Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2507

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2505 and Echvi_2506 are separated by 74 nucleotidesEchvi_2506 and Echvi_2507 are separated by 183 nucleotidesEchvi_2507 and Echvi_2508 are separated by 3 nucleotidesEchvi_2508 and Echvi_2509 are separated by 3 nucleotides Echvi_2505: Echvi_2505 - S23 ribosomal protein., at 2,978,004 to 2,978,384 _2505 Echvi_2506: Echvi_2506 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 2,978,459 to 2,979,028 _2506 Echvi_2507: Echvi_2507 - anthranilate phosphoribosyltransferase, at 2,979,212 to 2,980,228 _2507 Echvi_2508: Echvi_2508 - Indole-3-glycerol phosphate synthase, at 2,980,232 to 2,981,050 _2508 Echvi_2509: Echvi_2509 - Phosphoribosylanthranilate isomerase, at 2,981,054 to 2,981,674 _2509 Position (kb) 2979 2980 2981Strain fitness (log2 ratio) -3 -2 -1 0 1at 2978.215 kb on - strand, within Echvi_2505at 2978.261 kb on - strand, within Echvi_2505at 2978.293 kb on - strand, within Echvi_2505at 2978.453 kb on + strandat 2978.454 kb on - strandat 2978.455 kb on + strandat 2978.466 kb on + strandat 2978.472 kb on + strandat 2978.512 kb on + strandat 2978.666 kb on + strand, within Echvi_2506at 2978.843 kb on + strand, within Echvi_2506at 2978.892 kb on + strand, within Echvi_2506at 2978.920 kb on + strand, within Echvi_2506at 2978.943 kb on - strand, within Echvi_2506at 2979.018 kb on + strandat 2979.019 kb on - strandat 2979.031 kb on - strandat 2979.053 kb on - strandat 2979.063 kb on - strandat 2979.089 kb on + strandat 2979.115 kb on + strandat 2979.475 kb on + strand, within Echvi_2507at 2979.736 kb on + strand, within Echvi_2507at 2979.875 kb on + strand, within Echvi_2507at 2980.239 kb on + strandat 2980.993 kb on + strandat 2980.993 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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2,978,215 - Echvi_2505 0.55 -0.4
2,978,261 - Echvi_2505 0.67 -1.4
2,978,293 - Echvi_2505 0.76 -1.1
2,978,453 + +0.0
2,978,454 - +0.0
2,978,455 + +0.8
2,978,466 + -1.0
2,978,472 + -1.6
2,978,512 + -2.4
2,978,666 + Echvi_2506 0.36 -2.7
2,978,843 + Echvi_2506 0.67 +1.0
2,978,892 + Echvi_2506 0.76 -2.4
2,978,920 + Echvi_2506 0.81 -2.7
2,978,943 - Echvi_2506 0.85 -1.2
2,979,018 + +0.9
2,979,019 - -0.1
2,979,031 - -1.2
2,979,053 - -3.1
2,979,063 - -0.4
2,979,089 + -1.6
2,979,115 + +1.6
2,979,475 + Echvi_2507 0.26 -1.4
2,979,736 + Echvi_2507 0.52 -2.8
2,979,875 + Echvi_2507 0.65 -0.4
2,980,239 + -1.6
2,980,993 + +1.4
2,980,993 + +1.4

Or see this region's nucleotide sequence