Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_134

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_132 and PfGW456L13_133 are separated by 68 nucleotidesPfGW456L13_133 and PfGW456L13_134 are separated by 224 nucleotidesPfGW456L13_134 and PfGW456L13_135 overlap by 1 nucleotides PfGW456L13_132 - Lysine decarboxylase family, at 148,722 to 149,309 _132 PfGW456L13_133 - FIG00956548: hypothetical protein, at 149,378 to 149,557 _133 PfGW456L13_134 - Protein containing transglutaminase-like domain, putative cysteine protease, at 149,782 to 150,672 _134 PfGW456L13_135 - Protein containing domains DUF404, DUF407, DUF403, at 150,672 to 153,158 _135 Position (kb) 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 148.839 kb on + strand, within PfGW456L13_132at 148.839 kb on + strand, within PfGW456L13_132at 148.839 kb on + strand, within PfGW456L13_132at 148.839 kb on + strand, within PfGW456L13_132at 148.839 kb on + strand, within PfGW456L13_132at 148.840 kb on - strand, within PfGW456L13_132at 148.840 kb on - strand, within PfGW456L13_132at 148.840 kb on - strand, within PfGW456L13_132at 148.840 kb on - strand, within PfGW456L13_132at 149.142 kb on + strand, within PfGW456L13_132at 149.143 kb on - strand, within PfGW456L13_132at 149.276 kb on - strandat 149.336 kb on + strandat 149.336 kb on + strandat 149.336 kb on + strandat 149.337 kb on - strandat 149.389 kb on + strandat 149.389 kb on + strandat 149.390 kb on - strandat 149.390 kb on - strandat 149.390 kb on - strandat 149.390 kb on - strandat 149.390 kb on - strandat 149.390 kb on - strandat 149.393 kb on + strandat 149.393 kb on + strandat 149.393 kb on + strandat 149.394 kb on - strandat 149.394 kb on - strandat 149.394 kb on - strandat 149.394 kb on - strandat 149.467 kb on + strand, within PfGW456L13_133at 149.467 kb on + strand, within PfGW456L13_133at 149.467 kb on + strand, within PfGW456L13_133at 149.468 kb on - strand, within PfGW456L13_133at 149.468 kb on - strand, within PfGW456L13_133at 149.734 kb on + strandat 149.734 kb on + strandat 150.047 kb on + strand, within PfGW456L13_134at 150.047 kb on + strand, within PfGW456L13_134at 150.048 kb on - strand, within PfGW456L13_134at 150.048 kb on - strand, within PfGW456L13_134at 150.073 kb on + strand, within PfGW456L13_134at 150.074 kb on - strand, within PfGW456L13_134at 150.074 kb on - strand, within PfGW456L13_134at 150.074 kb on - strand, within PfGW456L13_134at 150.136 kb on + strand, within PfGW456L13_134at 150.136 kb on + strand, within PfGW456L13_134at 150.136 kb on + strandat 150.137 kb on - strand, within PfGW456L13_134at 150.177 kb on + strand, within PfGW456L13_134at 150.178 kb on - strand, within PfGW456L13_134at 150.178 kb on - strand, within PfGW456L13_134at 150.277 kb on + strand, within PfGW456L13_134at 150.277 kb on + strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.418 kb on + strand, within PfGW456L13_134at 150.419 kb on - strand, within PfGW456L13_134at 150.419 kb on - strand, within PfGW456L13_134at 150.629 kb on + strandat 150.630 kb on - strandat 150.635 kb on + strandat 150.987 kb on + strand, within PfGW456L13_135at 150.988 kb on - strand, within PfGW456L13_135at 150.988 kb on - strand, within PfGW456L13_135at 151.039 kb on + strand, within PfGW456L13_135at 151.039 kb on + strand, within PfGW456L13_135at 151.039 kb on + strand, within PfGW456L13_135at 151.039 kb on + strand, within PfGW456L13_135at 151.039 kb on + strand, within PfGW456L13_135at 151.039 kb on + strand, within PfGW456L13_135at 151.040 kb on - strand, within PfGW456L13_135at 151.040 kb on - strand, within PfGW456L13_135at 151.537 kb on + strand, within PfGW456L13_135at 151.591 kb on + strand, within PfGW456L13_135at 151.636 kb on + strand, within PfGW456L13_135

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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148,839 + PfGW456L13_132 0.20 -0.2
148,839 + PfGW456L13_132 0.20 +1.7
148,839 + PfGW456L13_132 0.20 +0.5
148,839 + PfGW456L13_132 0.20 +0.1
148,839 + PfGW456L13_132 0.20 +0.5
148,840 - PfGW456L13_132 0.20 -0.5
148,840 - PfGW456L13_132 0.20 -1.2
148,840 - PfGW456L13_132 0.20 -0.0
148,840 - PfGW456L13_132 0.20 +1.0
149,142 + PfGW456L13_132 0.71 -1.3
149,143 - PfGW456L13_132 0.72 -0.4
149,276 - +1.9
149,336 + +0.7
149,336 + -0.0
149,336 + +0.4
149,337 - -2.1
149,389 + +0.4
149,389 + +0.8
149,390 - -0.4
149,390 - -1.0
149,390 - -0.6
149,390 - +2.0
149,390 - +0.3
149,390 - +0.3
149,393 + -0.2
149,393 + -0.2
149,393 + -0.4
149,394 - +0.3
149,394 - +0.1
149,394 - -0.7
149,394 - +0.3
149,467 + PfGW456L13_133 0.49 +0.2
149,467 + PfGW456L13_133 0.49 +0.6
149,467 + PfGW456L13_133 0.49 +0.1
149,468 - PfGW456L13_133 0.50 -0.7
149,468 - PfGW456L13_133 0.50 -0.9
149,734 + -0.7
149,734 + +0.7
150,047 + PfGW456L13_134 0.30 -1.0
150,047 + PfGW456L13_134 0.30 -0.5
150,048 - PfGW456L13_134 0.30 -0.1
150,048 - PfGW456L13_134 0.30 +0.7
150,073 + PfGW456L13_134 0.33 +1.2
150,074 - PfGW456L13_134 0.33 -1.5
150,074 - PfGW456L13_134 0.33 +0.2
150,074 - PfGW456L13_134 0.33 +0.3
150,136 + PfGW456L13_134 0.40 -1.0
150,136 + PfGW456L13_134 0.40 +0.3
150,136 + +0.2
150,137 - PfGW456L13_134 0.40 -0.3
150,177 + PfGW456L13_134 0.44 +0.6
150,178 - PfGW456L13_134 0.44 +0.7
150,178 - PfGW456L13_134 0.44 +1.6
150,277 + PfGW456L13_134 0.56 -1.3
150,277 + PfGW456L13_134 0.56 +1.3
150,278 - PfGW456L13_134 0.56 -0.6
150,278 - PfGW456L13_134 0.56 -1.0
150,278 - PfGW456L13_134 0.56 +0.8
150,278 - PfGW456L13_134 0.56 +0.2
150,278 - PfGW456L13_134 0.56 -1.4
150,278 - PfGW456L13_134 0.56 -0.6
150,278 - PfGW456L13_134 0.56 +1.9
150,287 + PfGW456L13_134 0.57 +0.9
150,287 + PfGW456L13_134 0.57 -0.0
150,287 + PfGW456L13_134 0.57 +1.2
150,287 + PfGW456L13_134 0.57 +0.3
150,287 + PfGW456L13_134 0.57 +0.1
150,287 + PfGW456L13_134 0.57 -0.4
150,287 + PfGW456L13_134 0.57 +1.5
150,287 + PfGW456L13_134 0.57 -0.9
150,287 + PfGW456L13_134 0.57 +0.6
150,287 + PfGW456L13_134 0.57 -0.7
150,288 - PfGW456L13_134 0.57 -0.1
150,288 - PfGW456L13_134 0.57 -1.5
150,288 - PfGW456L13_134 0.57 +1.3
150,288 - PfGW456L13_134 0.57 +1.7
150,288 - PfGW456L13_134 0.57 -1.0
150,288 - PfGW456L13_134 0.57 -0.1
150,288 - PfGW456L13_134 0.57 +2.0
150,288 - PfGW456L13_134 0.57 -0.6
150,288 - PfGW456L13_134 0.57 +0.0
150,288 - PfGW456L13_134 0.57 +0.3
150,350 + PfGW456L13_134 0.64 +0.3
150,350 + PfGW456L13_134 0.64 -0.6
150,350 + PfGW456L13_134 0.64 +0.3
150,350 + PfGW456L13_134 0.64 +0.7
150,350 + PfGW456L13_134 0.64 -0.9
150,350 + PfGW456L13_134 0.64 -0.3
150,351 - PfGW456L13_134 0.64 +0.8
150,351 - PfGW456L13_134 0.64 -0.2
150,351 - PfGW456L13_134 0.64 +1.0
150,351 - PfGW456L13_134 0.64 +0.5
150,351 - PfGW456L13_134 0.64 -0.6
150,351 - PfGW456L13_134 0.64 +1.4
150,351 - PfGW456L13_134 0.64 -0.4
150,418 + PfGW456L13_134 0.71 +0.3
150,419 - PfGW456L13_134 0.71 -0.3
150,419 - PfGW456L13_134 0.71 +0.3
150,629 + -0.0
150,630 - -1.5
150,635 + +0.6
150,987 + PfGW456L13_135 0.13 +1.0
150,988 - PfGW456L13_135 0.13 +0.9
150,988 - PfGW456L13_135 0.13 +0.5
151,039 + PfGW456L13_135 0.15 -0.2
151,039 + PfGW456L13_135 0.15 -2.8
151,039 + PfGW456L13_135 0.15 -0.1
151,039 + PfGW456L13_135 0.15 +0.9
151,039 + PfGW456L13_135 0.15 -1.1
151,039 + PfGW456L13_135 0.15 -0.3
151,040 - PfGW456L13_135 0.15 +1.6
151,040 - PfGW456L13_135 0.15 +0.0
151,537 + PfGW456L13_135 0.35 -0.7
151,591 + PfGW456L13_135 0.37 +1.2
151,636 + PfGW456L13_135 0.39 +1.1

Or see this region's nucleotide sequence