Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4550 and Echvi_4551 are separated by 30 nucleotides Echvi_4551 and Echvi_4552 are separated by 339 nucleotides Echvi_4552 and Echvi_4553 are separated by 107 nucleotides Echvi_4553 and Echvi_4554 are separated by 18 nucleotides
Echvi_4550: Echvi_4550 - hypothetical protein, at 5,445,758 to 5,446,381
_4550
Echvi_4551: Echvi_4551 - hypothetical protein, at 5,446,412 to 5,446,741
_4551
Echvi_4552: Echvi_4552 - Bacterial Ig-like domain (group 4)./Putative glycosyl hydrolase of unknown function (DUF1680)., at 5,447,081 to 5,450,209
_4552
Echvi_4553: Echvi_4553 - hypothetical protein, at 5,450,317 to 5,450,781
_4553
Echvi_4554: Echvi_4554 - Outer membrane receptor proteins, mostly Fe transport, at 5,450,800 to 5,453,031
_4554
Position (kb) 5447
5448
5449
5450
5451 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5446.182 kb on + strand, within Echvi_4550 at 5446.182 kb on + strand, within Echvi_4550 at 5446.182 kb on + strand, within Echvi_4550 at 5446.184 kb on + strand, within Echvi_4550 at 5446.199 kb on + strand, within Echvi_4550 at 5446.199 kb on + strand, within Echvi_4550 at 5446.211 kb on - strand, within Echvi_4550 at 5446.310 kb on + strand, within Echvi_4550 at 5446.311 kb on - strand, within Echvi_4550 at 5446.356 kb on + strand at 5446.369 kb on + strand at 5446.413 kb on + strand at 5446.415 kb on + strand at 5446.416 kb on - strand at 5446.471 kb on + strand, within Echvi_4551 at 5446.578 kb on + strand, within Echvi_4551 at 5446.578 kb on + strand, within Echvi_4551 at 5446.578 kb on + strand, within Echvi_4551 at 5446.582 kb on + strand, within Echvi_4551 at 5446.582 kb on + strand, within Echvi_4551 at 5446.582 kb on + strand, within Echvi_4551 at 5446.628 kb on + strand, within Echvi_4551 at 5446.741 kb on + strand at 5446.759 kb on + strand at 5446.789 kb on + strand at 5446.791 kb on + strand at 5446.791 kb on + strand at 5446.791 kb on + strand at 5446.803 kb on + strand at 5446.813 kb on + strand at 5446.835 kb on + strand at 5446.977 kb on + strand at 5446.978 kb on - strand at 5446.989 kb on + strand at 5447.011 kb on + strand at 5447.011 kb on + strand at 5447.022 kb on + strand at 5447.022 kb on + strand at 5447.022 kb on + strand at 5447.024 kb on + strand at 5447.024 kb on + strand at 5447.067 kb on + strand at 5447.070 kb on + strand at 5447.149 kb on + strand at 5447.149 kb on + strand at 5447.149 kb on + strand at 5447.178 kb on + strand at 5447.178 kb on + strand at 5447.179 kb on - strand at 5447.250 kb on + strand at 5447.379 kb on + strand at 5447.379 kb on + strand at 5447.379 kb on + strand at 5447.380 kb on - strand at 5447.693 kb on + strand, within Echvi_4552 at 5447.751 kb on + strand, within Echvi_4552 at 5447.820 kb on + strand, within Echvi_4552 at 5447.962 kb on - strand, within Echvi_4552 at 5447.988 kb on - strand, within Echvi_4552 at 5447.996 kb on + strand, within Echvi_4552 at 5448.009 kb on + strand, within Echvi_4552 at 5448.010 kb on - strand, within Echvi_4552 at 5448.158 kb on - strand, within Echvi_4552 at 5448.161 kb on + strand, within Echvi_4552 at 5448.162 kb on - strand, within Echvi_4552 at 5448.162 kb on - strand, within Echvi_4552 at 5448.162 kb on - strand, within Echvi_4552 at 5448.231 kb on + strand, within Echvi_4552 at 5448.231 kb on + strand, within Echvi_4552 at 5448.232 kb on - strand, within Echvi_4552 at 5448.232 kb on - strand, within Echvi_4552 at 5448.282 kb on + strand, within Echvi_4552 at 5448.569 kb on + strand, within Echvi_4552 at 5448.569 kb on + strand, within Echvi_4552 at 5448.569 kb on + strand, within Echvi_4552 at 5448.569 kb on + strand, within Echvi_4552 at 5448.569 kb on + strand, within Echvi_4552 at 5448.570 kb on - strand, within Echvi_4552 at 5448.571 kb on + strand, within Echvi_4552 at 5448.585 kb on + strand, within Echvi_4552 at 5448.586 kb on - strand, within Echvi_4552 at 5448.587 kb on + strand, within Echvi_4552 at 5448.589 kb on + strand, within Echvi_4552 at 5448.589 kb on + strand, within Echvi_4552 at 5448.590 kb on - strand, within Echvi_4552 at 5448.698 kb on - strand, within Echvi_4552 at 5448.715 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.745 kb on + strand, within Echvi_4552 at 5448.745 kb on + strand, within Echvi_4552 at 5448.745 kb on + strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.797 kb on + strand, within Echvi_4552 at 5448.798 kb on - strand, within Echvi_4552 at 5448.831 kb on - strand, within Echvi_4552 at 5448.831 kb on - strand, within Echvi_4552 at 5448.869 kb on - strand, within Echvi_4552 at 5448.869 kb on - strand, within Echvi_4552 at 5448.872 kb on + strand, within Echvi_4552 at 5448.872 kb on + strand, within Echvi_4552 at 5448.873 kb on - strand, within Echvi_4552 at 5448.873 kb on - strand, within Echvi_4552 at 5448.873 kb on - strand, within Echvi_4552 at 5448.873 kb on - strand, within Echvi_4552 at 5448.879 kb on + strand, within Echvi_4552 at 5448.879 kb on + strand, within Echvi_4552 at 5448.879 kb on + strand, within Echvi_4552 at 5448.880 kb on - strand, within Echvi_4552 at 5448.986 kb on + strand, within Echvi_4552 at 5448.986 kb on + strand, within Echvi_4552 at 5448.987 kb on - strand, within Echvi_4552 at 5448.987 kb on - strand, within Echvi_4552 at 5448.987 kb on - strand, within Echvi_4552 at 5449.095 kb on + strand, within Echvi_4552 at 5449.095 kb on + strand, within Echvi_4552 at 5449.096 kb on - strand, within Echvi_4552 at 5449.205 kb on + strand, within Echvi_4552 at 5449.230 kb on - strand, within Echvi_4552 at 5449.274 kb on + strand, within Echvi_4552 at 5449.274 kb on + strand, within Echvi_4552 at 5449.274 kb on + strand, within Echvi_4552 at 5449.275 kb on - strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.280 kb on + strand, within Echvi_4552 at 5449.285 kb on + strand, within Echvi_4552 at 5449.286 kb on - strand, within Echvi_4552 at 5449.403 kb on + strand, within Echvi_4552 at 5449.437 kb on + strand, within Echvi_4552 at 5449.437 kb on + strand, within Echvi_4552 at 5449.457 kb on + strand, within Echvi_4552 at 5449.457 kb on + strand, within Echvi_4552 at 5449.458 kb on - strand, within Echvi_4552 at 5449.458 kb on - strand, within Echvi_4552 at 5449.458 kb on - strand, within Echvi_4552 at 5449.459 kb on + strand, within Echvi_4552 at 5449.466 kb on + strand, within Echvi_4552 at 5449.484 kb on + strand, within Echvi_4552 at 5449.532 kb on + strand, within Echvi_4552 at 5449.532 kb on + strand, within Echvi_4552 at 5449.532 kb on + strand, within Echvi_4552 at 5449.532 kb on + strand, within Echvi_4552 at 5449.533 kb on - strand, within Echvi_4552 at 5449.679 kb on + strand, within Echvi_4552 at 5449.679 kb on + strand, within Echvi_4552 at 5449.689 kb on + strand, within Echvi_4552 at 5449.744 kb on + strand, within Echvi_4552 at 5449.783 kb on - strand, within Echvi_4552 at 5449.783 kb on - strand, within Echvi_4552 at 5449.813 kb on + strand, within Echvi_4552 at 5449.895 kb on + strand, within Echvi_4552 at 5449.895 kb on + strand, within Echvi_4552 at 5449.896 kb on - strand, within Echvi_4552 at 5449.912 kb on + strand at 5449.912 kb on + strand at 5450.065 kb on - strand at 5450.065 kb on - strand at 5450.144 kb on + strand at 5450.145 kb on - strand at 5450.183 kb on + strand at 5450.263 kb on + strand at 5450.263 kb on + strand at 5450.318 kb on + strand at 5450.323 kb on + strand at 5450.323 kb on + strand at 5450.324 kb on - strand at 5450.329 kb on - strand at 5450.329 kb on - strand at 5450.382 kb on + strand, within Echvi_4553 at 5450.423 kb on - strand, within Echvi_4553 at 5450.442 kb on - strand, within Echvi_4553 at 5450.563 kb on - strand, within Echvi_4553 at 5450.601 kb on + strand, within Echvi_4553 at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.786 kb on + strand at 5450.786 kb on + strand at 5450.794 kb on + strand at 5451.007 kb on + strand at 5451.037 kb on + strand, within Echvi_4554 at 5451.038 kb on - strand, within Echvi_4554 at 5451.090 kb on - strand, within Echvi_4554 at 5451.094 kb on - strand, within Echvi_4554 at 5451.094 kb on - strand, within Echvi_4554 at 5451.097 kb on - strand, within Echvi_4554 at 5451.135 kb on + strand, within Echvi_4554 at 5451.135 kb on + strand, within Echvi_4554 at 5451.135 kb on + strand, within Echvi_4554 at 5451.171 kb on - strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.177 kb on - strand, within Echvi_4554 at 5451.177 kb on - strand, within Echvi_4554
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 5,446,182 + Echvi_4550 0.68 +0.1 5,446,182 + Echvi_4550 0.68 -0.2 5,446,182 + Echvi_4550 0.68 -0.7 5,446,184 + Echvi_4550 0.68 +1.7 5,446,199 + Echvi_4550 0.71 +0.1 5,446,199 + Echvi_4550 0.71 +0.1 5,446,211 - Echvi_4550 0.73 +0.9 5,446,310 + Echvi_4550 0.88 +0.4 5,446,311 - Echvi_4550 0.89 -1.0 5,446,356 + +0.2 5,446,369 + -0.3 5,446,413 + -0.7 5,446,415 + -0.1 5,446,416 - +1.1 5,446,471 + Echvi_4551 0.18 -0.5 5,446,578 + Echvi_4551 0.50 -1.7 5,446,578 + Echvi_4551 0.50 -1.3 5,446,578 + Echvi_4551 0.50 -2.1 5,446,582 + Echvi_4551 0.52 -0.6 5,446,582 + Echvi_4551 0.52 -1.1 5,446,582 + Echvi_4551 0.52 -1.1 5,446,628 + Echvi_4551 0.65 -0.9 5,446,741 + +0.4 5,446,759 + -0.6 5,446,789 + +1.7 5,446,791 + +0.2 5,446,791 + -1.2 5,446,791 + +0.1 5,446,803 + +0.1 5,446,813 + -2.4 5,446,835 + -0.1 5,446,977 + -0.1 5,446,978 - -1.8 5,446,989 + -0.0 5,447,011 + +0.3 5,447,011 + -0.4 5,447,022 + -0.5 5,447,022 + +0.7 5,447,022 + -1.9 5,447,024 + -0.0 5,447,024 + +0.4 5,447,067 + -0.1 5,447,070 + -0.5 5,447,149 + -0.0 5,447,149 + +0.8 5,447,149 + +0.4 5,447,178 + +0.1 5,447,178 + +0.7 5,447,179 - -1.3 5,447,250 + +0.4 5,447,379 + +0.4 5,447,379 + -0.4 5,447,379 + -0.5 5,447,380 - -0.9 5,447,693 + Echvi_4552 0.20 -0.0 5,447,751 + Echvi_4552 0.21 -0.7 5,447,820 + Echvi_4552 0.24 -1.2 5,447,962 - Echvi_4552 0.28 +0.2 5,447,988 - Echvi_4552 0.29 +1.0 5,447,996 + Echvi_4552 0.29 +1.4 5,448,009 + Echvi_4552 0.30 -1.5 5,448,010 - Echvi_4552 0.30 +0.5 5,448,158 - Echvi_4552 0.34 +0.7 5,448,161 + Echvi_4552 0.35 -2.0 5,448,162 - Echvi_4552 0.35 +0.8 5,448,162 - Echvi_4552 0.35 -0.4 5,448,162 - Echvi_4552 0.35 -0.1 5,448,231 + Echvi_4552 0.37 +0.3 5,448,231 + Echvi_4552 0.37 +0.4 5,448,232 - Echvi_4552 0.37 +0.8 5,448,232 - Echvi_4552 0.37 -0.1 5,448,282 + Echvi_4552 0.38 +0.3 5,448,569 + Echvi_4552 0.48 +0.8 5,448,569 + Echvi_4552 0.48 +0.7 5,448,569 + Echvi_4552 0.48 -0.6 5,448,569 + Echvi_4552 0.48 +0.9 5,448,569 + Echvi_4552 0.48 +1.9 5,448,570 - Echvi_4552 0.48 +1.3 5,448,571 + Echvi_4552 0.48 -1.8 5,448,585 + Echvi_4552 0.48 -0.4 5,448,586 - Echvi_4552 0.48 +1.7 5,448,587 + Echvi_4552 0.48 +1.4 5,448,589 + Echvi_4552 0.48 +0.5 5,448,589 + Echvi_4552 0.48 -0.3 5,448,590 - Echvi_4552 0.48 +0.8 5,448,698 - Echvi_4552 0.52 -0.1 5,448,715 + Echvi_4552 0.52 +0.2 5,448,743 + Echvi_4552 0.53 -0.8 5,448,743 + Echvi_4552 0.53 +0.1 5,448,743 + Echvi_4552 0.53 -0.4 5,448,743 + Echvi_4552 0.53 +0.8 5,448,743 + Echvi_4552 0.53 +0.5 5,448,743 + Echvi_4552 0.53 +0.8 5,448,745 + Echvi_4552 0.53 +1.4 5,448,745 + Echvi_4552 0.53 +0.7 5,448,745 + Echvi_4552 0.53 -1.3 5,448,746 - Echvi_4552 0.53 -0.8 5,448,746 - Echvi_4552 0.53 +0.0 5,448,746 - Echvi_4552 0.53 -0.6 5,448,746 - Echvi_4552 0.53 -1.1 5,448,746 - Echvi_4552 0.53 -0.6 5,448,746 - Echvi_4552 0.53 +1.7 5,448,746 - Echvi_4552 0.53 +0.2 5,448,797 + Echvi_4552 0.55 -0.2 5,448,798 - Echvi_4552 0.55 +0.9 5,448,831 - Echvi_4552 0.56 +0.5 5,448,831 - Echvi_4552 0.56 +1.3 5,448,869 - Echvi_4552 0.57 +3.3 5,448,869 - Echvi_4552 0.57 -1.5 5,448,872 + Echvi_4552 0.57 +0.2 5,448,872 + Echvi_4552 0.57 +0.3 5,448,873 - Echvi_4552 0.57 -1.7 5,448,873 - Echvi_4552 0.57 +0.2 5,448,873 - Echvi_4552 0.57 +1.2 5,448,873 - Echvi_4552 0.57 +0.9 5,448,879 + Echvi_4552 0.57 -0.4 5,448,879 + Echvi_4552 0.57 +0.6 5,448,879 + Echvi_4552 0.57 +2.3 5,448,880 - Echvi_4552 0.57 +1.1 5,448,986 + Echvi_4552 0.61 +0.9 5,448,986 + Echvi_4552 0.61 +0.5 5,448,987 - Echvi_4552 0.61 -0.7 5,448,987 - Echvi_4552 0.61 +0.3 5,448,987 - Echvi_4552 0.61 +1.7 5,449,095 + Echvi_4552 0.64 +0.9 5,449,095 + Echvi_4552 0.64 -0.5 5,449,096 - Echvi_4552 0.64 +0.7 5,449,205 + Echvi_4552 0.68 +0.2 5,449,230 - Echvi_4552 0.69 -1.1 5,449,274 + Echvi_4552 0.70 -0.1 5,449,274 + Echvi_4552 0.70 +0.4 5,449,274 + Echvi_4552 0.70 -0.4 5,449,275 - Echvi_4552 0.70 +0.3 5,449,276 + Echvi_4552 0.70 +1.2 5,449,276 + Echvi_4552 0.70 +0.6 5,449,276 + Echvi_4552 0.70 -0.1 5,449,276 + Echvi_4552 0.70 -0.6 5,449,276 + Echvi_4552 0.70 +0.7 5,449,276 + Echvi_4552 0.70 -1.3 5,449,276 + Echvi_4552 0.70 -1.0 5,449,276 + Echvi_4552 0.70 +0.1 5,449,277 - Echvi_4552 0.70 -0.3 5,449,277 - Echvi_4552 0.70 -0.4 5,449,277 - Echvi_4552 0.70 +0.2 5,449,277 - Echvi_4552 0.70 +1.1 5,449,277 - Echvi_4552 0.70 +0.5 5,449,277 - Echvi_4552 0.70 +0.7 5,449,280 + Echvi_4552 0.70 +1.1 5,449,285 + Echvi_4552 0.70 -0.2 5,449,286 - Echvi_4552 0.70 +0.3 5,449,403 + Echvi_4552 0.74 +1.9 5,449,437 + Echvi_4552 0.75 -0.9 5,449,437 + Echvi_4552 0.75 +0.3 5,449,457 + Echvi_4552 0.76 -0.5 5,449,457 + Echvi_4552 0.76 +0.5 5,449,458 - Echvi_4552 0.76 -0.4 5,449,458 - Echvi_4552 0.76 -1.6 5,449,458 - Echvi_4552 0.76 -0.8 5,449,459 + Echvi_4552 0.76 -1.1 5,449,466 + Echvi_4552 0.76 -1.6 5,449,484 + Echvi_4552 0.77 +0.1 5,449,532 + Echvi_4552 0.78 -0.5 5,449,532 + Echvi_4552 0.78 +0.3 5,449,532 + Echvi_4552 0.78 +0.4 5,449,532 + Echvi_4552 0.78 +0.6 5,449,533 - Echvi_4552 0.78 +1.4 5,449,679 + Echvi_4552 0.83 -1.1 5,449,679 + Echvi_4552 0.83 +0.7 5,449,689 + Echvi_4552 0.83 -1.5 5,449,744 + Echvi_4552 0.85 -0.3 5,449,783 - Echvi_4552 0.86 +0.1 5,449,783 - Echvi_4552 0.86 -0.6 5,449,813 + Echvi_4552 0.87 +0.3 5,449,895 + Echvi_4552 0.90 -0.9 5,449,895 + Echvi_4552 0.90 +1.7 5,449,896 - Echvi_4552 0.90 +0.1 5,449,912 + +0.9 5,449,912 + +1.1 5,450,065 - -0.7 5,450,065 - +0.6 5,450,144 + -0.4 5,450,145 - -1.0 5,450,183 + +1.7 5,450,263 + +0.5 5,450,263 + +1.3 5,450,318 + +0.2 5,450,323 + +2.1 5,450,323 + +1.4 5,450,324 - -0.7 5,450,329 - +1.4 5,450,329 - +0.3 5,450,382 + Echvi_4553 0.14 -0.7 5,450,423 - Echvi_4553 0.23 +0.9 5,450,442 - Echvi_4553 0.27 +0.1 5,450,563 - Echvi_4553 0.53 -1.0 5,450,601 + Echvi_4553 0.61 +1.7 5,450,784 + +1.2 5,450,784 + +0.0 5,450,784 + +0.6 5,450,784 + -0.1 5,450,784 + -0.3 5,450,784 + -0.2 5,450,784 + +0.1 5,450,784 + -0.6 5,450,785 - +0.6 5,450,785 - -0.3 5,450,785 - -0.5 5,450,785 - +1.7 5,450,785 - +0.4 5,450,786 + +0.2 5,450,786 + +0.3 5,450,794 + +0.3 5,451,007 + -2.5 5,451,037 + Echvi_4554 0.11 -0.0 5,451,038 - Echvi_4554 0.11 +0.8 5,451,090 - Echvi_4554 0.13 +0.8 5,451,094 - Echvi_4554 0.13 -0.9 5,451,094 - Echvi_4554 0.13 -0.4 5,451,097 - Echvi_4554 0.13 -0.3 5,451,135 + Echvi_4554 0.15 +0.2 5,451,135 + Echvi_4554 0.15 +1.9 5,451,135 + Echvi_4554 0.15 +0.1 5,451,171 - Echvi_4554 0.17 +1.5 5,451,176 + Echvi_4554 0.17 +0.5 5,451,176 + Echvi_4554 0.17 +0.2 5,451,176 + Echvi_4554 0.17 -1.2 5,451,176 + Echvi_4554 0.17 +0.3 5,451,176 + Echvi_4554 0.17 +0.7 5,451,177 - Echvi_4554 0.17 +0.1 5,451,177 - Echvi_4554 0.17 +0.4
Or see this region's nucleotide sequence