Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2238

Experiment: D-Raffinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose (C)
2,660,933	+				+0.2
2,660,988	+		Echvi_2236	0.17	+0.1
2,660,988	+		Echvi_2236	0.17	+0.3
2,661,000	+		Echvi_2236	0.23	+0.6
2,661,006	+		Echvi_2236	0.26	-1.4
2,661,006	+		Echvi_2236	0.26	-1.0
2,661,006	+		Echvi_2236	0.26	+1.2
2,661,006	+		Echvi_2236	0.26	+0.0
2,661,006	+		Echvi_2236	0.26	-0.6
2,661,006	+		Echvi_2236	0.26	+1.2
2,661,007	-		Echvi_2236	0.26	-1.5
2,661,013	+		Echvi_2236	0.29	-0.9
2,661,047	+		Echvi_2236	0.45	+1.3
2,661,093	-		Echvi_2236	0.68	+0.5
2,661,133	-		Echvi_2236	0.87	-0.3
2,661,133	-		Echvi_2236	0.87	-1.1
2,661,133	-		Echvi_2236	0.87	+0.7
2,661,133	-		Echvi_2236	0.87	-0.6
2,661,133	-		Echvi_2236	0.87	-0.8
2,661,133	-		Echvi_2236	0.87	-0.4
2,661,141	+				-0.7
2,661,141	+				+0.3
2,661,141	+				-0.8
2,661,142	-				+0.3
2,661,142	-				-0.8
2,661,142	-				+1.7
2,661,142	-				-0.9
2,661,142	-				-0.1
2,661,142	-				-0.3
2,661,142	-				-0.5
2,661,142	-				+0.7
2,661,142	-				-1.8
2,661,142	-				+0.1
2,661,142	-				+0.1
2,661,142	-				+0.4
2,661,152	-				+0.1
2,661,152	-				-0.5
2,661,156	-				-1.1
2,661,156	-				-1.6
2,661,156	-				-1.2
2,661,158	-				-1.6
2,661,165	-				+0.3
2,661,172	+				+1.4
2,661,197	+				+0.3
2,661,197	+				+0.3
2,661,206	+				+0.4
2,661,219	+				-0.7
2,661,231	-				+1.7
2,661,242	-				-0.1
2,661,290	+				-0.0
2,661,290	+				+1.9
2,661,291	-				+0.0
2,661,291	-				+0.4
2,661,307	+				+0.9
2,661,319	+				+1.0
2,661,319	+				+0.2
2,661,320	-				+0.4
2,661,320	-				+0.1
2,661,327	+				+0.4
2,661,327	+				-0.6
2,661,330	+				-1.1
2,661,330	+				-0.4
2,661,331	-				-0.3
2,661,331	-				-0.4
2,661,345	-				-2.4
2,661,357	-				-0.1
2,661,474	-				+0.2
2,661,474	-				-1.3
2,661,474	-				+0.7
2,661,474	-				-0.2
2,661,534	-				-1.6
2,661,535	+				-0.1
2,661,535	+				-0.7
2,661,536	-				+0.6
2,661,536	-				-0.5
2,661,536	-				+2.0
2,661,536	-				+0.0
2,661,536	-				-0.6
2,661,536	-				+2.1
2,661,536	-				-0.4
2,661,539	+				+0.4
2,661,539	+				+0.7
2,661,544	-				+0.1
2,661,561	-				+0.4
2,661,588	-		Echvi_2237	0.19	+2.7
2,661,588	-		Echvi_2237	0.19	+0.6
2,661,669	+		Echvi_2237	0.57	+0.2
2,661,670	-		Echvi_2237	0.58	+0.1
2,661,673	+		Echvi_2237	0.59	+0.9
2,661,673	+		Echvi_2237	0.59	+0.8
2,661,673	+		Echvi_2237	0.59	-0.4
2,661,674	-		Echvi_2237	0.60	-0.1
2,661,699	+		Echvi_2237	0.71	+1.7
2,661,699	+		Echvi_2237	0.71	+0.8
2,661,720	+		Echvi_2237	0.81	+0.4
2,661,720	+		Echvi_2237	0.81	+0.6
2,661,720	+		Echvi_2237	0.81	-1.1
2,661,721	-		Echvi_2237	0.82	+0.0
2,661,721	-		Echvi_2237	0.82	-0.1
2,661,749	+				+1.7
2,661,749	+				-0.1
2,661,804	+				-1.2
2,661,805	-				+1.9
2,661,817	-				-0.6
2,661,822	-				+0.0
2,661,850	+				-0.8
2,661,850	+				-1.8
2,661,850	+				+0.1
2,661,851	-				-0.5
2,661,851	-				-0.3
2,661,851	-				-0.5
2,661,851	-				+0.8
2,661,858	+				+0.2
2,661,859	-				+0.8
2,661,924	-		Echvi_2238	0.12	-1.1
2,661,925	+		Echvi_2238	0.12	+0.0
2,661,963	-		Echvi_2238	0.23	-0.5
2,661,981	-		Echvi_2238	0.28	-0.2
2,662,089	+		Echvi_2238	0.60	-0.7
2,662,089	+		Echvi_2238	0.60	-2.0
2,662,262	+				+0.1
2,662,263	-				+0.4
2,662,269	-				-1.9
2,662,298	-				+0.1
2,662,312	-				-0.2
2,662,335	-				+0.7
2,662,335	-				-0.8
2,662,519	+				+0.1
2,662,582	+				+0.7
2,662,582	+				-0.8
2,662,636	+		Echvi_2239	0.12	-0.5
2,662,648	-		Echvi_2239	0.14	+0.0
2,662,648	-		Echvi_2239	0.14	-0.5
2,662,661	-		Echvi_2239	0.16	-0.8
2,662,722	-		Echvi_2239	0.24	+0.5
2,662,722	-		Echvi_2239	0.24	-0.4
2,662,758	-		Echvi_2239	0.28	+0.5
2,662,777	-		Echvi_2239	0.31	-0.3
2,662,777	-		Echvi_2239	0.31	-1.2
2,662,779	+		Echvi_2239	0.31	+2.1
2,662,855	+		Echvi_2239	0.41	+2.0
2,662,871	+		Echvi_2239	0.43	-0.3
2,662,871	+		Echvi_2239	0.43	-1.1
2,662,872	-		Echvi_2239	0.43	+0.2
2,662,872	-		Echvi_2239	0.43	+0.4
2,662,872	-		Echvi_2239	0.43	-0.6
2,662,878	+		Echvi_2239	0.44	+0.8
2,662,879	-		Echvi_2239	0.44	+0.4
2,662,879	-		Echvi_2239	0.44	+0.1
2,662,933	-		Echvi_2239	0.51	+0.3
2,662,933	-		Echvi_2239	0.51	+0.9
2,662,933	-		Echvi_2239	0.51	+0.5
2,662,933	-		Echvi_2239	0.51	-0.7
2,662,949	+		Echvi_2239	0.53	-0.0
2,662,950	-		Echvi_2239	0.53	+0.7
2,662,952	-		Echvi_2239	0.54	+1.1
2,662,953	+		Echvi_2239	0.54	+1.3
2,662,953	+		Echvi_2239	0.54	-0.5
2,662,953	+		Echvi_2239	0.54	+0.8
2,662,953	+		Echvi_2239	0.54	+1.9
2,662,954	-		Echvi_2239	0.54	-0.4
2,663,006	-		Echvi_2239	0.61	+0.7
2,663,011	+		Echvi_2239	0.61	+2.0
2,663,011	+		Echvi_2239	0.61	-0.0
2,663,011	+		Echvi_2239	0.61	+0.6
2,663,011	+		Echvi_2239	0.61	-0.9
2,663,011	+		Echvi_2239	0.61	+0.6
2,663,012	-		Echvi_2239	0.61	-1.1
2,663,012	-		Echvi_2239	0.61	-0.0
2,663,012	-		Echvi_2239	0.61	+0.0
2,663,012	-		Echvi_2239	0.61	-0.7
2,663,012	-		Echvi_2239	0.61	+0.8
2,663,012	-		Echvi_2239	0.61	+0.9
2,663,103	+		Echvi_2239	0.73	-1.2
2,663,131	+		Echvi_2239	0.77	-0.4
2,663,151	-		Echvi_2239	0.79	+0.4
2,663,151	-		Echvi_2239	0.79	+0.8
2,663,179	-		Echvi_2239	0.83	-0.2
2,663,183	-		Echvi_2239	0.84	+1.3
2,663,183	-		Echvi_2239	0.84	+0.1
2,663,201	-		Echvi_2239	0.86	-0.6