Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1504 and PfGW456L13_1505 are separated by 71 nucleotides PfGW456L13_1505 and PfGW456L13_1506 are separated by 35 nucleotides PfGW456L13_1506 and PfGW456L13_1507 overlap by 4 nucleotides PfGW456L13_1507 and PfGW456L13_1508 are separated by 8 nucleotides
PfGW456L13_1504 - Transcriptional regulator, LysR family, at 1,655,147 to 1,656,079
_1504
PfGW456L13_1505 - FIG028593: membrane protein, at 1,656,151 to 1,656,840
_1505
PfGW456L13_1506 - FIG003276: zinc-binding protein, at 1,656,876 to 1,657,076
_1506
PfGW456L13_1507 - Dephospho-CoA kinase (EC 2.7.1.24), at 1,657,073 to 1,657,684
_1507
PfGW456L13_1508 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 1,657,693 to 1,658,565
_1508
Position (kb)
1656
1657
1658 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1655.899 kb on + strand, within PfGW456L13_1504 at 1655.916 kb on + strand, within PfGW456L13_1504 at 1655.948 kb on + strand, within PfGW456L13_1504 at 1655.948 kb on + strand, within PfGW456L13_1504 at 1655.948 kb on + strand, within PfGW456L13_1504 at 1655.948 kb on + strand, within PfGW456L13_1504 at 1655.948 kb on + strand, within PfGW456L13_1504 at 1655.949 kb on - strand, within PfGW456L13_1504 at 1655.949 kb on - strand, within PfGW456L13_1504 at 1655.949 kb on - strand, within PfGW456L13_1504 at 1655.957 kb on + strand, within PfGW456L13_1504 at 1655.958 kb on - strand, within PfGW456L13_1504 at 1655.958 kb on - strand, within PfGW456L13_1504 at 1656.106 kb on + strand at 1656.106 kb on + strand at 1656.106 kb on + strand at 1656.107 kb on - strand at 1656.107 kb on - strand at 1656.107 kb on - strand at 1656.147 kb on - strand at 1656.205 kb on + strand at 1656.205 kb on + strand at 1656.205 kb on + strand at 1656.205 kb on + strand at 1656.205 kb on + strand at 1656.205 kb on + strand at 1656.205 kb on + strand at 1656.205 kb on + strand at 1656.205 kb on + strand at 1656.206 kb on - strand at 1656.206 kb on - strand at 1656.206 kb on - strand at 1656.206 kb on - strand at 1656.352 kb on + strand, within PfGW456L13_1505 at 1656.353 kb on - strand, within PfGW456L13_1505 at 1656.568 kb on + strand, within PfGW456L13_1505 at 1656.568 kb on + strand, within PfGW456L13_1505 at 1656.568 kb on + strand, within PfGW456L13_1505 at 1656.568 kb on + strand, within PfGW456L13_1505 at 1656.568 kb on + strand, within PfGW456L13_1505 at 1656.568 kb on + strand, within PfGW456L13_1505 at 1656.568 kb on + strand, within PfGW456L13_1505 at 1656.568 kb on + strand, within PfGW456L13_1505 at 1656.568 kb on + strand, within PfGW456L13_1505 at 1656.569 kb on - strand, within PfGW456L13_1505 at 1656.569 kb on - strand, within PfGW456L13_1505 at 1656.569 kb on - strand, within PfGW456L13_1505 at 1656.569 kb on - strand, within PfGW456L13_1505 at 1656.569 kb on - strand, within PfGW456L13_1505 at 1656.569 kb on - strand, within PfGW456L13_1505 at 1656.569 kb on - strand, within PfGW456L13_1505 at 1656.569 kb on - strand, within PfGW456L13_1505 at 1656.570 kb on + strand, within PfGW456L13_1505 at 1656.570 kb on + strand, within PfGW456L13_1505 at 1656.571 kb on - strand, within PfGW456L13_1505 at 1656.571 kb on - strand, within PfGW456L13_1505 at 1656.571 kb on - strand, within PfGW456L13_1505 at 1656.641 kb on + strand, within PfGW456L13_1505 at 1656.641 kb on + strand, within PfGW456L13_1505 at 1656.671 kb on - strand, within PfGW456L13_1505 at 1656.694 kb on + strand, within PfGW456L13_1505 at 1656.695 kb on - strand, within PfGW456L13_1505 at 1656.695 kb on - strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.698 kb on + strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.699 kb on - strand, within PfGW456L13_1505 at 1656.799 kb on + strand at 1656.799 kb on + strand at 1656.799 kb on + strand at 1657.691 kb on - strand at 1657.719 kb on - strand at 1657.719 kb on - strand at 1657.730 kb on - strand at 1657.730 kb on - strand at 1657.775 kb on + strand at 1657.775 kb on + strand at 1657.776 kb on - strand at 1657.997 kb on + strand, within PfGW456L13_1508
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,655,899 + PfGW456L13_1504 0.81 -1.9 1,655,916 + PfGW456L13_1504 0.82 +0.6 1,655,948 + PfGW456L13_1504 0.86 -2.3 1,655,948 + PfGW456L13_1504 0.86 +0.4 1,655,948 + PfGW456L13_1504 0.86 -0.5 1,655,948 + PfGW456L13_1504 0.86 +1.2 1,655,948 + PfGW456L13_1504 0.86 +0.8 1,655,949 - PfGW456L13_1504 0.86 -0.4 1,655,949 - PfGW456L13_1504 0.86 -0.3 1,655,949 - PfGW456L13_1504 0.86 +1.1 1,655,957 + PfGW456L13_1504 0.87 +0.0 1,655,958 - PfGW456L13_1504 0.87 +1.0 1,655,958 - PfGW456L13_1504 0.87 -0.2 1,656,106 + +1.0 1,656,106 + -1.5 1,656,106 + +0.2 1,656,107 - -1.0 1,656,107 - +0.6 1,656,107 - +0.4 1,656,147 - +0.4 1,656,205 + -1.7 1,656,205 + -1.4 1,656,205 + +0.7 1,656,205 + +0.8 1,656,205 + +1.8 1,656,205 + -1.5 1,656,205 + -2.0 1,656,205 + +0.6 1,656,205 + -1.9 1,656,206 - +0.6 1,656,206 - -0.4 1,656,206 - -0.8 1,656,206 - +0.2 1,656,352 + PfGW456L13_1505 0.29 +1.0 1,656,353 - PfGW456L13_1505 0.29 +0.9 1,656,568 + PfGW456L13_1505 0.60 -1.7 1,656,568 + PfGW456L13_1505 0.60 -1.2 1,656,568 + PfGW456L13_1505 0.60 +0.8 1,656,568 + PfGW456L13_1505 0.60 -1.2 1,656,568 + PfGW456L13_1505 0.60 -0.4 1,656,568 + PfGW456L13_1505 0.60 -0.6 1,656,568 + PfGW456L13_1505 0.60 -1.6 1,656,568 + PfGW456L13_1505 0.60 +0.1 1,656,568 + PfGW456L13_1505 0.60 -1.7 1,656,569 - PfGW456L13_1505 0.61 -1.0 1,656,569 - PfGW456L13_1505 0.61 -0.1 1,656,569 - PfGW456L13_1505 0.61 +0.0 1,656,569 - PfGW456L13_1505 0.61 -1.0 1,656,569 - PfGW456L13_1505 0.61 -0.5 1,656,569 - PfGW456L13_1505 0.61 +0.3 1,656,569 - PfGW456L13_1505 0.61 +0.4 1,656,569 - PfGW456L13_1505 0.61 +0.7 1,656,570 + PfGW456L13_1505 0.61 -1.7 1,656,570 + PfGW456L13_1505 0.61 -0.4 1,656,571 - PfGW456L13_1505 0.61 +1.1 1,656,571 - PfGW456L13_1505 0.61 +0.1 1,656,571 - PfGW456L13_1505 0.61 -1.1 1,656,641 + PfGW456L13_1505 0.71 -1.1 1,656,641 + PfGW456L13_1505 0.71 +1.1 1,656,671 - PfGW456L13_1505 0.75 -0.8 1,656,694 + PfGW456L13_1505 0.79 -0.3 1,656,695 - PfGW456L13_1505 0.79 -1.7 1,656,695 - PfGW456L13_1505 0.79 -1.0 1,656,698 + PfGW456L13_1505 0.79 +0.9 1,656,698 + PfGW456L13_1505 0.79 +1.0 1,656,698 + PfGW456L13_1505 0.79 -0.4 1,656,698 + PfGW456L13_1505 0.79 -1.3 1,656,698 + PfGW456L13_1505 0.79 -0.1 1,656,698 + PfGW456L13_1505 0.79 -1.1 1,656,698 + PfGW456L13_1505 0.79 -0.3 1,656,698 + PfGW456L13_1505 0.79 -0.6 1,656,698 + PfGW456L13_1505 0.79 -0.3 1,656,698 + PfGW456L13_1505 0.79 -0.3 1,656,698 + PfGW456L13_1505 0.79 +0.5 1,656,698 + PfGW456L13_1505 0.79 +1.0 1,656,698 + PfGW456L13_1505 0.79 +0.1 1,656,698 + PfGW456L13_1505 0.79 -1.6 1,656,699 - PfGW456L13_1505 0.79 +1.0 1,656,699 - PfGW456L13_1505 0.79 -0.3 1,656,699 - PfGW456L13_1505 0.79 -0.5 1,656,699 - PfGW456L13_1505 0.79 -0.9 1,656,699 - PfGW456L13_1505 0.79 -0.6 1,656,699 - PfGW456L13_1505 0.79 +0.0 1,656,699 - PfGW456L13_1505 0.79 -0.6 1,656,699 - PfGW456L13_1505 0.79 -1.2 1,656,699 - PfGW456L13_1505 0.79 +0.7 1,656,699 - PfGW456L13_1505 0.79 -0.2 1,656,699 - PfGW456L13_1505 0.79 -1.0 1,656,699 - PfGW456L13_1505 0.79 +0.3 1,656,699 - PfGW456L13_1505 0.79 -0.1 1,656,699 - PfGW456L13_1505 0.79 +0.7 1,656,699 - PfGW456L13_1505 0.79 +0.6 1,656,799 + +0.3 1,656,799 + +1.6 1,656,799 + -0.7 1,657,691 - -2.1 1,657,719 - -0.6 1,657,719 - -0.5 1,657,730 - -0.7 1,657,730 - -1.8 1,657,775 + +0.5 1,657,775 + -1.3 1,657,776 - +1.0 1,657,997 + PfGW456L13_1508 0.35 +0.6
Or see this region's nucleotide sequence