Experiment: D-(+)-Galactosamine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00912 and PFR28_00913 are separated by 144 nucleotides PFR28_00913 and PFR28_00914 are separated by 25 nucleotides PFR28_00914 and PFR28_00915 are separated by 185 nucleotides
PFR28_00912: PFR28_00912 - hypothetical protein, at 993,659 to 993,937
_00912
PFR28_00913: PFR28_00913 - Integration host factor subunit beta, at 994,082 to 994,378
_00913
PFR28_00914: PFR28_00914 - hypothetical protein, at 994,404 to 994,628
_00914
PFR28_00915: PFR28_00915 - Chain length determinant protein, at 994,814 to 995,884
_00915
Position (kb) 994
995
996 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 993.831 kb on - strand, within PFR28_00912 at 993.831 kb on - strand, within PFR28_00912 at 993.837 kb on + strand, within PFR28_00912 at 993.837 kb on + strand, within PFR28_00912 at 993.838 kb on - strand, within PFR28_00912 at 993.838 kb on - strand, within PFR28_00912 at 993.838 kb on - strand, within PFR28_00912 at 993.838 kb on - strand, within PFR28_00912 at 993.838 kb on - strand, within PFR28_00912 at 993.838 kb on - strand, within PFR28_00912 at 993.838 kb on - strand, within PFR28_00912 at 993.840 kb on + strand, within PFR28_00912 at 993.841 kb on - strand, within PFR28_00912 at 993.903 kb on - strand, within PFR28_00912 at 993.913 kb on + strand at 993.913 kb on + strand at 993.936 kb on - strand at 993.936 kb on - strand at 994.033 kb on - strand at 994.165 kb on + strand, within PFR28_00913 at 994.165 kb on + strand, within PFR28_00913 at 994.165 kb on + strand, within PFR28_00913 at 994.165 kb on + strand, within PFR28_00913 at 994.165 kb on + strand, within PFR28_00913 at 994.165 kb on + strand, within PFR28_00913 at 994.165 kb on + strand, within PFR28_00913 at 994.165 kb on + strand, within PFR28_00913 at 994.165 kb on + strand, within PFR28_00913 at 994.166 kb on - strand, within PFR28_00913 at 994.166 kb on - strand, within PFR28_00913 at 994.166 kb on - strand, within PFR28_00913 at 994.166 kb on - strand, within PFR28_00913 at 994.166 kb on - strand, within PFR28_00913 at 994.166 kb on - strand, within PFR28_00913 at 994.260 kb on + strand, within PFR28_00913 at 994.311 kb on + strand, within PFR28_00913 at 994.311 kb on + strand, within PFR28_00913 at 994.312 kb on - strand, within PFR28_00913 at 994.312 kb on - strand, within PFR28_00913 at 994.312 kb on - strand, within PFR28_00913 at 994.331 kb on - strand, within PFR28_00913 at 994.350 kb on + strand at 994.351 kb on - strand at 994.351 kb on - strand at 994.404 kb on - strand at 994.460 kb on + strand, within PFR28_00914 at 994.461 kb on - strand, within PFR28_00914 at 994.567 kb on + strand, within PFR28_00914 at 994.567 kb on + strand, within PFR28_00914 at 994.567 kb on + strand, within PFR28_00914 at 994.568 kb on - strand, within PFR28_00914 at 994.568 kb on - strand, within PFR28_00914 at 994.568 kb on - strand, within PFR28_00914 at 994.627 kb on - strand at 994.627 kb on - strand at 994.658 kb on - strand at 994.658 kb on - strand at 994.687 kb on + strand at 994.688 kb on - strand at 994.764 kb on + strand at 994.765 kb on - strand at 994.905 kb on + strand at 994.910 kb on - strand at 994.910 kb on - strand at 994.924 kb on + strand, within PFR28_00915 at 994.924 kb on + strand, within PFR28_00915 at 994.985 kb on - strand, within PFR28_00915 at 995.025 kb on - strand, within PFR28_00915 at 995.057 kb on + strand, within PFR28_00915 at 995.083 kb on - strand, within PFR28_00915 at 995.187 kb on + strand, within PFR28_00915 at 995.187 kb on + strand, within PFR28_00915 at 995.187 kb on + strand, within PFR28_00915 at 995.187 kb on + strand, within PFR28_00915 at 995.188 kb on - strand, within PFR28_00915 at 995.189 kb on + strand, within PFR28_00915 at 995.190 kb on - strand, within PFR28_00915 at 995.190 kb on - strand, within PFR28_00915 at 995.190 kb on - strand, within PFR28_00915 at 995.298 kb on + strand, within PFR28_00915 at 995.306 kb on + strand, within PFR28_00915 at 995.307 kb on - strand, within PFR28_00915 at 995.307 kb on - strand, within PFR28_00915 at 995.307 kb on - strand, within PFR28_00915 at 995.307 kb on - strand, within PFR28_00915 at 995.307 kb on - strand, within PFR28_00915 at 995.307 kb on - strand, within PFR28_00915 at 995.373 kb on + strand, within PFR28_00915 at 995.373 kb on + strand, within PFR28_00915 at 995.373 kb on + strand, within PFR28_00915 at 995.374 kb on - strand, within PFR28_00915 at 995.503 kb on + strand, within PFR28_00915 at 995.503 kb on + strand, within PFR28_00915 at 995.503 kb on + strand, within PFR28_00915 at 995.503 kb on + strand, within PFR28_00915 at 995.504 kb on - strand, within PFR28_00915 at 995.548 kb on + strand, within PFR28_00915 at 995.558 kb on + strand, within PFR28_00915 at 995.602 kb on - strand, within PFR28_00915 at 995.662 kb on + strand, within PFR28_00915 at 995.662 kb on + strand, within PFR28_00915 at 995.663 kb on - strand, within PFR28_00915 at 995.772 kb on + strand, within PFR28_00915 at 995.772 kb on + strand, within PFR28_00915 at 995.773 kb on - strand, within PFR28_00915 at 995.860 kb on + strand at 995.861 kb on - strand at 995.944 kb on + strand at 995.944 kb on + strand at 995.944 kb on + strand at 995.944 kb on + strand at 995.945 kb on - strand at 995.945 kb on - strand at 995.948 kb on + strand at 995.948 kb on + strand at 995.948 kb on + strand at 995.948 kb on + strand at 995.948 kb on + strand at 995.948 kb on + strand at 995.948 kb on + strand at 995.948 kb on + strand at 995.949 kb on - strand at 995.949 kb on - strand at 996.034 kb on - strand at 996.048 kb on - strand at 996.098 kb on + strand at 996.152 kb on + strand at 996.152 kb on + strand at 996.152 kb on + strand at 996.152 kb on + strand at 996.152 kb on + strand at 996.153 kb on - strand at 996.173 kb on + strand at 996.173 kb on + strand at 996.174 kb on - strand at 996.174 kb on - strand at 996.174 kb on - strand at 996.174 kb on - strand at 996.180 kb on + strand at 996.180 kb on + strand at 996.180 kb on + strand at 996.180 kb on + strand at 996.180 kb on + strand at 996.180 kb on + strand at 996.180 kb on + strand at 996.181 kb on - strand at 996.181 kb on - strand at 996.181 kb on - strand at 996.181 kb on - strand at 996.201 kb on + strand at 996.201 kb on + strand at 996.201 kb on + strand at 996.201 kb on + strand at 996.201 kb on + strand at 996.202 kb on - strand at 996.209 kb on - strand at 996.298 kb on + strand at 996.298 kb on + strand at 996.298 kb on + strand at 996.298 kb on + strand at 996.299 kb on - strand at 996.299 kb on - strand at 996.299 kb on - strand at 996.306 kb on - strand at 996.306 kb on - strand at 996.321 kb on + strand at 996.321 kb on + strand at 996.321 kb on + strand at 996.322 kb on - strand at 996.322 kb on - strand at 996.374 kb on + strand at 996.374 kb on + strand at 996.375 kb on - strand at 996.375 kb on - strand at 996.375 kb on - strand at 996.387 kb on + strand at 996.387 kb on + strand at 996.388 kb on - strand at 996.397 kb on - strand at 996.421 kb on + strand at 996.460 kb on + strand at 996.460 kb on + strand at 996.460 kb on + strand at 996.461 kb on - strand at 996.461 kb on - strand at 996.461 kb on - strand at 996.461 kb on - strand at 996.466 kb on - strand at 996.466 kb on - strand at 996.466 kb on - strand at 996.466 kb on - strand at 996.466 kb on - strand at 996.466 kb on - strand at 996.473 kb on + strand at 996.473 kb on + strand at 996.474 kb on - strand at 996.474 kb on - strand at 996.491 kb on + strand at 996.520 kb on + strand at 996.520 kb on + strand at 996.521 kb on - strand at 996.521 kb on - strand at 996.668 kb on - strand at 996.671 kb on + strand at 996.671 kb on + strand at 996.671 kb on + strand at 996.671 kb on + strand at 996.671 kb on + strand at 996.671 kb on + strand at 996.671 kb on + strand at 996.671 kb on + strand at 996.671 kb on + strand at 996.672 kb on - strand at 996.672 kb on - strand at 996.672 kb on - strand at 996.672 kb on - strand at 996.672 kb on - strand at 996.672 kb on - strand at 996.672 kb on - strand at 996.672 kb on - strand at 996.672 kb on - strand at 996.672 kb on - strand at 996.672 kb on - strand at 996.735 kb on + strand at 996.735 kb on + strand at 996.735 kb on + strand at 996.735 kb on + strand at 996.736 kb on - strand at 996.736 kb on - strand at 996.736 kb on - strand at 996.736 kb on - strand at 996.736 kb on - strand at 996.762 kb on - strand at 996.771 kb on + strand at 996.772 kb on - strand at 996.801 kb on + strand at 996.802 kb on - strand at 996.802 kb on - strand at 996.813 kb on + strand at 996.813 kb on + strand at 996.813 kb on + strand at 996.814 kb on - strand at 996.814 kb on - strand at 996.814 kb on - strand at 996.831 kb on + strand at 996.841 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-(+)-Galactosamine (C) 10 mM remove 993,831 - PFR28_00912 0.62 +1.0 993,831 - PFR28_00912 0.62 -1.0 993,837 + PFR28_00912 0.64 -0.3 993,837 + PFR28_00912 0.64 -0.9 993,838 - PFR28_00912 0.64 -0.1 993,838 - PFR28_00912 0.64 +0.0 993,838 - PFR28_00912 0.64 -1.1 993,838 - PFR28_00912 0.64 -0.6 993,838 - PFR28_00912 0.64 -2.2 993,838 - PFR28_00912 0.64 +0.1 993,838 - PFR28_00912 0.64 +1.4 993,840 + PFR28_00912 0.65 +0.7 993,841 - PFR28_00912 0.65 +0.2 993,903 - PFR28_00912 0.87 +0.2 993,913 + -0.0 993,913 + -0.3 993,936 - -1.1 993,936 - +0.4 994,033 - -0.4 994,165 + PFR28_00913 0.28 +1.0 994,165 + PFR28_00913 0.28 -2.8 994,165 + PFR28_00913 0.28 -0.1 994,165 + PFR28_00913 0.28 -0.6 994,165 + PFR28_00913 0.28 -0.4 994,165 + PFR28_00913 0.28 -2.7 994,165 + PFR28_00913 0.28 +0.3 994,165 + PFR28_00913 0.28 -1.4 994,165 + PFR28_00913 0.28 -2.1 994,166 - PFR28_00913 0.28 -0.4 994,166 - PFR28_00913 0.28 -4.1 994,166 - PFR28_00913 0.28 -1.1 994,166 - PFR28_00913 0.28 -1.5 994,166 - PFR28_00913 0.28 -1.0 994,166 - PFR28_00913 0.28 +0.2 994,260 + PFR28_00913 0.60 -0.5 994,311 + PFR28_00913 0.77 -0.3 994,311 + PFR28_00913 0.77 -2.0 994,312 - PFR28_00913 0.77 +0.0 994,312 - PFR28_00913 0.77 -1.1 994,312 - PFR28_00913 0.77 -0.5 994,331 - PFR28_00913 0.84 -3.0 994,350 + +0.1 994,351 - -2.5 994,351 - -1.4 994,404 - -2.1 994,460 + PFR28_00914 0.25 -0.3 994,461 - PFR28_00914 0.25 -1.6 994,567 + PFR28_00914 0.72 -0.2 994,567 + PFR28_00914 0.72 -0.1 994,567 + PFR28_00914 0.72 +0.4 994,568 - PFR28_00914 0.73 -2.8 994,568 - PFR28_00914 0.73 -2.0 994,568 - PFR28_00914 0.73 -0.6 994,627 - -1.5 994,627 - -2.3 994,658 - -0.1 994,658 - -0.7 994,687 + -0.1 994,688 - -0.6 994,764 + +0.6 994,765 - -1.2 994,905 + +1.2 994,910 - +0.1 994,910 - -0.4 994,924 + PFR28_00915 0.10 +1.1 994,924 + PFR28_00915 0.10 -1.4 994,985 - PFR28_00915 0.16 -1.8 995,025 - PFR28_00915 0.20 -1.5 995,057 + PFR28_00915 0.23 -1.8 995,083 - PFR28_00915 0.25 -0.4 995,187 + PFR28_00915 0.35 -3.4 995,187 + PFR28_00915 0.35 +0.1 995,187 + PFR28_00915 0.35 -0.2 995,187 + PFR28_00915 0.35 +0.5 995,188 - PFR28_00915 0.35 -2.2 995,189 + PFR28_00915 0.35 -0.5 995,190 - PFR28_00915 0.35 -0.9 995,190 - PFR28_00915 0.35 +1.7 995,190 - PFR28_00915 0.35 -0.2 995,298 + PFR28_00915 0.45 -0.6 995,306 + PFR28_00915 0.46 +0.2 995,307 - PFR28_00915 0.46 -2.4 995,307 - PFR28_00915 0.46 -1.6 995,307 - PFR28_00915 0.46 -1.2 995,307 - PFR28_00915 0.46 -0.9 995,307 - PFR28_00915 0.46 -1.2 995,307 - PFR28_00915 0.46 -2.0 995,373 + PFR28_00915 0.52 -1.5 995,373 + PFR28_00915 0.52 -0.1 995,373 + PFR28_00915 0.52 -0.6 995,374 - PFR28_00915 0.52 +0.9 995,503 + PFR28_00915 0.64 +0.0 995,503 + PFR28_00915 0.64 -1.8 995,503 + PFR28_00915 0.64 +0.3 995,503 + PFR28_00915 0.64 -0.6 995,504 - PFR28_00915 0.64 -0.1 995,548 + PFR28_00915 0.69 -0.5 995,558 + PFR28_00915 0.69 -0.4 995,602 - PFR28_00915 0.74 -3.5 995,662 + PFR28_00915 0.79 -1.2 995,662 + PFR28_00915 0.79 -0.6 995,663 - PFR28_00915 0.79 +0.1 995,772 + PFR28_00915 0.89 -0.4 995,772 + PFR28_00915 0.89 -0.2 995,773 - PFR28_00915 0.90 +0.2 995,860 + +0.4 995,861 - -0.9 995,944 + +0.7 995,944 + +0.7 995,944 + +0.4 995,944 + +0.9 995,945 - -0.9 995,945 - +0.3 995,948 + +0.8 995,948 + +0.7 995,948 + -1.5 995,948 + +0.9 995,948 + -1.1 995,948 + +0.5 995,948 + -0.5 995,948 + +0.1 995,949 - -1.5 995,949 - +0.1 996,034 - -1.8 996,048 - -0.9 996,098 + -1.8 996,152 + -0.4 996,152 + +1.2 996,152 + -0.2 996,152 + -0.1 996,152 + +0.9 996,153 - -0.6 996,173 + +1.4 996,173 + +0.6 996,174 - +0.0 996,174 - -0.4 996,174 - -0.3 996,174 - -1.1 996,180 + +0.1 996,180 + -0.8 996,180 + -0.5 996,180 + +1.0 996,180 + +1.7 996,180 + +0.4 996,180 + -0.8 996,181 - -0.6 996,181 - +0.4 996,181 - +0.1 996,181 - -1.4 996,201 + -0.1 996,201 + +1.1 996,201 + -0.2 996,201 + +1.6 996,201 + +1.7 996,202 - +1.6 996,209 - -0.5 996,298 + -0.0 996,298 + -1.1 996,298 + +0.4 996,298 + +1.9 996,299 - -1.5 996,299 - -2.2 996,299 - -0.6 996,306 - -1.4 996,306 - -0.3 996,321 + +0.6 996,321 + +1.6 996,321 + -0.2 996,322 - +0.1 996,322 - -1.0 996,374 + -1.1 996,374 + -0.1 996,375 - -2.4 996,375 - +0.0 996,375 - -1.1 996,387 + +1.1 996,387 + +1.6 996,388 - -2.5 996,397 - -3.8 996,421 + +1.0 996,460 + -0.5 996,460 + -2.4 996,460 + +0.7 996,461 - +0.8 996,461 - -0.3 996,461 - -1.0 996,461 - -1.0 996,466 - -0.3 996,466 - -2.5 996,466 - -0.7 996,466 - +0.1 996,466 - -1.7 996,466 - -1.4 996,473 + -0.2 996,473 + -0.0 996,474 - -0.6 996,474 - -1.4 996,491 + -0.1 996,520 + +0.5 996,520 + +1.3 996,521 - -0.4 996,521 - -2.4 996,668 - -1.9 996,671 + -1.5 996,671 + +0.4 996,671 + +1.2 996,671 + +0.8 996,671 + +0.1 996,671 + -1.2 996,671 + +0.4 996,671 + +0.3 996,671 + +1.2 996,672 - -0.6 996,672 - -2.6 996,672 - -2.1 996,672 - -1.6 996,672 - -1.5 996,672 - -1.6 996,672 - -1.3 996,672 - -1.7 996,672 - -0.3 996,672 - -1.6 996,672 - -0.9 996,735 + +0.4 996,735 + -0.5 996,735 + -0.3 996,735 + +0.1 996,736 - -1.0 996,736 - -2.3 996,736 - -0.4 996,736 - -2.1 996,736 - -1.2 996,762 - -3.2 996,771 + +0.8 996,772 - -0.2 996,801 + +0.2 996,802 - -2.1 996,802 - -1.9 996,813 + +0.4 996,813 + -1.5 996,813 + +0.3 996,814 - -0.5 996,814 - -0.7 996,814 - -1.3 996,831 + -0.4 996,841 - -1.4
Or see this region's nucleotide sequence