Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0793

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0792 and Echvi_0793 are separated by 277 nucleotidesEchvi_0793 and Echvi_0794 are separated by 11 nucleotides Echvi_0792: Echvi_0792 - Aminopeptidase N, at 903,740 to 905,365 _0792 Echvi_0793: Echvi_0793 - hypothetical protein, at 905,643 to 907,007 _0793 Echvi_0794: Echvi_0794 - choline/carnitine/betaine transport, at 907,019 to 908,608 _0794 Position (kb) 905 906 907 908Strain fitness (log2 ratio) -2 -1 0 1 2at 904.684 kb on - strand, within Echvi_0792at 904.684 kb on - strand, within Echvi_0792at 904.688 kb on - strand, within Echvi_0792at 904.719 kb on + strand, within Echvi_0792at 904.719 kb on + strand, within Echvi_0792at 904.719 kb on + strand, within Echvi_0792at 904.725 kb on + strand, within Echvi_0792at 904.793 kb on + strand, within Echvi_0792at 904.793 kb on + strand, within Echvi_0792at 904.793 kb on + strand, within Echvi_0792at 904.793 kb on + strand, within Echvi_0792at 904.793 kb on + strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.795 kb on + strand, within Echvi_0792at 904.798 kb on - strand, within Echvi_0792at 904.849 kb on + strand, within Echvi_0792at 904.969 kb on + strand, within Echvi_0792at 904.970 kb on - strand, within Echvi_0792at 904.971 kb on + strandat 904.971 kb on + strand, within Echvi_0792at 904.974 kb on + strand, within Echvi_0792at 904.975 kb on - strand, within Echvi_0792at 905.007 kb on + strand, within Echvi_0792at 905.007 kb on + strand, within Echvi_0792at 905.194 kb on - strand, within Echvi_0792at 905.194 kb on - strand, within Echvi_0792at 905.293 kb on + strandat 905.316 kb on + strandat 905.338 kb on + strandat 905.338 kb on + strandat 905.401 kb on - strandat 905.408 kb on + strandat 905.413 kb on - strandat 905.420 kb on - strandat 905.427 kb on + strandat 905.428 kb on - strandat 905.429 kb on + strandat 905.430 kb on - strandat 905.678 kb on - strandat 905.682 kb on + strandat 905.683 kb on - strandat 905.810 kb on + strand, within Echvi_0793at 905.812 kb on + strand, within Echvi_0793at 905.812 kb on + strand, within Echvi_0793at 905.812 kb on + strand, within Echvi_0793at 905.812 kb on + strand, within Echvi_0793at 905.813 kb on - strand, within Echvi_0793at 905.852 kb on + strand, within Echvi_0793at 905.853 kb on - strand, within Echvi_0793at 905.864 kb on - strand, within Echvi_0793at 905.899 kb on - strand, within Echvi_0793at 905.899 kb on - strand, within Echvi_0793at 905.899 kb on - strand, within Echvi_0793at 905.907 kb on + strand, within Echvi_0793at 905.907 kb on + strand, within Echvi_0793at 905.908 kb on - strand, within Echvi_0793at 905.930 kb on - strand, within Echvi_0793at 905.930 kb on - strand, within Echvi_0793at 906.057 kb on + strand, within Echvi_0793at 906.058 kb on - strand, within Echvi_0793at 906.067 kb on + strand, within Echvi_0793at 906.068 kb on - strand, within Echvi_0793at 906.080 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.091 kb on - strand, within Echvi_0793at 906.091 kb on - strand, within Echvi_0793at 906.092 kb on + strand, within Echvi_0793at 906.092 kb on + strand, within Echvi_0793at 906.092 kb on + strand, within Echvi_0793at 906.138 kb on + strand, within Echvi_0793at 906.139 kb on - strand, within Echvi_0793at 906.171 kb on + strand, within Echvi_0793at 906.172 kb on - strand, within Echvi_0793at 906.172 kb on - strand, within Echvi_0793at 906.174 kb on + strand, within Echvi_0793at 906.175 kb on - strand, within Echvi_0793at 906.175 kb on - strand, within Echvi_0793at 906.178 kb on + strand, within Echvi_0793at 906.303 kb on + strand, within Echvi_0793at 906.304 kb on - strand, within Echvi_0793at 906.308 kb on + strand, within Echvi_0793at 906.324 kb on + strand, within Echvi_0793at 906.324 kb on + strand, within Echvi_0793at 906.325 kb on - strand, within Echvi_0793at 906.339 kb on - strand, within Echvi_0793at 906.339 kb on - strand, within Echvi_0793at 906.350 kb on + strand, within Echvi_0793at 906.351 kb on - strand, within Echvi_0793at 906.351 kb on - strand, within Echvi_0793at 906.390 kb on + strand, within Echvi_0793at 906.390 kb on + strand, within Echvi_0793at 906.391 kb on - strand, within Echvi_0793at 906.413 kb on - strand, within Echvi_0793at 906.441 kb on + strand, within Echvi_0793at 906.537 kb on + strand, within Echvi_0793at 906.537 kb on + strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.540 kb on + strand, within Echvi_0793at 906.541 kb on - strand, within Echvi_0793at 906.541 kb on - strand, within Echvi_0793at 906.541 kb on - strand, within Echvi_0793at 906.541 kb on - strand, within Echvi_0793at 906.546 kb on + strand, within Echvi_0793at 906.547 kb on - strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.619 kb on - strand, within Echvi_0793at 906.638 kb on + strand, within Echvi_0793at 906.638 kb on + strand, within Echvi_0793at 906.639 kb on - strand, within Echvi_0793at 906.639 kb on - strand, within Echvi_0793at 906.639 kb on - strand, within Echvi_0793at 906.639 kb on - strand, within Echvi_0793at 906.645 kb on + strand, within Echvi_0793at 906.646 kb on - strand, within Echvi_0793at 906.709 kb on - strand, within Echvi_0793at 906.710 kb on + strand, within Echvi_0793at 906.764 kb on - strand, within Echvi_0793at 906.764 kb on - strand, within Echvi_0793at 906.831 kb on + strand, within Echvi_0793at 906.832 kb on - strand, within Echvi_0793at 906.852 kb on + strand, within Echvi_0793at 906.852 kb on + strand, within Echvi_0793at 906.913 kb on + strandat 906.913 kb on + strandat 906.918 kb on + strandat 906.986 kb on + strandat 906.986 kb on + strandat 906.987 kb on - strandat 906.989 kb on + strandat 906.990 kb on - strandat 906.991 kb on + strandat 906.992 kb on - strandat 906.992 kb on - strandat 906.992 kb on - strandat 906.997 kb on - strandat 906.999 kb on + strandat 907.000 kb on - strandat 907.000 kb on - strandat 907.000 kb on - strandat 907.000 kb on - strandat 907.041 kb on + strandat 907.042 kb on - strandat 907.081 kb on + strandat 907.081 kb on + strandat 907.081 kb on + strandat 907.214 kb on + strand, within Echvi_0794at 907.214 kb on + strand, within Echvi_0794at 907.241 kb on - strandat 907.279 kb on + strand, within Echvi_0794at 907.365 kb on - strand, within Echvi_0794at 907.393 kb on + strand, within Echvi_0794at 907.394 kb on - strand, within Echvi_0794at 907.394 kb on - strand, within Echvi_0794at 907.470 kb on + strand, within Echvi_0794at 907.474 kb on - strand, within Echvi_0794at 907.582 kb on + strand, within Echvi_0794at 907.583 kb on - strand, within Echvi_0794at 907.583 kb on - strand, within Echvi_0794at 907.599 kb on + strand, within Echvi_0794at 907.666 kb on + strand, within Echvi_0794at 907.666 kb on + strand, within Echvi_0794at 907.667 kb on - strand, within Echvi_0794at 907.667 kb on - strand, within Echvi_0794at 907.667 kb on - strand, within Echvi_0794at 907.670 kb on + strand, within Echvi_0794at 907.670 kb on + strand, within Echvi_0794at 907.707 kb on + strand, within Echvi_0794at 907.708 kb on - strand, within Echvi_0794at 907.798 kb on - strand, within Echvi_0794at 907.798 kb on - strand, within Echvi_0794at 907.848 kb on + strand, within Echvi_0794at 907.908 kb on + strand, within Echvi_0794at 907.984 kb on - strand, within Echvi_0794

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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904,684 - Echvi_0792 0.58 -1.0
904,684 - Echvi_0792 0.58 +1.0
904,688 - Echvi_0792 0.58 +0.5
904,719 + Echvi_0792 0.60 -1.5
904,719 + Echvi_0792 0.60 +1.9
904,719 + Echvi_0792 0.60 +1.6
904,725 + Echvi_0792 0.61 -0.2
904,793 + Echvi_0792 0.65 +2.4
904,793 + Echvi_0792 0.65 +0.3
904,793 + Echvi_0792 0.65 -0.1
904,793 + Echvi_0792 0.65 +0.1
904,793 + Echvi_0792 0.65 +2.0
904,794 - Echvi_0792 0.65 -0.0
904,794 - Echvi_0792 0.65 +1.9
904,794 - Echvi_0792 0.65 -0.7
904,794 - Echvi_0792 0.65 +0.9
904,794 - Echvi_0792 0.65 -0.1
904,794 - Echvi_0792 0.65 -1.6
904,794 - Echvi_0792 0.65 +0.1
904,795 + Echvi_0792 0.65 +0.3
904,798 - Echvi_0792 0.65 +0.7
904,849 + Echvi_0792 0.68 +1.5
904,969 + Echvi_0792 0.76 +0.2
904,970 - Echvi_0792 0.76 +0.3
904,971 + +2.5
904,971 + Echvi_0792 0.76 -0.9
904,974 + Echvi_0792 0.76 -1.7
904,975 - Echvi_0792 0.76 +0.1
905,007 + Echvi_0792 0.78 +0.4
905,007 + Echvi_0792 0.78 +0.1
905,194 - Echvi_0792 0.89 +2.1
905,194 - Echvi_0792 0.89 -0.1
905,293 + +0.2
905,316 + +0.3
905,338 + -0.8
905,338 + +1.1
905,401 - +0.3
905,408 + -0.2
905,413 - +0.7
905,420 - +1.2
905,427 + -0.3
905,428 - -0.9
905,429 + +0.5
905,430 - -0.9
905,678 - -0.1
905,682 + -0.8
905,683 - -0.1
905,810 + Echvi_0793 0.12 +1.1
905,812 + Echvi_0793 0.12 -0.9
905,812 + Echvi_0793 0.12 -0.8
905,812 + Echvi_0793 0.12 +0.9
905,812 + Echvi_0793 0.12 +0.3
905,813 - Echvi_0793 0.12 -0.3
905,852 + Echvi_0793 0.15 -1.0
905,853 - Echvi_0793 0.15 -0.6
905,864 - Echvi_0793 0.16 -0.3
905,899 - Echvi_0793 0.19 -0.6
905,899 - Echvi_0793 0.19 -0.4
905,899 - Echvi_0793 0.19 +0.7
905,907 + Echvi_0793 0.19 -0.6
905,907 + Echvi_0793 0.19 -0.2
905,908 - Echvi_0793 0.19 -0.9
905,930 - Echvi_0793 0.21 -1.1
905,930 - Echvi_0793 0.21 -0.4
906,057 + Echvi_0793 0.30 -0.2
906,058 - Echvi_0793 0.30 +0.6
906,067 + Echvi_0793 0.31 +0.8
906,068 - Echvi_0793 0.31 +0.2
906,080 + Echvi_0793 0.32 -0.3
906,090 + Echvi_0793 0.33 +0.9
906,090 + Echvi_0793 0.33 +0.1
906,090 + Echvi_0793 0.33 -0.3
906,090 + Echvi_0793 0.33 +0.2
906,090 + Echvi_0793 0.33 +0.3
906,091 - Echvi_0793 0.33 +0.4
906,091 - Echvi_0793 0.33 +0.2
906,092 + Echvi_0793 0.33 -0.1
906,092 + Echvi_0793 0.33 +1.1
906,092 + Echvi_0793 0.33 -0.4
906,138 + Echvi_0793 0.36 +0.3
906,139 - Echvi_0793 0.36 -0.3
906,171 + Echvi_0793 0.39 -0.2
906,172 - Echvi_0793 0.39 -0.7
906,172 - Echvi_0793 0.39 +2.0
906,174 + Echvi_0793 0.39 -1.0
906,175 - Echvi_0793 0.39 +0.6
906,175 - Echvi_0793 0.39 -1.8
906,178 + Echvi_0793 0.39 -0.1
906,303 + Echvi_0793 0.48 -0.5
906,304 - Echvi_0793 0.48 -0.5
906,308 + Echvi_0793 0.49 -1.4
906,324 + Echvi_0793 0.50 -1.1
906,324 + Echvi_0793 0.50 -1.0
906,325 - Echvi_0793 0.50 -0.4
906,339 - Echvi_0793 0.51 -1.9
906,339 - Echvi_0793 0.51 -0.2
906,350 + Echvi_0793 0.52 -1.4
906,351 - Echvi_0793 0.52 +0.9
906,351 - Echvi_0793 0.52 -1.4
906,390 + Echvi_0793 0.55 +0.4
906,390 + Echvi_0793 0.55 -0.1
906,391 - Echvi_0793 0.55 +2.0
906,413 - Echvi_0793 0.56 -0.0
906,441 + Echvi_0793 0.58 -1.0
906,537 + Echvi_0793 0.65 -0.8
906,537 + Echvi_0793 0.65 +2.3
906,538 - Echvi_0793 0.66 -1.0
906,538 - Echvi_0793 0.66 -0.9
906,538 - Echvi_0793 0.66 -1.9
906,538 - Echvi_0793 0.66 -0.7
906,538 - Echvi_0793 0.66 -1.4
906,538 - Echvi_0793 0.66 +0.6
906,538 - Echvi_0793 0.66 -1.0
906,540 + Echvi_0793 0.66 +0.4
906,541 - Echvi_0793 0.66 +0.1
906,541 - Echvi_0793 0.66 -1.4
906,541 - Echvi_0793 0.66 +0.2
906,541 - Echvi_0793 0.66 +1.2
906,546 + Echvi_0793 0.66 -1.7
906,547 - Echvi_0793 0.66 -0.6
906,548 + Echvi_0793 0.66 -1.0
906,548 + Echvi_0793 0.66 +0.2
906,548 + Echvi_0793 0.66 -0.0
906,548 + Echvi_0793 0.66 -0.8
906,548 + Echvi_0793 0.66 -0.2
906,548 + Echvi_0793 0.66 +0.4
906,548 + Echvi_0793 0.66 -0.4
906,548 + Echvi_0793 0.66 -2.0
906,549 - Echvi_0793 0.66 -0.1
906,549 - Echvi_0793 0.66 +0.1
906,549 - Echvi_0793 0.66 -1.5
906,549 - Echvi_0793 0.66 -0.5
906,549 - Echvi_0793 0.66 +0.8
906,549 - Echvi_0793 0.66 -0.4
906,619 - Echvi_0793 0.72 -1.2
906,638 + Echvi_0793 0.73 +0.1
906,638 + Echvi_0793 0.73 -1.0
906,639 - Echvi_0793 0.73 +0.9
906,639 - Echvi_0793 0.73 -0.4
906,639 - Echvi_0793 0.73 -0.1
906,639 - Echvi_0793 0.73 +0.9
906,645 + Echvi_0793 0.73 +0.6
906,646 - Echvi_0793 0.73 -0.7
906,709 - Echvi_0793 0.78 +0.3
906,710 + Echvi_0793 0.78 -0.4
906,764 - Echvi_0793 0.82 -0.7
906,764 - Echvi_0793 0.82 -1.3
906,831 + Echvi_0793 0.87 -0.2
906,832 - Echvi_0793 0.87 -0.1
906,852 + Echvi_0793 0.89 +0.5
906,852 + Echvi_0793 0.89 -0.2
906,913 + +1.9
906,913 + -0.9
906,918 + -0.3
906,986 + -1.1
906,986 + -0.0
906,987 - -0.7
906,989 + -0.8
906,990 - +0.8
906,991 + +1.9
906,992 - -0.4
906,992 - -0.1
906,992 - -1.4
906,997 - +0.3
906,999 + +0.2
907,000 - -0.6
907,000 - -1.9
907,000 - -0.8
907,000 - +0.1
907,041 + -0.1
907,042 - -0.7
907,081 + -1.2
907,081 + -0.2
907,081 + +1.2
907,214 + Echvi_0794 0.12 +0.1
907,214 + Echvi_0794 0.12 -0.2
907,241 - +0.9
907,279 + Echvi_0794 0.16 +0.1
907,365 - Echvi_0794 0.22 -2.5
907,393 + Echvi_0794 0.24 -0.5
907,394 - Echvi_0794 0.24 +0.3
907,394 - Echvi_0794 0.24 +0.5
907,470 + Echvi_0794 0.28 +0.4
907,474 - Echvi_0794 0.29 +0.0
907,582 + Echvi_0794 0.35 -0.7
907,583 - Echvi_0794 0.35 -0.2
907,583 - Echvi_0794 0.35 +0.1
907,599 + Echvi_0794 0.36 +1.4
907,666 + Echvi_0794 0.41 -0.2
907,666 + Echvi_0794 0.41 +0.3
907,667 - Echvi_0794 0.41 +0.3
907,667 - Echvi_0794 0.41 -0.0
907,667 - Echvi_0794 0.41 +0.3
907,670 + Echvi_0794 0.41 -0.1
907,670 + Echvi_0794 0.41 -0.8
907,707 + Echvi_0794 0.43 +0.3
907,708 - Echvi_0794 0.43 -0.6
907,798 - Echvi_0794 0.49 -0.2
907,798 - Echvi_0794 0.49 -0.6
907,848 + Echvi_0794 0.52 +0.6
907,908 + Echvi_0794 0.56 -1.6
907,984 - Echvi_0794 0.61 -0.2

Or see this region's nucleotide sequence