PfGW456L13_182 0.73 -2.2
208,972 + PfGW456L13_182 0.88 +0.3
208,972 + PfGW456L13_182 0.88 -0.9
208,973 - PfGW456L13_182 0.88 +1.2
208,973 - PfGW456L13_182 0.88 -0.2
208,984 + +0.0
209,050 - +1.1
209,060 - -0.1
209,115 + PfGW456L13_183 0.45 -0.6
209,186 + -1.3
209,186 + -0.1
209,187 - -0.8
209,187 - -2.1
209,190 + -1.2
209,190 + -0.0
209,190 + -0.6
209,190 + -2.1
209,348 + PfGW456L13_184 0.10 -0.3
209,348 + PfGW456L13_184 0.10 +0.2
209,348 + PfGW456L13_184 0.10 -0.7
209,349 - PfGW456L13_184 0.11 +0.6
209,591 + PfGW456L13_184 0.43 -0.6
209,591 + PfGW456L13_184 0.43 -1.1
209,591 + PfGW456L13_184 0.43 -1.9
209,591 + PfGW456L13_184 0.43 -0.9
209,591 + PfGW456L13_184 0.43 +2.0
209,591 + PfGW456L13_184 0.43 -0.2
209,591 + PfGW456L13_184 0.43 -0.5
209,592 - PfGW456L13_184 0.43 +0.3
209,592 - PfGW456L13_184 0.43 +0.3
209,592 - PfGW456L13_184 0.43 +0.3
209,592 - PfGW456L13_184 0.43 -1.3
209,607 + PfGW456L13_184 0.45 -0.7
209,607 + PfGW456L13_184 0.45 -1.4
209,607 + PfGW456L13_184 0.45 -1.7
209,608 - PfGW456L13_184 0.45 -0.4
209,608 - PfGW456L13_184 0.45 -0.2
209,608 - PfGW456L13_184 0.45 -0.7
209,608 - PfGW456L13_184 0.45 +0.0
209,651 + PfGW456L13_184 0.51 -0.2
209,651 + PfGW456L13_184 0.51 -2.2
209,651 + PfGW456L13_184 0.51 -1.3
209,651 + PfGW456L13_184 0.51 -2.4
209,651 + PfGW456L13_184 0.51 +0.7
209,702 + PfGW456L13_184 0.58 -1.4
209,703 - PfGW456L13_184 0.58 -0.6
209,703 - PfGW456L13_184 0.58 +0.7
209,703 - PfGW456L13_184 0.58 +0.2
209,703 - PfGW456L13_184 0.58 +0.9
209,703 - PfGW456L13_184 0.58 -1.0
209,719 + PfGW456L13_184 0.60 -0.4
209,719 + PfGW456L13_184 0.60 +0.1
209,719 + PfGW456L13_184 0.60 +0.2
209,719 + PfGW456L13_184 0.60 +0.0
209,720 - PfGW456L13_184 0.60 -0.2
209,720 - PfGW456L13_184 0.60 +0.7
209,720 - PfGW456L13_184 0.60 -0.0
209,720 - PfGW456L13_184 0.60 +3.0
209,720 - PfGW456L13_184 0.60 -2.8
209,720 - PfGW456L13_184 0.60 +0.5
209,720 - PfGW456L13_184 0.60 -0.6
209,720 - PfGW456L13_184 0.60 -1.9
209,885 + PfGW456L13_184 0.82 +0.1
209,907 - PfGW456L13_184 0.85 -1.1
210,011 - +1.0
210,033 + +0.0
210,033 + +0.7
210,033 + +0.0
210,034 - -1.1

Or see this region's nucleotide sequence