Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3343

Experiment: D-Raffinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose (C)
3,945,432	+		Echvi_3341	0.34	-0.5
3,945,432	+		Echvi_3341	0.34	-0.1
3,945,490	+		Echvi_3341	0.47	+0.3
3,945,491	-		Echvi_3341	0.48	+0.0
3,945,492	+		Echvi_3341	0.48	+2.0
3,945,492	+		Echvi_3341	0.48	-0.7
3,945,492	+		Echvi_3341	0.48	-0.4
3,945,493	-		Echvi_3341	0.48	-0.5
3,945,493	-		Echvi_3341	0.48	+0.8
3,945,494	+		Echvi_3341	0.48	-0.6
3,945,495	-		Echvi_3341	0.49	-0.9
3,945,502	-		Echvi_3341	0.50	-1.6
3,945,502	-		Echvi_3341	0.50	+0.1
3,945,512	+		Echvi_3341	0.52	-1.8
3,945,512	+		Echvi_3341	0.52	+0.2
3,945,680	+				+0.8
3,945,689	+				-1.1
3,945,690	-				+0.1
3,945,690	-				-1.7
3,945,690	-				-0.7
3,945,796	-				-0.5
3,945,829	+				+0.8
3,945,847	+				+0.2
3,945,848	-				-0.6
3,945,855	-		Echvi_3342	0.11	-0.4
3,945,855	-		Echvi_3342	0.11	-0.9
3,945,868	-		Echvi_3342	0.14	-0.4
3,945,894	-		Echvi_3342	0.20	+0.6
3,945,928	+		Echvi_3342	0.28	-0.1
3,945,928	+		Echvi_3342	0.28	+0.2
3,946,013	+		Echvi_3342	0.48	-1.1
3,946,014	-		Echvi_3342	0.48	-0.6
3,946,014	-		Echvi_3342	0.48	-0.1
3,946,014	-		Echvi_3342	0.48	+0.3
3,946,136	+		Echvi_3342	0.77	-1.6
3,946,137	-		Echvi_3342	0.78	-0.5
3,946,137	-		Echvi_3342	0.78	+0.4
3,946,176	-		Echvi_3342	0.87	+0.5
3,946,223	-				+2.4
3,946,251	-				-0.5
3,946,353	-				-0.2
3,946,384	+				-0.4
3,946,440	+				-0.4
3,946,442	+				-0.1
3,946,473	-				-0.0
3,946,473	-				-0.6
3,946,473	-				+0.5
3,946,490	+				-2.3
3,946,490	+				-2.2
3,946,490	+				+1.4
3,946,490	+				+1.5
3,946,491	-				+0.4
3,946,491	-				+0.8
3,946,491	-				-1.6
3,946,511	-		Echvi_3343	0.11	-0.3
3,946,535	+		Echvi_3343	0.12	+0.8
3,946,536	-		Echvi_3343	0.12	-1.1
3,946,536	-		Echvi_3343	0.12	-0.1
3,946,546	-		Echvi_3343	0.13	-0.5
3,946,546	-		Echvi_3343	0.13	-0.3
3,946,566	-		Echvi_3343	0.14	-0.1
3,946,573	-		Echvi_3343	0.15	+0.2
3,946,579	+		Echvi_3343	0.15	-1.2
3,946,579	+		Echvi_3343	0.15	-1.0
3,946,614	+		Echvi_3343	0.17	+0.0
3,946,651	+		Echvi_3343	0.19	-0.8
3,946,652	-		Echvi_3343	0.19	-0.5
3,946,652	-		Echvi_3343	0.19	-1.0
3,946,663	+		Echvi_3343	0.20	+0.2
3,946,663	+		Echvi_3343	0.20	-0.1
3,946,674	-		Echvi_3343	0.21	-0.5
3,946,756	+		Echvi_3343	0.26	-1.1
3,946,758	+				-0.8
3,946,758	+		Echvi_3343	0.26	-0.6
3,946,758	+		Echvi_3343	0.26	+0.0
3,946,759	-		Echvi_3343	0.26	+0.1
3,946,759	-		Echvi_3343	0.26	-1.2
3,946,759	-		Echvi_3343	0.26	-1.0
3,946,759	-		Echvi_3343	0.26	+1.0
3,946,759	-		Echvi_3343	0.26	-0.5
3,946,762	+		Echvi_3343	0.26	+0.7
3,946,762	+		Echvi_3343	0.26	+0.8
3,946,796	-		Echvi_3343	0.28	-0.1
3,946,859	-		Echvi_3343	0.32	-1.3
3,946,859	-		Echvi_3343	0.32	-0.2
3,947,016	+		Echvi_3343	0.41	+1.2
3,947,016	+		Echvi_3343	0.41	-0.1
3,947,017	-		Echvi_3343	0.41	-1.1
3,947,059	+		Echvi_3343	0.44	-0.1
3,947,131	+		Echvi_3343	0.48	-0.4
3,947,131	+		Echvi_3343	0.48	-0.4
3,947,198	-		Echvi_3343	0.52	-1.8
3,947,198	-		Echvi_3343	0.52	+1.0
3,947,198	-		Echvi_3343	0.52	-0.1
3,947,226	-		Echvi_3343	0.54	-2.4
3,947,282	+		Echvi_3343	0.57	+0.4
3,947,302	+		Echvi_3343	0.58	+0.6
3,947,302	+				+1.1
3,947,302	+		Echvi_3343	0.58	-0.8
3,947,303	-		Echvi_3343	0.58	+0.4
3,947,303	-				+1.1
3,947,351	-		Echvi_3343	0.61	-0.5
3,947,354	+		Echvi_3343	0.61	-0.7
3,947,364	+		Echvi_3343	0.62	-0.4
3,947,370	+		Echvi_3343	0.62	+0.4
3,947,381	-		Echvi_3343	0.63	-0.2
3,947,562	+		Echvi_3343	0.74	-0.3
3,947,582	-		Echvi_3343	0.75	-0.2
3,947,582	-		Echvi_3343	0.75	+0.2
3,947,680	-		Echvi_3343	0.81	+0.5
3,947,695	-		Echvi_3343	0.81	+0.1
3,947,780	+		Echvi_3343	0.86	-0.6
3,947,781	-		Echvi_3343	0.87	+0.2
3,947,805	-		Echvi_3343	0.88	-0.6
3,947,805	-		Echvi_3343	0.88	+0.7
3,947,837	-		Echvi_3343	0.90	+0.3
3,947,860	-				-0.1
3,947,877	+				-0.4
3,947,877	+				-2.4
3,947,877	+				+0.0
3,947,949	+				-1.1
3,947,949	+				-1.0
3,947,950	-				+0.7
3,947,953	+				-0.3
3,947,988	+				+0.2
3,948,006	+				-0.6
3,948,006	+				+0.2
3,948,042	+				-0.3
3,948,154	+		Echvi_3344	0.25	-0.3
3,948,155	-		Echvi_3344	0.25	-1.1
3,948,162	+		Echvi_3344	0.27	+0.3
3,948,162	+		Echvi_3344	0.27	+0.4
3,948,163	-		Echvi_3344	0.27	-1.3
3,948,169	+		Echvi_3344	0.28	-0.6
3,948,169	+		Echvi_3344	0.28	-1.4
3,948,172	+		Echvi_3344	0.28	+0.4
3,948,172	+		Echvi_3344	0.28	+0.1
3,948,173	-		Echvi_3344	0.29	-1.2
3,948,348	+		Echvi_3344	0.60	+2.0
3,948,349	-		Echvi_3344	0.60	+0.8
3,948,349	-		Echvi_3344	0.60	+0.0
3,948,349	-		Echvi_3344	0.60	+0.1
3,948,429	-		Echvi_3344	0.74	-2.6
3,948,429	-		Echvi_3344	0.74	-1.6
3,948,434	-		Echvi_3344	0.75	-0.2
3,948,480	+		Echvi_3344	0.83	-1.9
3,948,481	-		Echvi_3344	0.83	+0.7
3,948,481	-		Echvi_3344	0.83	+0.3
3,948,515	-		Echvi_3344	0.89	-0.7
3,948,563	-				-1.8
3,948,563	-				+1.5
3,948,584	-				+0.9
3,948,593	-				-1.6
3,948,616	-				-0.4
3,948,631	+				+0.8
3,948,660	-				+0.1
3,948,688	+				+0.1
3,948,724	+				+0.5
3,948,744	+				-2.0
3,948,744	+				+1.0
3,948,744	+				+0.8
3,948,755	+				-2.4
3,948,784	-				+1.2
3,948,859	+		Echvi_3345	0.14	-0.2
3,948,859	+		Echvi_3345	0.14	+0.4
3,948,915	-		Echvi_3345	0.19	-0.5
3,948,970	+		Echvi_3345	0.25	-0.2
3,948,970	+		Echvi_3345	0.25	-1.2
3,948,975	+		Echvi_3345	0.25	-0.6
3,948,975	+		Echvi_3345	0.25	+0.2
3,949,000	+		Echvi_3345	0.28	-0.5
3,949,000	+		Echvi_3345	0.28	+0.6
3,949,000	+		Echvi_3345	0.28	-1.1
3,949,000	+		Echvi_3345	0.28	-0.1
3,949,001	-		Echvi_3345	0.28	+0.4
3,949,001	-		Echvi_3345	0.28	-1.1
3,949,001	-		Echvi_3345	0.28	+0.3