Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0766

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0765 and Echvi_0766 are separated by 84 nucleotidesEchvi_0766 and Echvi_0767 are separated by 390 nucleotidesEchvi_0767 and Echvi_0768 are separated by 23 nucleotides Echvi_0765: Echvi_0765 - Carbon starvation protein, predicted membrane protein, at 857,801 to 859,435 _0765 Echvi_0766: Echvi_0766 - hypothetical protein, at 859,520 to 860,314 _0766 Echvi_0767: Echvi_0767 - hypothetical protein, at 860,705 to 860,959 _0767 Echvi_0768: Echvi_0768 - carbamoyl-phosphate synthase, large subunit, at 860,983 to 863,802 _0768 Position (kb) 859 860 861Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 858.527 kb on + strand, within Echvi_0765at 858.532 kb on + strand, within Echvi_0765at 858.533 kb on - strand, within Echvi_0765at 858.533 kb on - strand, within Echvi_0765at 858.535 kb on + strand, within Echvi_0765at 858.536 kb on - strand, within Echvi_0765at 858.536 kb on - strand, within Echvi_0765at 858.548 kb on + strand, within Echvi_0765at 858.557 kb on - strand, within Echvi_0765at 858.584 kb on + strand, within Echvi_0765at 858.635 kb on - strand, within Echvi_0765at 858.648 kb on + strand, within Echvi_0765at 858.661 kb on - strand, within Echvi_0765at 858.661 kb on - strand, within Echvi_0765at 858.842 kb on + strand, within Echvi_0765at 858.842 kb on + strand, within Echvi_0765at 858.844 kb on + strand, within Echvi_0765at 858.845 kb on - strand, within Echvi_0765at 858.845 kb on - strand, within Echvi_0765at 858.845 kb on - strand, within Echvi_0765at 858.995 kb on - strand, within Echvi_0765at 859.077 kb on - strand, within Echvi_0765at 859.110 kb on + strand, within Echvi_0765at 859.144 kb on - strand, within Echvi_0765at 859.153 kb on - strand, within Echvi_0765at 859.174 kb on - strand, within Echvi_0765at 859.227 kb on + strand, within Echvi_0765at 859.248 kb on + strand, within Echvi_0765at 859.325 kb on + strandat 859.326 kb on - strandat 859.328 kb on - strandat 859.371 kb on + strandat 859.483 kb on - strandat 859.686 kb on + strand, within Echvi_0766at 859.687 kb on - strand, within Echvi_0766at 859.703 kb on + strand, within Echvi_0766at 859.705 kb on + strand, within Echvi_0766at 859.908 kb on - strand, within Echvi_0766at 859.908 kb on - strand, within Echvi_0766at 859.909 kb on + strand, within Echvi_0766at 859.909 kb on + strand, within Echvi_0766at 859.910 kb on - strand, within Echvi_0766at 859.910 kb on - strand, within Echvi_0766at 859.932 kb on + strand, within Echvi_0766at 859.932 kb on + strand, within Echvi_0766at 859.932 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.935 kb on - strand, within Echvi_0766at 859.941 kb on + strand, within Echvi_0766at 859.942 kb on - strand, within Echvi_0766at 859.956 kb on - strand, within Echvi_0766at 859.969 kb on + strand, within Echvi_0766at 860.207 kb on - strand, within Echvi_0766at 860.210 kb on + strand, within Echvi_0766at 860.211 kb on - strand, within Echvi_0766at 860.247 kb on + strandat 860.258 kb on - strandat 860.343 kb on + strandat 860.344 kb on - strandat 860.348 kb on + strandat 860.349 kb on - strandat 860.410 kb on - strandat 860.412 kb on + strandat 860.413 kb on - strandat 860.413 kb on - strandat 860.421 kb on - strandat 860.426 kb on + strandat 860.437 kb on + strandat 860.437 kb on + strandat 860.437 kb on + strandat 860.476 kb on - strandat 860.476 kb on - strandat 860.476 kb on - strandat 860.559 kb on + strandat 860.634 kb on + strandat 860.701 kb on + strandat 860.702 kb on - strandat 860.707 kb on - strandat 860.707 kb on - strandat 860.733 kb on + strand, within Echvi_0767at 860.733 kb on + strand, within Echvi_0767at 860.733 kb on + strand, within Echvi_0767at 860.733 kb on + strand, within Echvi_0767at 860.734 kb on - strand, within Echvi_0767at 860.734 kb on - strand, within Echvi_0767at 860.755 kb on + strand, within Echvi_0767at 860.755 kb on + strand, within Echvi_0767at 860.756 kb on - strand, within Echvi_0767at 860.756 kb on - strand, within Echvi_0767at 860.773 kb on - strand, within Echvi_0767at 860.787 kb on + strand, within Echvi_0767at 860.798 kb on + strand, within Echvi_0767at 860.798 kb on + strand, within Echvi_0767at 860.799 kb on - strand, within Echvi_0767at 860.799 kb on - strand, within Echvi_0767at 860.884 kb on + strand, within Echvi_0767at 860.991 kb on + strandat 860.997 kb on - strandat 861.029 kb on + strandat 861.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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858,527 + Echvi_0765 0.44 +0.7
858,532 + Echvi_0765 0.45 +0.9
858,533 - Echvi_0765 0.45 +0.2
858,533 - Echvi_0765 0.45 +0.5
858,535 + Echvi_0765 0.45 -0.1
858,536 - Echvi_0765 0.45 -0.0
858,536 - Echvi_0765 0.45 -1.8
858,548 + Echvi_0765 0.46 +3.9
858,557 - Echvi_0765 0.46 -1.3
858,584 + Echvi_0765 0.48 -0.8
858,635 - Echvi_0765 0.51 +1.4
858,648 + Echvi_0765 0.52 -0.0
858,661 - Echvi_0765 0.53 -0.2
858,661 - Echvi_0765 0.53 +0.5
858,842 + Echvi_0765 0.64 +2.6
858,842 + Echvi_0765 0.64 +1.4
858,844 + Echvi_0765 0.64 -0.3
858,845 - Echvi_0765 0.64 -0.1
858,845 - Echvi_0765 0.64 +0.3
858,845 - Echvi_0765 0.64 +1.6
858,995 - Echvi_0765 0.73 +0.4
859,077 - Echvi_0765 0.78 -0.9
859,110 + Echvi_0765 0.80 -1.2
859,144 - Echvi_0765 0.82 +0.7
859,153 - Echvi_0765 0.83 -0.9
859,174 - Echvi_0765 0.84 -0.8
859,227 + Echvi_0765 0.87 +0.9
859,248 + Echvi_0765 0.89 -2.3
859,325 + -1.3
859,326 - -2.1
859,328 - -0.6
859,371 + -0.4
859,483 - +1.9
859,686 + Echvi_0766 0.21 +0.9
859,687 - Echvi_0766 0.21 -1.5
859,703 + Echvi_0766 0.23 +0.5
859,705 + Echvi_0766 0.23 +0.3
859,908 - Echvi_0766 0.49 -0.5
859,908 - Echvi_0766 0.49 -1.6
859,909 + Echvi_0766 0.49 -1.2
859,909 + Echvi_0766 0.49 -1.0
859,910 - Echvi_0766 0.49 -1.6
859,910 - Echvi_0766 0.49 -0.2
859,932 + Echvi_0766 0.52 +1.1
859,932 + Echvi_0766 0.52 -0.0
859,932 + Echvi_0766 0.52 -1.0
859,934 + Echvi_0766 0.52 -0.2
859,934 + Echvi_0766 0.52 -0.5
859,934 + Echvi_0766 0.52 -0.5
859,934 + Echvi_0766 0.52 -0.1
859,934 + Echvi_0766 0.52 -0.6
859,935 - Echvi_0766 0.52 -0.1
859,941 + Echvi_0766 0.53 -0.4
859,942 - Echvi_0766 0.53 -0.2
859,956 - Echvi_0766 0.55 +0.7
859,969 + Echvi_0766 0.56 -0.6
860,207 - Echvi_0766 0.86 +0.2
860,210 + Echvi_0766 0.87 +0.5
860,211 - Echvi_0766 0.87 -1.7
860,247 + +0.4
860,258 - +0.5
860,343 + +0.8
860,344 - +1.0
860,348 + -0.6
860,349 - -0.8
860,410 - -0.9
860,412 + -0.7
860,413 - +0.7
860,413 - -0.3
860,421 - -0.5
860,426 + +0.0
860,437 + +0.5
860,437 + +0.3
860,437 + -0.3
860,476 - -0.1
860,476 - +0.2
860,476 - +0.8
860,559 + +0.3
860,634 + -0.2
860,701 + -0.1
860,702 - +0.2
860,707 - +0.2
860,707 - +0.7
860,733 + Echvi_0767 0.11 -0.3
860,733 + Echvi_0767 0.11 -1.3
860,733 + Echvi_0767 0.11 +1.9
860,733 + Echvi_0767 0.11 +0.4
860,734 - Echvi_0767 0.11 -1.1
860,734 - Echvi_0767 0.11 -0.9
860,755 + Echvi_0767 0.20 -1.2
860,755 + Echvi_0767 0.20 -0.1
860,756 - Echvi_0767 0.20 +0.4
860,756 - Echvi_0767 0.20 +0.3
860,773 - Echvi_0767 0.27 -0.1
860,787 + Echvi_0767 0.32 +0.3
860,798 + Echvi_0767 0.36 +0.3
860,798 + Echvi_0767 0.36 -0.5
860,799 - Echvi_0767 0.37 -0.1
860,799 - Echvi_0767 0.37 -0.9
860,884 + Echvi_0767 0.70 +0.9
860,991 + -0.4
860,997 - -0.3
861,029 + -0.7
861,030 - -0.3

Or see this region's nucleotide sequence