Strain Fitness in Pseudomonas sp. RS175 around PFR28_01350

Experiment: D-(+)-Galactosamine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-(+)-Galactosamine (C) 10 mM
1,466,735	-		PFR28_01349	0.33	+1.0
1,466,735	-		PFR28_01349	0.33	-1.8
1,466,856	+		PFR28_01349	0.42	+0.9
1,466,857	-		PFR28_01349	0.42	-0.8
1,467,052	+		PFR28_01349	0.57	-2.0
1,467,211	+		PFR28_01349	0.70	+1.3
1,467,212	-		PFR28_01349	0.70	+0.4
1,467,250	+		PFR28_01349	0.73	+1.2
1,467,250	+		PFR28_01349	0.73	+0.7
1,467,250	+		PFR28_01349	0.73	+0.4
1,467,250	+		PFR28_01349	0.73	+1.3
1,467,250	+		PFR28_01349	0.73	-0.1
1,467,251	-		PFR28_01349	0.73	-1.2
1,467,251	-		PFR28_01349	0.73	-1.8
1,467,251	-		PFR28_01349	0.73	+0.7
1,467,251	-		PFR28_01349	0.73	-1.4
1,467,251	-		PFR28_01349	0.73	-1.2
1,467,251	-		PFR28_01349	0.73	-1.0
1,467,252	+		PFR28_01349	0.73	-0.1
1,467,364	+		PFR28_01349	0.82	+0.2
1,467,364	+		PFR28_01349	0.82	+0.1
1,467,424	+		PFR28_01349	0.86	-0.5
1,467,424	+		PFR28_01349	0.86	+0.2
1,467,589	+				-0.2
1,467,589	+				+1.1
1,467,590	-				+0.0
1,467,590	-				+1.0
1,467,590	-				+0.2
1,467,590	-				-0.6
1,467,590	-				-2.3
1,467,590	-				-0.7
1,467,590	-				-0.1
1,467,590	-				+0.4
1,467,814	+		PFR28_01350	0.11	-0.0
1,467,814	+		PFR28_01350	0.11	+1.1
1,467,814	+		PFR28_01350	0.11	+1.9
1,467,856	-		PFR28_01350	0.15	-1.3
1,467,914	-		PFR28_01350	0.21	+0.7
1,467,943	+		PFR28_01350	0.24	+0.1
1,467,943	+		PFR28_01350	0.24	+0.5
1,467,943	+		PFR28_01350	0.24	+0.3
1,467,944	-		PFR28_01350	0.24	+0.5
1,467,944	-		PFR28_01350	0.24	+0.3
1,467,944	-		PFR28_01350	0.24	-0.1
1,467,985	+		PFR28_01350	0.29	+0.5
1,468,060	+		PFR28_01350	0.37	+0.3
1,468,060	+		PFR28_01350	0.37	+0.4
1,468,060	+		PFR28_01350	0.37	+0.9
1,468,060	+		PFR28_01350	0.37	+1.5
1,468,060	+		PFR28_01350	0.37	-0.6
1,468,060	+		PFR28_01350	0.37	-0.4
1,468,061	-		PFR28_01350	0.37	+0.8
1,468,061	-		PFR28_01350	0.37	-0.3
1,468,061	-		PFR28_01350	0.37	+0.2
1,468,126	+		PFR28_01350	0.44	+0.4
1,468,126	+		PFR28_01350	0.44	-0.9
1,468,126	+		PFR28_01350	0.44	-1.6
1,468,126	+		PFR28_01350	0.44	-1.5
1,468,126	+		PFR28_01350	0.44	-0.8
1,468,126	+		PFR28_01350	0.44	-1.5
1,468,127	-		PFR28_01350	0.44	+0.4
1,468,127	-		PFR28_01350	0.44	+1.9
1,468,127	-		PFR28_01350	0.44	-0.3
1,468,127	-		PFR28_01350	0.44	-0.7
1,468,127	-		PFR28_01350	0.44	-2.3
1,468,127	-		PFR28_01350	0.44	+0.2
1,468,127	-		PFR28_01350	0.44	-3.2
1,468,127	-		PFR28_01350	0.44	-0.9
1,468,127	-		PFR28_01350	0.44	-1.4
1,468,132	+		PFR28_01350	0.44	-0.1
1,468,171	+		PFR28_01350	0.48	-0.7
1,468,172	-		PFR28_01350	0.48	+0.1
1,468,172	-		PFR28_01350	0.48	+0.7
1,468,333	+		PFR28_01350	0.66	+0.9
1,468,333	+		PFR28_01350	0.66	-0.8
1,468,333	+		PFR28_01350	0.66	-0.1
1,468,333	+		PFR28_01350	0.66	+0.1
1,468,333	+		PFR28_01350	0.66	-0.2
1,468,334	-		PFR28_01350	0.66	+0.5
1,468,334	-		PFR28_01350	0.66	+0.5
1,468,334	-		PFR28_01350	0.66	+0.6
1,468,334	-		PFR28_01350	0.66	-0.1
1,468,334	-		PFR28_01350	0.66	+0.9
1,468,334	-		PFR28_01350	0.66	+0.1
1,468,334	-		PFR28_01350	0.66	+0.1
1,468,375	+		PFR28_01350	0.70	-1.3
1,468,375	+		PFR28_01350	0.70	+0.2
1,468,375	+		PFR28_01350	0.70	+0.3
1,468,375	+		PFR28_01350	0.70	-1.0
1,468,465	+		PFR28_01350	0.79	-1.1
1,468,465	+		PFR28_01350	0.79	-1.3
1,468,465	+		PFR28_01350	0.79	-0.4
1,468,466	-		PFR28_01350	0.80	-2.8
1,468,474	+		PFR28_01350	0.80	-1.3
1,468,474	+		PFR28_01350	0.80	+0.5
1,468,474	+		PFR28_01350	0.80	-0.2
1,468,474	+		PFR28_01350	0.80	+1.9
1,468,474	+		PFR28_01350	0.80	-0.8
1,468,474	+		PFR28_01350	0.80	+0.4
1,468,474	+		PFR28_01350	0.80	-1.3
1,468,474	+		PFR28_01350	0.80	-0.3
1,468,475	-		PFR28_01350	0.81	-0.2
1,468,475	-		PFR28_01350	0.81	+0.7
1,468,475	-		PFR28_01350	0.81	-0.3
1,468,475	-		PFR28_01350	0.81	-0.7
1,468,475	-		PFR28_01350	0.81	-1.2
1,468,475	-		PFR28_01350	0.81	-3.5
1,468,475	-		PFR28_01350	0.81	-1.2
1,468,475	-		PFR28_01350	0.81	+0.5
1,468,477	+		PFR28_01350	0.81	+0.4
1,468,477	+		PFR28_01350	0.81	-0.2
1,468,477	+		PFR28_01350	0.81	+0.0
1,468,478	-		PFR28_01350	0.81	-2.3
1,468,674	+				+0.7
1,468,674	+				+0.3
1,468,674	+				+0.4
1,468,674	+				+0.3
1,468,675	-				-0.9
1,468,675	-				-1.7
1,468,675	-				-0.9
1,468,675	-				+0.3
1,468,706	-				-1.2
1,468,712	-				-0.6
1,468,712	-				-2.6
1,468,805	-				+0.4
1,468,841	+				+1.4
1,468,842	-				+0.3
1,468,842	-				-0.0
1,468,842	-				-0.6
1,468,883	+				+0.0
1,468,883	+				-0.3
1,468,883	+				+0.9
1,468,883	+				-0.2
1,468,883	+				-1.0
1,468,884	-				-0.4
1,468,884	-				-0.3
1,468,884	-				-1.8
1,468,887	+				-1.7
1,468,887	+				+1.1
1,468,887	+				-0.9
1,468,887	+				+1.1
1,468,888	-				-0.1
1,468,888	-				+1.6
1,468,888	-				-4.1
1,468,888	-				-0.2
1,468,888	-				-0.3
1,469,021	+		PFR28_01351	0.15	+0.6
1,469,021	+		PFR28_01351	0.15	-0.8
1,469,021	+		PFR28_01351	0.15	-1.6
1,469,021	+		PFR28_01351	0.15	-0.0
1,469,022	-		PFR28_01351	0.15	-0.3
1,469,022	-		PFR28_01351	0.15	+0.4
1,469,022	-		PFR28_01351	0.15	-2.0
1,469,022	-		PFR28_01351	0.15	-0.9
1,469,068	+		PFR28_01351	0.20	-0.2
1,469,068	+		PFR28_01351	0.20	-3.6
1,469,068	+		PFR28_01351	0.20	-0.8
1,469,068	+		PFR28_01351	0.20	+0.2
1,469,069	-		PFR28_01351	0.20	+1.1
1,469,069	-		PFR28_01351	0.20	-1.5
1,469,069	-		PFR28_01351	0.20	-2.4
1,469,334	+		PFR28_01351	0.45	+0.5
1,469,334	+		PFR28_01351	0.45	+0.2
1,469,403	+		PFR28_01351	0.52	+0.0
1,469,404	-		PFR28_01351	0.52	-1.8
1,469,404	-		PFR28_01351	0.52	-2.0
1,469,404	-		PFR28_01351	0.52	+0.6
1,469,458	-		PFR28_01351	0.57	+0.1
1,469,458	-		PFR28_01351	0.57	+1.4